Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46773 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99632 * 3 2 1 6 6 H 1.48500 * 109.47464 * 149.99614 * 3 2 1 7 7 C 1.38818 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00299 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47578 * 184.98166 * 10 9 7 12 12 H 1.09004 * 109.87034 * 55.65836 * 11 10 9 13 13 C 1.54316 * 109.88582 * 294.63956 * 11 10 9 14 14 C 1.55157 * 102.94499 * 218.23296 * 13 11 10 15 15 C 1.54908 * 101.57696 * 35.50178 * 14 13 11 16 16 N 1.47014 * 110.01206 * 176.74945 * 11 10 9 17 17 C 1.34780 * 125.65119 * 298.47285 * 16 11 10 18 18 O 1.21276 * 119.99868 * 4.92311 * 17 16 11 19 19 C 1.50701 * 119.99765 * 184.92690 * 17 16 11 20 20 C 1.53006 * 109.46713 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46777 * 180.02562 * 20 19 17 22 22 C 1.34780 * 119.99829 * 180.02562 * 21 20 19 23 23 O 1.21698 * 119.99800 * 359.97438 * 22 21 20 24 24 C 1.46652 * 119.99993 * 180.02562 * 22 21 20 25 25 C 1.36547 * 125.98690 * 179.71377 * 24 22 21 26 26 C 1.40370 * 106.70793 * 179.90832 * 25 24 22 27 27 C 1.35132 * 107.11309 * 0.35180 * 26 25 24 28 28 O 1.33932 * 108.76979 * 359.78161 * 27 26 25 29 29 H 0.97001 * 119.99667 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00012 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46292 * 64.98623 * 10 9 7 32 32 H 1.09002 * 109.47219 * 304.98849 * 10 9 7 33 33 H 1.09000 * 110.72337 * 336.60175 * 13 11 10 34 34 H 1.09012 * 110.71792 * 99.86694 * 13 11 10 35 35 H 1.09000 * 111.00553 * 153.58016 * 14 13 11 36 36 H 1.09001 * 111.00275 * 277.43132 * 14 13 11 37 37 H 1.09003 * 110.36233 * 204.15557 * 15 14 13 38 38 H 1.08995 * 110.46013 * 81.87974 * 15 14 13 39 39 H 1.08995 * 109.47363 * 299.99820 * 19 17 16 40 40 H 1.08994 * 109.47346 * 60.00135 * 19 17 16 41 41 H 1.08994 * 109.47323 * 299.99550 * 20 19 17 42 42 H 1.09000 * 109.46915 * 60.00486 * 20 19 17 43 43 H 0.96997 * 120.00165 * 0.02562 * 21 20 19 44 44 H 1.07999 * 126.64728 * 0.04179 * 25 24 22 45 45 H 1.07994 * 126.44158 * 180.11490 * 26 25 24 46 46 H 1.07999 * 125.61619 * 179.78060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0684 -4.8171 -0.1224 12 1 0.4528 -4.6855 -1.0123 13 6 0.1715 -4.8783 1.1319 14 6 0.0187 -6.4029 1.3759 15 6 1.4135 -6.9269 0.9520 16 7 1.7956 -6.0923 -0.2017 17 6 2.6677 -6.4405 -1.1684 18 8 2.9763 -5.6385 -2.0242 19 6 3.2594 -7.8264 -1.1860 20 6 4.2100 -7.9600 -2.3774 21 7 4.7847 -9.3075 -2.3948 22 6 5.6568 -9.6557 -3.3616 23 8 5.9664 -8.8509 -4.2204 24 6 6.2317 -11.0047 -3.3794 25 6 7.1174 -11.4873 -4.2997 26 6 7.3989 -12.8126 -3.9326 27 6 6.6756 -13.0800 -2.8229 28 8 5.9736 -11.9882 -2.4927 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.6166 -3.7538 0.9326 32 1 2.7493 -3.6774 -0.8409 33 1 0.6609 -4.3991 1.9798 34 1 -0.7980 -4.4201 0.9355 35 1 -0.1744 -6.6128 2.4279 36 1 -0.7647 -6.8230 0.7451 37 1 1.3519 -7.9748 0.6583 38 1 2.1301 -6.8027 1.7639 39 1 3.8093 -7.9984 -0.2608 40 1 2.4598 -8.5617 -1.2754 41 1 3.6597 -7.7882 -3.3024 42 1 5.0097 -7.2247 -2.2883 43 1 4.5376 -9.9490 -1.7106 44 1 7.5245 -10.9523 -5.1450 45 1 8.0649 -13.4921 -4.4434 46 1 6.6652 -14.0193 -2.2901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569563760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = -68.039593 kcal Electronic energy + Delta-G solvation = -27874.566950 eV Core-core repulsion = 23765.162798 eV Total energy + Delta-G solvation = -4109.404152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63621 -41.36425 -40.56565 -38.77033 -36.49266 -36.40503 -34.06412 -33.64899 -32.84899 -32.08235 -30.68307 -30.08168 -26.74587 -26.16623 -24.65281 -23.74331 -23.10593 -22.66361 -21.80072 -21.45898 -20.22825 -19.52824 -19.06664 -18.23085 -17.66884 -17.43570 -17.24499 -16.79636 -16.71192 -16.44197 -15.96852 -15.64510 -15.30285 -15.15021 -15.05985 -14.88548 -14.48265 -14.13202 -14.03755 -13.94114 -13.69419 -13.63751 -13.53997 -13.10147 -12.97807 -12.91316 -12.79024 -12.54548 -12.20974 -12.01612 -11.91796 -11.75769 -11.64809 -11.56333 -11.06823 -11.05644 -10.84175 -10.41921 -9.67645 -9.64834 -9.06533 -8.00426 -5.29910 0.00123 1.42376 1.42698 1.45768 1.50652 1.54002 1.59664 1.86831 2.04594 2.27920 2.53334 3.31911 3.43128 3.62714 3.68040 3.75884 3.91552 3.94833 3.96585 4.02896 4.13154 4.13461 4.32102 4.35768 4.44397 4.54989 4.61005 4.75031 4.77257 4.82023 4.87413 4.92334 4.96321 4.97852 5.05588 5.14207 5.15736 5.17521 5.36538 5.39191 5.41567 5.47122 5.81197 6.21543 6.35900 6.57156 6.94225 7.15409 7.28077 7.99730 8.27556 9.22660 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.001987 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.869591 B =14084.972481 C =15421.237759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.151 3.849 11 C 0.136 3.864 12 H 0.049 0.951 13 C -0.120 4.120 14 C -0.120 4.120 15 C 0.094 3.906 16 N -0.611 5.611 17 C 0.517 3.483 18 O -0.588 6.588 19 C -0.126 4.126 20 C 0.138 3.862 21 N -0.700 5.700 22 C 0.598 3.402 23 O -0.567 6.567 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.237 4.237 27 C 0.017 3.983 28 O -0.165 6.165 29 H 0.254 0.746 30 H 0.377 0.623 31 H 0.015 0.985 32 H 0.007 0.993 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.423 0.577 44 H 0.153 0.847 45 H 0.182 0.818 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -36.227 3.013 37.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.023 3.977 11 C 0.032 3.968 12 H 0.067 0.933 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.307 3.693 18 O -0.468 6.468 19 C -0.166 4.166 20 C 0.014 3.986 21 N -0.352 5.352 22 C 0.385 3.615 23 O -0.447 6.447 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.256 4.256 27 C -0.052 4.052 28 O -0.060 6.060 29 H 0.063 0.937 30 H 0.210 0.790 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.261 0.739 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 8.065 -35.108 2.190 36.089 hybrid contribution 0.161 1.508 -0.427 1.575 sum 8.226 -33.600 1.763 34.637 Atomic orbital electron populations 1.69802 1.06377 1.26274 1.58992 1.25565 0.96563 1.00966 1.03209 0.85115 0.77738 0.79316 0.77422 1.21643 1.21191 1.19642 1.19542 0.91174 0.85517 1.42091 0.91697 1.42324 1.05557 1.00656 1.89461 1.20973 0.94243 0.85601 0.96866 1.21527 0.92503 0.83536 0.99259 0.93279 1.22590 0.98862 0.99072 0.95341 1.22818 0.96624 0.92233 1.04049 1.22744 0.96595 0.96177 0.87198 1.48653 1.42917 1.17067 1.25820 1.20895 0.78060 0.90500 0.79862 1.90788 1.61234 1.54608 1.40141 1.21713 1.00982 0.93070 1.00797 1.20898 0.96343 0.82672 0.98726 1.45612 1.44479 1.15308 1.29825 1.16832 0.78773 0.84312 0.81548 1.90906 1.62633 1.51304 1.39903 1.21634 1.07662 0.90201 0.96468 1.22277 0.96793 0.96500 0.99410 1.22224 1.06554 0.96357 1.00468 1.25427 0.91847 0.90664 0.97279 1.84044 1.56098 1.20026 1.45879 0.93729 0.79045 0.96722 0.97491 0.91241 0.90736 0.87038 0.89589 0.86242 0.89823 0.84613 0.84119 0.92445 0.92782 0.73875 0.82957 0.80112 0.72522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.68 13.06 21.65 0.28 -60.39 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -15.26 9.99 84.04 0.84 -14.42 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -40.75 5.44 -343.44 -1.87 -42.61 16 10 C 0.15 7.00 5.64 86.38 0.49 7.49 16 11 C 0.14 4.80 2.99 45.34 0.14 4.93 16 12 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 13 C -0.12 -3.33 6.00 31.78 0.19 -3.14 16 14 C -0.12 -1.85 7.09 31.99 0.23 -1.62 16 15 C 0.09 1.33 6.74 86.85 0.59 1.91 16 16 N -0.61 -16.07 3.07 -788.09 -2.42 -18.49 16 17 C 0.52 14.79 7.67 87.66 0.67 15.46 16 18 O -0.59 -24.48 14.80 -3.02 -0.04 -24.52 16 19 C -0.13 -1.92 4.75 29.85 0.14 -1.78 16 20 C 0.14 3.07 4.96 86.38 0.43 3.49 16 21 N -0.70 -12.07 5.55 -467.09 -2.59 -14.67 16 22 C 0.60 14.19 7.79 86.44 0.67 14.87 16 23 O -0.57 -18.91 16.86 -4.34 -0.07 -18.98 16 24 C -0.11 -1.99 7.13 24.07 0.17 -1.82 16 25 C -0.13 -2.17 10.62 22.39 0.24 -1.93 16 26 C -0.24 -2.20 10.88 22.07 0.24 -1.96 16 27 C 0.02 0.10 12.08 67.10 0.81 0.91 16 28 O -0.17 -1.98 10.40 -5.10 -0.05 -2.04 16 29 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.38 21.38 7.39 -92.71 -0.68 20.69 16 31 H 0.01 0.68 8.07 -2.38 -0.02 0.66 16 32 H 0.01 0.37 6.61 -2.39 -0.02 0.36 16 33 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 34 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 0.69 7.47 -2.39 -0.02 0.67 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.14 1.06 7.95 -2.39 -0.02 1.04 16 41 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 42 H 0.05 1.53 8.10 -2.39 -0.02 1.52 16 43 H 0.42 3.89 8.23 -92.71 -0.76 3.12 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 46 H 0.26 -1.19 8.06 -2.91 -0.02 -1.21 16 Total: -1.00 -91.72 388.74 1.13 -90.59 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.44 Total: 21.91 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.31 Total: 18.61 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -6.60 Total: -136.16 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.17 Total: -45.54 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -91.72 1.13 -90.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569563760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.554 kcal (2) G-P(sol) polarization free energy of solvation -91.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds