Wall clock time and date at job start Tue Mar 31 2020 18:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47116 * 299.99788 * 3 2 1 6 6 H 1.48501 * 109.47167 * 59.99722 * 3 2 1 7 7 C 1.38810 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00543 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47307 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51212 * 60.10224 * 11 10 9 13 13 C 1.53712 * 109.48607 * 180.36333 * 11 10 9 14 14 N 1.47143 * 108.16478 * 172.40023 * 13 11 10 15 15 C 1.34773 * 120.98640 * 129.43010 * 14 13 11 16 16 O 1.21502 * 119.99614 * 353.26017 * 15 14 13 17 17 C 1.48328 * 120.00471 * 173.53796 * 15 14 13 18 18 N 1.31500 * 127.15103 * 353.23672 * 17 15 14 19 19 O 1.21435 * 111.52401 * 179.79009 * 18 17 15 20 20 C 1.33182 * 111.56764 * 0.43760 * 19 18 17 21 21 C 1.35378 * 106.63847 * 359.79483 * 20 19 18 22 22 C 1.50070 * 124.93985 * 179.80406 * 21 20 19 23 23 C 1.53541 * 108.23324 * 343.95488 * 22 21 20 24 24 C 1.53114 * 109.51183 * 49.18327 * 23 22 21 25 25 C 1.50601 * 129.60172 * 179.97438 * 20 19 18 26 26 C 1.47157 * 118.03350 * 309.15856 * 14 13 11 27 27 C 1.53297 * 108.38268 * 50.78751 * 26 14 13 28 28 O 1.42959 * 109.22246 * 307.69497 * 27 26 14 29 29 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99746 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47015 * 60.00064 * 10 9 7 32 32 H 1.08994 * 109.46924 * 300.00041 * 10 9 7 33 33 H 1.09000 * 109.83594 * 52.71423 * 13 11 10 34 34 H 1.09002 * 109.74331 * 292.02996 * 13 11 10 35 35 H 1.08999 * 109.70752 * 103.63960 * 22 21 20 36 36 H 1.08996 * 109.70540 * 224.26685 * 22 21 20 37 37 H 1.08998 * 109.46231 * 289.17413 * 23 22 21 38 38 H 1.08998 * 109.46708 * 169.19216 * 23 22 21 39 39 H 1.08995 * 109.42871 * 170.06047 * 24 23 22 40 40 H 1.09000 * 109.42744 * 50.21757 * 24 23 22 41 41 H 1.09000 * 109.69794 * 282.89821 * 25 20 19 42 42 H 1.08999 * 109.69877 * 43.49338 * 25 20 19 43 43 H 1.09006 * 109.68235 * 170.50703 * 26 14 13 44 44 H 1.08997 * 109.68198 * 291.06020 * 26 14 13 45 45 H 1.08998 * 109.51532 * 67.62306 * 27 26 14 46 46 H 1.09006 * 109.51046 * 187.77430 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.4374 -4.7639 -0.8892 13 6 1.8317 -6.1512 0.0104 14 7 0.8598 -7.2402 0.1957 15 6 0.8481 -8.3074 -0.6274 16 8 1.5631 -8.3248 -1.6096 17 6 -0.0420 -9.4579 -0.3376 18 7 -0.7794 -9.6410 0.7357 19 8 -1.4030 -10.6812 0.6758 20 6 -1.1515 -11.3383 -0.4551 21 6 -0.2688 -10.5855 -1.1528 22 6 0.2975 -10.9474 -2.4945 23 6 0.0391 -12.4412 -2.7380 24 6 -1.4304 -12.7598 -2.4491 25 6 -1.6972 -12.6548 -0.9421 26 6 -0.0953 -7.1327 1.3101 27 6 -0.7661 -5.7561 1.2408 28 8 0.2416 -4.7446 1.1684 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6846 -3.7146 0.8906 32 1 2.6845 -3.7146 -0.8894 33 1 2.5509 -6.1576 0.8294 34 1 2.3532 -6.2819 -0.9378 35 1 -0.1912 -10.3585 -3.2708 36 1 1.3700 -10.7532 -2.5053 37 1 0.6751 -13.0319 -2.0787 38 1 0.2663 -12.6848 -3.7758 39 1 -1.6556 -13.7710 -2.7879 40 1 -2.0661 -12.0506 -2.9794 41 1 -1.1987 -13.4736 -0.4234 42 1 -2.7701 -12.6997 -0.7549 43 1 -0.8506 -7.9139 1.2230 44 1 0.4332 -7.2364 2.2577 45 1 -1.3989 -5.7036 0.3549 46 1 -1.3735 -5.6017 2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570153408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:57 Heat of formation + Delta-G solvation = 5.258953 kcal Electronic energy + Delta-G solvation = -29187.706697 eV Core-core repulsion = 25081.481008 eV Total energy + Delta-G solvation = -4106.225689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.44373 -40.34557 -38.46646 -37.98357 -35.20663 -34.42872 -34.14828 -32.16639 -31.40910 -30.75329 -30.09914 -28.27221 -26.22948 -24.99156 -23.96250 -23.57142 -23.12247 -22.19798 -20.88884 -20.33471 -19.43601 -18.16227 -17.60750 -17.22989 -16.95203 -16.43519 -15.95522 -15.53742 -15.44026 -15.05406 -14.62103 -14.51571 -14.36185 -14.34346 -14.01560 -13.65869 -13.58947 -13.36136 -13.11458 -12.81527 -12.69124 -12.54457 -12.27925 -11.67964 -11.49951 -11.45561 -11.38081 -11.16022 -10.98965 -10.85844 -10.79243 -10.59000 -10.50881 -10.20260 -9.96847 -9.88653 -9.67206 -9.45598 -8.84878 -8.59710 -6.86675 -5.70532 -2.99221 0.76128 1.32798 2.40742 2.60841 2.89479 3.47286 3.52391 3.55008 3.55916 3.98614 4.01142 4.21421 4.31854 4.48243 4.52408 4.60262 4.66923 4.78357 4.87911 4.93753 4.99882 5.06359 5.14659 5.20325 5.24525 5.30819 5.32843 5.44361 5.51658 5.59377 5.61729 5.62511 5.70138 5.77510 5.79247 5.86579 5.90314 5.95474 6.25181 6.29494 6.57189 6.70726 7.05885 7.47668 7.60400 7.74579 7.85067 8.47531 9.59278 10.16593 10.52667 11.52377 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028406 B = 0.002228 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.465688 B =12565.161573 C =13009.621803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.086 3.914 14 N -0.597 5.597 15 C 0.598 3.402 16 O -0.520 6.520 17 C -0.009 4.009 18 N -0.334 5.334 19 O 0.121 5.879 20 C -0.034 4.034 21 C -0.152 4.152 22 C -0.047 4.047 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.035 4.035 26 C 0.056 3.944 27 C 0.048 3.952 28 O -0.356 6.356 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -31.570 -2.112 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.331 5.331 15 C 0.384 3.616 16 O -0.394 6.394 17 C -0.166 4.166 18 N -0.040 5.040 19 O 0.051 5.949 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.084 4.084 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.073 4.073 26 C -0.067 4.067 27 C -0.030 4.030 28 O -0.274 6.274 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.299 -30.553 -1.401 30.885 hybrid contribution 0.233 0.583 -0.563 0.844 sum -4.066 -29.969 -1.965 30.308 Atomic orbital electron populations 1.69690 1.05120 1.25427 1.57785 1.24752 0.95540 0.97698 1.03104 0.86098 0.78759 0.84093 0.77130 1.20545 1.21914 1.21892 1.19275 0.91046 0.84063 1.42533 0.91071 1.42220 1.06086 0.99436 1.89295 1.20626 0.92323 0.84682 0.98824 1.22878 0.92978 0.93986 0.88647 0.91804 1.22549 0.91230 0.85441 1.04439 1.48006 1.34897 1.19986 1.30171 1.16926 0.81429 0.80596 0.82680 1.90786 1.42142 1.79840 1.26672 1.22992 1.01720 0.98756 0.93150 1.74483 1.08232 1.00266 1.21005 1.84696 1.50635 1.24202 1.35346 1.24140 0.99835 0.98676 0.87200 1.20662 1.01032 0.93613 1.00373 1.20034 1.02084 0.95845 0.90477 1.21719 0.96227 0.95573 1.02581 1.21662 0.97426 1.02998 0.93641 1.20286 1.01972 0.88747 0.96339 1.23076 0.93569 1.00532 0.89523 1.22926 0.90841 0.86440 1.02813 1.88164 1.45988 1.50609 1.42618 0.93622 0.77819 0.95322 0.94607 0.89919 0.87738 0.89783 0.89047 0.91323 0.90465 0.89935 0.90924 0.88625 0.88727 0.86501 0.90241 0.93000 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.39 5.49 -59.91 -0.33 -19.72 16 10 C 0.16 3.46 5.96 -4.04 -0.02 3.43 16 11 C 0.07 1.33 2.88 -26.36 -0.08 1.26 16 12 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 13 C 0.09 1.31 5.97 -3.32 -0.02 1.29 16 14 N -0.60 -8.74 3.01 -172.95 -0.52 -9.26 16 15 C 0.60 8.96 7.72 -12.11 -0.09 8.87 16 16 O -0.52 -8.74 15.52 5.36 0.08 -8.66 16 17 C -0.01 -0.11 6.86 -82.82 -0.57 -0.68 16 18 N -0.33 -3.97 8.75 33.29 0.29 -3.68 16 19 O 0.12 1.20 11.18 19.21 0.21 1.41 16 20 C -0.03 -0.28 7.38 -35.38 -0.26 -0.54 16 21 C -0.15 -1.57 6.04 -104.91 -0.63 -2.21 16 22 C -0.05 -0.40 5.71 -27.91 -0.16 -0.56 16 23 C -0.12 -0.64 5.92 -26.39 -0.16 -0.80 16 24 C -0.12 -0.46 5.88 -26.46 -0.16 -0.61 16 25 C -0.04 -0.15 6.31 -27.72 -0.17 -0.32 16 26 C 0.06 0.73 6.29 -3.53 -0.02 0.71 16 27 C 0.05 0.69 6.98 37.31 0.26 0.95 16 28 O -0.36 -6.64 10.13 -35.23 -0.36 -7.00 16 29 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.39 11.04 7.54 -40.82 -0.31 10.73 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.59 7.06 -51.93 -0.37 1.22 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.91 7.75 -51.93 -0.40 0.50 16 37 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 41 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.12 1.44 4.39 -52.46 -0.23 1.21 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -34.80 370.23 -8.44 -43.24 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.77 Total: 5.34 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.33 Total: 3.17 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.17 Total: -61.05 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.06 Total: -14.24 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.80 -8.44 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570153408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.501 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds