Wall clock time and date at job start Tue Mar 31 2020 18:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46996 * 299.99877 * 3 2 1 6 6 H 1.48497 * 109.46928 * 60.00078 * 3 2 1 7 7 C 1.38819 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99347 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99818 * 173.93170 * 9 7 2 11 11 C 1.53000 * 112.85294 * 294.82701 * 10 9 7 12 12 N 1.46502 * 109.46871 * 294.02858 * 11 10 9 13 13 C 1.34776 * 120.00192 * 176.08813 * 12 11 10 14 14 O 1.21284 * 119.99730 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.53007 * 109.46683 * 180.02562 * 15 13 12 17 17 N 1.46501 * 109.46968 * 180.02562 * 16 15 13 18 18 C 1.34777 * 120.00211 * 180.02562 * 17 16 15 19 19 O 1.21694 * 119.99564 * 359.97438 * 18 17 16 20 20 C 1.46651 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.36539 * 125.98861 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.71120 * 180.02562 * 21 20 18 23 23 C 1.35134 * 107.11800 * 0.02562 * 22 21 20 24 24 O 1.33939 * 108.76231 * 359.97438 * 23 22 21 25 25 C 1.53780 * 113.61129 * 66.01947 * 10 9 7 26 26 C 1.53954 * 87.02121 * 89.22599 * 25 10 9 27 27 C 1.53778 * 113.61543 * 163.62259 * 10 9 7 28 28 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00794 * 353.94167 * 9 7 2 30 30 H 1.08995 * 109.47559 * 174.03100 * 11 10 9 31 31 H 1.08997 * 109.47166 * 54.02429 * 11 10 9 32 32 H 0.97005 * 120.00103 * 356.09486 * 12 11 10 33 33 H 1.08998 * 109.47154 * 60.00437 * 15 13 12 34 34 H 1.08994 * 109.47611 * 300.00354 * 15 13 12 35 35 H 1.08998 * 109.47307 * 60.00116 * 16 15 13 36 36 H 1.09002 * 109.46841 * 300.00063 * 16 15 13 37 37 H 0.97005 * 119.99622 * 359.97438 * 17 16 15 38 38 H 1.08005 * 126.64637 * 0.02562 * 21 20 18 39 39 H 1.08000 * 126.44733 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.62140 * 180.25986 * 23 22 21 41 41 H 1.08997 * 113.61869 * 203.74875 * 25 10 9 42 42 H 1.09003 * 113.61371 * 334.65258 * 25 10 9 43 43 H 1.08995 * 113.53953 * 270.81409 * 26 25 10 44 44 H 1.09005 * 113.66552 * 139.92927 * 26 25 10 45 45 H 1.09007 * 113.61169 * 25.35358 * 27 10 9 46 46 H 1.08998 * 113.61308 * 156.25267 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0519 -3.6533 -0.1330 11 6 2.7411 -3.8024 -1.4908 12 7 1.7281 -3.8920 -2.5454 13 6 2.1044 -3.9492 -3.8383 14 8 3.2818 -3.9268 -4.1287 15 6 1.0624 -4.0420 -4.9230 16 6 1.7508 -4.0934 -6.2884 17 7 0.7378 -4.1830 -7.3430 18 6 1.1142 -4.2411 -8.6358 19 8 2.2955 -4.2186 -8.9272 20 6 0.1001 -4.3313 -9.6914 21 6 0.3427 -4.3959 -11.0335 22 6 -0.9079 -4.4705 -11.6665 23 6 -1.8473 -4.4479 -10.6953 24 8 -1.2359 -4.3642 -9.5065 25 6 2.9692 -3.9659 1.0610 26 6 1.7595 -4.6691 1.7032 27 6 1.2260 -4.8840 0.2770 28 1 -0.4850 0.8400 -0.0004 29 1 0.3596 -2.3904 0.0888 30 1 3.3485 -4.7074 -1.4927 31 1 3.3783 -2.9367 -1.6718 32 1 0.7864 -3.9102 -2.3131 33 1 0.4110 -3.1693 -4.8767 34 1 0.4696 -4.9456 -4.7811 35 1 2.4019 -4.9663 -6.3345 36 1 2.3438 -3.1899 -6.4305 37 1 -0.2038 -4.2013 -7.1106 38 1 1.3095 -4.3907 -11.5149 39 1 -1.0860 -4.5341 -12.7298 40 1 -2.9148 -4.4947 -10.8516 41 1 3.7884 -4.6422 0.8169 42 1 3.2982 -3.0792 1.6027 43 1 1.1397 -4.0053 2.3058 44 1 2.0145 -5.5953 2.2182 45 1 0.1496 -4.7373 0.1868 46 1 1.5677 -5.8118 -0.1818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570126572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:03 Heat of formation + Delta-G solvation = -27.218251 kcal Electronic energy + Delta-G solvation = -27947.637897 eV Core-core repulsion = 23840.003891 eV Total energy + Delta-G solvation = -4107.634006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.01624 -39.88631 -39.40629 -38.47578 -35.45049 -33.92768 -33.43258 -33.29413 -31.55984 -30.15081 -29.83179 -27.32232 -25.33586 -24.76279 -23.77392 -22.68772 -22.06650 -21.59310 -20.73724 -20.01803 -18.86365 -18.21625 -17.17930 -17.03757 -16.72519 -16.57440 -15.94314 -15.81159 -15.48520 -15.06683 -14.71175 -14.39274 -14.31738 -14.00566 -13.56076 -13.42953 -13.36199 -13.25848 -13.14682 -12.96185 -12.63310 -12.13744 -11.98895 -11.82207 -11.49093 -11.26801 -11.04756 -10.88183 -10.59440 -10.43547 -10.39460 -10.24199 -10.13100 -9.77210 -9.60194 -9.48147 -9.42619 -9.00937 -8.92254 -8.53759 -7.07869 -5.86632 -3.16144 0.73281 1.99765 2.31817 2.85463 2.92608 2.95316 3.38983 3.46746 3.47643 3.67831 4.32382 4.51010 4.53212 4.59016 4.73904 4.98416 5.03417 5.14550 5.23127 5.25783 5.26322 5.38273 5.40020 5.44655 5.50060 5.51975 5.74697 5.78623 5.86877 5.94211 6.01309 6.08378 6.10317 6.15831 6.28472 6.35358 6.45089 6.51104 6.68311 6.86028 6.94006 7.02721 7.17856 7.67452 7.81961 7.92067 8.32243 8.57942 9.43887 9.96997 10.32261 11.35418 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.002238 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.207053 B =12510.252423 C =13531.144960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.120 3.880 12 N -0.702 5.702 13 C 0.514 3.486 14 O -0.550 6.550 15 C -0.155 4.155 16 C 0.135 3.865 17 N -0.719 5.719 18 C 0.602 3.398 19 O -0.516 6.516 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.226 4.226 23 C -0.007 4.007 24 O -0.164 6.164 25 C -0.151 4.151 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.405 0.595 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.211 0.789 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -13.192 -15.487 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.006 4.006 12 N -0.351 5.351 13 C 0.299 3.701 14 O -0.429 6.429 15 C -0.195 4.195 16 C 0.012 3.988 17 N -0.370 5.370 18 C 0.387 3.613 19 O -0.393 6.393 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.245 4.245 23 C -0.077 4.077 24 O -0.059 6.059 25 C -0.191 4.191 26 C -0.166 4.166 27 C -0.182 4.182 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.240 0.760 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.227 0.773 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.617 -12.974 -15.556 20.776 hybrid contribution -0.917 1.076 0.010 1.414 sum -5.534 -11.898 -15.546 20.343 Atomic orbital electron populations 1.69660 1.05059 1.25634 1.57572 1.24720 0.95480 0.97642 1.02664 0.86164 0.79026 0.84167 0.77152 1.20460 1.21860 1.21894 1.19150 0.91120 0.83609 1.42633 0.91075 1.42055 1.06028 0.99024 1.86837 1.20825 0.92999 0.87428 0.90729 1.21866 0.90670 1.00608 0.87501 1.45727 1.10992 1.73072 1.05355 1.20124 0.89502 0.76810 0.83678 1.90711 1.18701 1.50647 1.82806 1.21796 0.99098 1.05173 0.93471 1.21139 0.89725 1.04391 0.83589 1.45904 1.11160 1.74337 1.05633 1.16507 0.86351 0.77204 0.81219 1.90921 1.15849 1.50372 1.82163 1.22126 0.81061 1.13917 0.95839 1.22009 1.00110 1.00321 0.91752 1.21887 0.92036 1.09406 1.01168 1.24441 0.99232 1.02509 0.81497 1.84068 1.18400 1.70278 1.33198 1.23343 0.96359 1.00397 0.99046 1.22663 0.98536 0.99531 0.95892 1.23146 0.99865 0.97823 0.97407 0.93560 0.77952 0.92861 0.91151 0.76550 0.87936 0.88407 0.90082 0.89942 0.75988 0.82161 0.82548 0.77265 0.91308 0.90699 0.90045 0.92726 0.91673 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.50 13.07 55.49 0.73 -25.78 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.04 9.06 -15.06 -0.14 -6.18 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -15.53 5.18 -46.48 -0.24 -15.77 16 10 C 0.17 3.06 0.80 -131.01 -0.10 2.96 16 11 C 0.12 2.12 5.03 -4.04 -0.02 2.10 16 12 N -0.70 -11.06 5.45 -60.29 -0.33 -11.39 16 13 C 0.51 8.11 7.83 -10.99 -0.09 8.02 16 14 O -0.55 -10.80 15.98 5.55 0.09 -10.72 16 15 C -0.15 -1.71 5.81 -27.88 -0.16 -1.87 16 16 C 0.13 1.67 4.96 -4.04 -0.02 1.65 16 17 N -0.72 -7.64 5.55 -61.62 -0.34 -7.98 16 18 C 0.60 7.64 7.79 -12.87 -0.10 7.54 16 19 O -0.52 -8.37 16.86 5.19 0.09 -8.28 16 20 C -0.08 -0.83 7.13 -36.80 -0.26 -1.09 16 21 C -0.12 -1.15 10.62 -39.40 -0.42 -1.57 16 22 C -0.23 -1.56 10.87 -39.89 -0.43 -1.99 16 23 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 24 O -0.16 -1.44 10.40 4.96 0.05 -1.39 16 25 C -0.15 -2.51 7.29 -25.83 -0.19 -2.70 16 26 C -0.13 -1.93 8.00 -25.83 -0.21 -2.13 16 27 C -0.14 -2.09 7.08 -25.92 -0.18 -2.27 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.39 9.14 7.87 -40.82 -0.32 8.82 16 30 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.07 1.48 7.85 -51.93 -0.41 1.08 16 32 H 0.40 5.71 8.31 -40.82 -0.34 5.37 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.41 3.22 8.23 -40.82 -0.34 2.89 16 38 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.21 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 46 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -33.48 394.71 -7.93 -41.41 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -6.84 Total: 14.54 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.06 Total: 2.43 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.19 Total: -60.92 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.23 Total: -20.39 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.48 -7.93 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570126572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.195 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds