Wall clock time and date at job start Tue Mar 31 2020 18:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46996 * 299.99877 * 3 2 1 6 6 H 1.48497 * 109.46928 * 60.00078 * 3 2 1 7 7 C 1.38819 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99347 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99818 * 173.93170 * 9 7 2 11 11 C 1.53000 * 112.85294 * 294.82701 * 10 9 7 12 12 N 1.46502 * 109.46871 * 294.02858 * 11 10 9 13 13 C 1.34776 * 120.00192 * 176.08813 * 12 11 10 14 14 O 1.21284 * 119.99730 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.53007 * 109.46683 * 180.02562 * 15 13 12 17 17 N 1.46501 * 109.46968 * 180.02562 * 16 15 13 18 18 C 1.34777 * 120.00211 * 180.02562 * 17 16 15 19 19 O 1.21694 * 119.99564 * 359.97438 * 18 17 16 20 20 C 1.46651 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.36539 * 125.98861 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.71120 * 180.02562 * 21 20 18 23 23 C 1.35134 * 107.11800 * 0.02562 * 22 21 20 24 24 O 1.33939 * 108.76231 * 359.97438 * 23 22 21 25 25 C 1.53780 * 113.61129 * 66.01947 * 10 9 7 26 26 C 1.53954 * 87.02121 * 89.22599 * 25 10 9 27 27 C 1.53778 * 113.61543 * 163.62259 * 10 9 7 28 28 H 0.97001 * 120.00048 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00794 * 353.94167 * 9 7 2 30 30 H 1.08995 * 109.47559 * 174.03100 * 11 10 9 31 31 H 1.08997 * 109.47166 * 54.02429 * 11 10 9 32 32 H 0.97005 * 120.00103 * 356.09486 * 12 11 10 33 33 H 1.08998 * 109.47154 * 60.00437 * 15 13 12 34 34 H 1.08994 * 109.47611 * 300.00354 * 15 13 12 35 35 H 1.08998 * 109.47307 * 60.00116 * 16 15 13 36 36 H 1.09002 * 109.46841 * 300.00063 * 16 15 13 37 37 H 0.97005 * 119.99622 * 359.97438 * 17 16 15 38 38 H 1.08005 * 126.64637 * 0.02562 * 21 20 18 39 39 H 1.08000 * 126.44733 * 180.02562 * 22 21 20 40 40 H 1.07997 * 125.62140 * 180.25986 * 23 22 21 41 41 H 1.08997 * 113.61869 * 203.74875 * 25 10 9 42 42 H 1.09003 * 113.61371 * 334.65258 * 25 10 9 43 43 H 1.08995 * 113.53953 * 270.81409 * 26 25 10 44 44 H 1.09005 * 113.66552 * 139.92927 * 26 25 10 45 45 H 1.09007 * 113.61169 * 25.35358 * 27 10 9 46 46 H 1.08998 * 113.61308 * 156.25267 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0519 -3.6533 -0.1330 11 6 2.7411 -3.8024 -1.4908 12 7 1.7281 -3.8920 -2.5454 13 6 2.1044 -3.9492 -3.8383 14 8 3.2818 -3.9268 -4.1287 15 6 1.0624 -4.0420 -4.9230 16 6 1.7508 -4.0934 -6.2884 17 7 0.7378 -4.1830 -7.3430 18 6 1.1142 -4.2411 -8.6358 19 8 2.2955 -4.2186 -8.9272 20 6 0.1001 -4.3313 -9.6914 21 6 0.3427 -4.3959 -11.0335 22 6 -0.9079 -4.4705 -11.6665 23 6 -1.8473 -4.4479 -10.6953 24 8 -1.2359 -4.3642 -9.5065 25 6 2.9692 -3.9659 1.0610 26 6 1.7595 -4.6691 1.7032 27 6 1.2260 -4.8840 0.2770 28 1 -0.4850 0.8400 -0.0004 29 1 0.3596 -2.3904 0.0888 30 1 3.3485 -4.7074 -1.4927 31 1 3.3783 -2.9367 -1.6718 32 1 0.7864 -3.9102 -2.3131 33 1 0.4110 -3.1693 -4.8767 34 1 0.4696 -4.9456 -4.7811 35 1 2.4019 -4.9663 -6.3345 36 1 2.3438 -3.1899 -6.4305 37 1 -0.2038 -4.2013 -7.1106 38 1 1.3095 -4.3907 -11.5149 39 1 -1.0860 -4.5341 -12.7298 40 1 -2.9148 -4.4947 -10.8516 41 1 3.7884 -4.6422 0.8169 42 1 3.2982 -3.0792 1.6027 43 1 1.1397 -4.0053 2.3058 44 1 2.0145 -5.5953 2.2182 45 1 0.1496 -4.7373 0.1868 46 1 1.5677 -5.8118 -0.1818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570126572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:02 Heat of formation + Delta-G solvation = -52.737534 kcal Electronic energy + Delta-G solvation = -27948.744497 eV Core-core repulsion = 23840.003891 eV Total energy + Delta-G solvation = -4108.740605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64330 -41.08836 -40.55501 -39.81653 -36.48058 -35.30654 -35.18464 -34.06194 -32.56566 -31.88139 -30.68309 -28.68836 -26.70846 -25.98502 -25.34303 -23.63354 -22.91156 -22.65359 -21.67179 -21.16263 -19.79190 -19.54165 -19.09703 -18.21371 -17.48441 -17.29640 -17.13038 -16.91481 -16.65620 -16.50178 -16.02783 -15.79051 -15.55694 -15.26846 -15.03545 -14.71889 -14.51543 -14.14103 -14.07214 -13.93918 -13.62622 -13.55800 -13.07562 -12.99656 -12.97929 -12.93145 -12.54316 -12.50709 -12.14864 -11.94149 -11.64119 -11.59105 -11.47456 -11.06014 -11.05165 -10.86600 -10.70252 -10.41251 -9.92958 -9.65877 -8.97170 -7.94802 -5.20404 -0.00191 1.42149 1.42469 1.45943 1.52639 1.56029 1.69170 2.01826 2.04434 2.50999 2.56020 3.37656 3.56333 3.76045 3.77048 3.82749 3.93811 3.95519 4.03197 4.03505 4.12381 4.12818 4.25319 4.48565 4.60717 4.68503 4.78843 4.82974 4.86271 4.91453 4.92151 4.94076 4.95639 5.03683 5.15105 5.15389 5.32659 5.39042 5.44133 5.53616 5.65485 5.72622 5.81217 6.30452 6.35173 6.66291 6.92582 7.32727 7.37009 8.11011 8.35046 9.27629 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.002238 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.207053 B =12510.252423 C =13531.144960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.219 4.219 8 H 0.063 0.937 9 N -0.703 5.703 10 C 0.158 3.842 11 C 0.128 3.872 12 N -0.698 5.698 13 C 0.508 3.492 14 O -0.594 6.594 15 C -0.138 4.138 16 C 0.142 3.858 17 N -0.704 5.704 18 C 0.598 3.402 19 O -0.565 6.565 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.236 4.236 23 C 0.014 3.986 24 O -0.168 6.168 25 C -0.153 4.153 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.249 0.751 29 H 0.378 0.622 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.410 0.590 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.421 0.579 38 H 0.156 0.844 39 H 0.183 0.817 40 H 0.257 0.743 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -15.170 -16.222 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.351 4.351 8 H 0.081 0.919 9 N -0.342 5.342 10 C 0.067 3.933 11 C 0.001 3.999 12 N -0.347 5.347 13 C 0.295 3.705 14 O -0.476 6.476 15 C -0.178 4.178 16 C 0.018 3.982 17 N -0.355 5.355 18 C 0.386 3.614 19 O -0.446 6.446 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.255 4.255 23 C -0.055 4.055 24 O -0.064 6.064 25 C -0.193 4.193 26 C -0.159 4.159 27 C -0.162 4.162 28 H 0.058 0.942 29 H 0.212 0.788 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.246 0.754 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.259 0.741 38 H 0.174 0.826 39 H 0.201 0.799 40 H 0.273 0.727 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.824 -14.986 -16.265 23.145 hybrid contribution -0.235 1.614 0.174 1.640 sum -7.059 -13.373 -16.090 22.081 Atomic orbital electron populations 1.69755 1.05860 1.25574 1.59816 1.25261 0.96188 0.99980 1.04305 0.85385 0.78228 0.81524 0.76543 1.20111 1.22529 1.22066 1.19301 0.90887 0.85039 1.39901 0.91905 1.42073 1.05709 0.99747 1.86710 1.21122 0.94230 0.87064 0.90922 1.21664 0.90802 0.99483 0.87945 1.45695 1.11120 1.72751 1.05158 1.20900 0.89816 0.75450 0.84334 1.90697 1.20961 1.52536 1.83419 1.21722 0.97728 1.07895 0.90435 1.20889 0.90037 1.02343 0.84949 1.45704 1.11602 1.73483 1.04739 1.16817 0.86291 0.76305 0.81991 1.90882 1.17933 1.52782 1.82977 1.21687 0.81736 1.17299 0.95385 1.22276 1.01322 0.99344 0.91821 1.22229 0.90803 1.09647 1.02774 1.25428 1.00942 0.98929 0.80194 1.84058 1.17348 1.70432 1.34527 1.23381 0.97639 1.00046 0.98212 1.22595 0.96975 1.00124 0.96233 1.23093 0.99717 0.96861 0.96512 0.94185 0.78810 0.91246 0.95382 0.75386 0.86316 0.84285 0.91515 0.92902 0.74130 0.82628 0.79936 0.72711 0.88914 0.93651 0.92086 0.89687 0.91139 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.27 13.07 21.65 0.28 -54.99 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.95 46.05 29.55 68.60 2.03 48.08 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.22 -11.46 9.06 84.04 0.76 -10.70 16 8 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 9 N -0.70 -31.21 5.18 -300.96 -1.56 -32.77 16 10 C 0.16 5.41 0.80 4.13 0.00 5.41 16 11 C 0.13 4.44 5.03 86.38 0.43 4.88 16 12 N -0.70 -21.15 5.45 -463.06 -2.52 -23.68 16 13 C 0.51 15.72 7.83 87.66 0.69 16.41 16 14 O -0.59 -23.86 15.98 -3.04 -0.05 -23.91 16 15 C -0.14 -2.82 5.81 29.85 0.17 -2.64 16 16 C 0.14 3.55 4.96 86.38 0.43 3.98 16 17 N -0.70 -14.69 5.55 -467.09 -2.59 -17.28 16 18 C 0.60 15.61 7.79 86.44 0.67 16.28 16 19 O -0.56 -19.47 16.86 -4.33 -0.07 -19.54 16 20 C -0.11 -2.29 7.13 24.07 0.17 -2.12 16 21 C -0.13 -2.35 10.62 22.39 0.24 -2.11 16 22 C -0.24 -2.65 10.87 22.07 0.24 -2.41 16 23 C 0.01 0.13 12.08 67.10 0.81 0.94 16 24 O -0.17 -2.59 10.40 -5.16 -0.05 -2.64 16 25 C -0.15 -4.87 7.29 31.18 0.23 -4.64 16 26 C -0.12 -3.34 8.00 31.18 0.25 -3.09 16 27 C -0.12 -3.20 7.08 31.12 0.22 -2.98 16 28 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.38 17.89 7.87 -92.71 -0.73 17.16 16 30 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 31 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 32 H 0.41 10.86 8.31 -92.70 -0.77 10.09 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.42 5.98 8.23 -92.70 -0.76 5.21 16 38 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.26 -0.39 8.06 -2.91 -0.02 -0.42 16 41 H 0.09 2.51 8.04 -2.39 -0.02 2.49 16 42 H 0.04 1.70 7.86 -2.39 -0.02 1.68 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.07 1.79 8.09 -2.38 -0.02 1.77 16 46 H 0.11 2.20 8.10 -2.39 -0.02 2.18 16 Total: -1.00 -77.13 394.71 0.01 -77.12 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.24 Total: 35.48 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.79 Total: 14.12 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -6.39 Total: -128.71 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.18 Total: -46.10 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -77.13 0.01 -77.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570126572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.386 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds