Wall clock time and date at job start Tue Mar 31 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47116 * 299.99788 * 3 2 1 6 6 H 1.48501 * 109.47167 * 59.99722 * 3 2 1 7 7 C 1.38810 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00543 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47307 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51212 * 60.10224 * 11 10 9 13 13 C 1.53712 * 109.48607 * 180.36333 * 11 10 9 14 14 N 1.47143 * 108.16478 * 172.40023 * 13 11 10 15 15 C 1.34773 * 120.98640 * 129.43010 * 14 13 11 16 16 O 1.21502 * 119.99614 * 353.26017 * 15 14 13 17 17 C 1.48328 * 120.00471 * 173.53796 * 15 14 13 18 18 N 1.31500 * 127.15103 * 353.23672 * 17 15 14 19 19 O 1.21435 * 111.52401 * 179.79009 * 18 17 15 20 20 C 1.33182 * 111.56764 * 0.43760 * 19 18 17 21 21 C 1.35378 * 106.63847 * 359.79483 * 20 19 18 22 22 C 1.50070 * 124.93985 * 179.80406 * 21 20 19 23 23 C 1.53541 * 108.23324 * 343.95488 * 22 21 20 24 24 C 1.53114 * 109.51183 * 49.18327 * 23 22 21 25 25 C 1.50601 * 129.60172 * 179.97438 * 20 19 18 26 26 C 1.47157 * 118.03350 * 309.15856 * 14 13 11 27 27 C 1.53297 * 108.38268 * 50.78751 * 26 14 13 28 28 O 1.42959 * 109.22246 * 307.69497 * 27 26 14 29 29 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99746 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47015 * 60.00064 * 10 9 7 32 32 H 1.08994 * 109.46924 * 300.00041 * 10 9 7 33 33 H 1.09000 * 109.83594 * 52.71423 * 13 11 10 34 34 H 1.09002 * 109.74331 * 292.02996 * 13 11 10 35 35 H 1.08999 * 109.70752 * 103.63960 * 22 21 20 36 36 H 1.08996 * 109.70540 * 224.26685 * 22 21 20 37 37 H 1.08998 * 109.46231 * 289.17413 * 23 22 21 38 38 H 1.08998 * 109.46708 * 169.19216 * 23 22 21 39 39 H 1.08995 * 109.42871 * 170.06047 * 24 23 22 40 40 H 1.09000 * 109.42744 * 50.21757 * 24 23 22 41 41 H 1.09000 * 109.69794 * 282.89821 * 25 20 19 42 42 H 1.08999 * 109.69877 * 43.49338 * 25 20 19 43 43 H 1.09006 * 109.68235 * 170.50703 * 26 14 13 44 44 H 1.08997 * 109.68198 * 291.06020 * 26 14 13 45 45 H 1.08998 * 109.51532 * 67.62306 * 27 26 14 46 46 H 1.09006 * 109.51046 * 187.77430 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.4374 -4.7639 -0.8892 13 6 1.8317 -6.1512 0.0104 14 7 0.8598 -7.2402 0.1957 15 6 0.8481 -8.3074 -0.6274 16 8 1.5631 -8.3248 -1.6096 17 6 -0.0420 -9.4579 -0.3376 18 7 -0.7794 -9.6410 0.7357 19 8 -1.4030 -10.6812 0.6758 20 6 -1.1515 -11.3383 -0.4551 21 6 -0.2688 -10.5855 -1.1528 22 6 0.2975 -10.9474 -2.4945 23 6 0.0391 -12.4412 -2.7380 24 6 -1.4304 -12.7598 -2.4491 25 6 -1.6972 -12.6548 -0.9421 26 6 -0.0953 -7.1327 1.3101 27 6 -0.7661 -5.7561 1.2408 28 8 0.2416 -4.7446 1.1684 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6846 -3.7146 0.8906 32 1 2.6845 -3.7146 -0.8894 33 1 2.5509 -6.1576 0.8294 34 1 2.3532 -6.2819 -0.9378 35 1 -0.1912 -10.3585 -3.2708 36 1 1.3700 -10.7532 -2.5053 37 1 0.6751 -13.0319 -2.0787 38 1 0.2663 -12.6848 -3.7758 39 1 -1.6556 -13.7710 -2.7879 40 1 -2.0661 -12.0506 -2.9794 41 1 -1.1987 -13.4736 -0.4234 42 1 -2.7701 -12.6997 -0.7549 43 1 -0.8506 -7.9139 1.2230 44 1 0.4332 -7.2364 2.2577 45 1 -1.3989 -5.7036 0.3549 46 1 -1.3735 -5.6017 2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570153408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:56 Heat of formation + Delta-G solvation = -18.030164 kcal Electronic energy + Delta-G solvation = -29188.716588 eV Core-core repulsion = 25081.481008 eV Total energy + Delta-G solvation = -4107.235581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.27572 -41.56508 -39.69900 -38.58851 -36.77438 -36.00943 -35.02961 -33.92273 -32.07955 -31.94530 -31.22346 -29.57903 -27.78383 -25.88598 -25.19598 -24.80929 -23.78160 -23.69333 -22.33505 -21.10277 -20.34783 -19.27223 -18.98353 -18.46653 -18.08771 -17.75460 -17.23946 -16.77909 -16.59712 -16.11537 -16.07573 -15.82878 -15.40609 -15.12498 -14.94040 -14.83993 -14.56051 -14.46929 -14.27291 -14.20995 -14.07156 -13.49488 -13.27331 -13.15871 -12.84283 -12.73206 -12.41152 -12.35055 -12.05417 -11.98899 -11.91274 -11.85389 -11.77728 -11.56467 -11.38800 -11.33989 -11.19280 -10.99454 -10.15211 -9.84591 -9.03497 -7.95736 -5.25790 -0.13919 0.55541 1.37949 1.46742 1.48427 1.58672 1.81098 1.85482 2.54444 2.56865 2.68800 3.26289 3.38054 3.43745 3.57057 3.73712 3.82591 3.85234 3.94933 3.96885 3.98996 4.04924 4.17776 4.27994 4.31745 4.37909 4.42143 4.46058 4.56425 4.58113 4.62961 4.75289 4.87172 4.88369 4.91994 5.00085 5.02318 5.07960 5.16075 5.18929 5.32460 5.43309 5.47000 5.91083 6.11312 6.25362 6.57680 6.91773 7.31471 8.04617 8.29702 9.28345 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028406 B = 0.002228 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.465688 B =12565.161573 C =13009.621803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.049 0.951 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.595 3.405 16 O -0.547 6.547 17 C -0.036 4.036 18 N -0.346 5.346 19 O 0.130 5.870 20 C -0.013 4.013 21 C -0.173 4.173 22 C -0.048 4.048 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.035 4.035 26 C 0.064 3.936 27 C 0.044 3.956 28 O -0.383 6.383 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -34.067 -1.824 34.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.034 3.966 11 C 0.027 3.973 12 H 0.067 0.933 13 C -0.027 4.027 14 N -0.334 5.334 15 C 0.382 3.618 16 O -0.423 6.423 17 C -0.192 4.192 18 N -0.050 5.050 19 O 0.059 5.941 20 C -0.078 4.078 21 C -0.178 4.178 22 C -0.085 4.085 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.058 4.058 27 C -0.033 4.033 28 O -0.302 6.302 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.146 0.854 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.502 -33.075 -1.102 33.398 hybrid contribution 0.262 1.229 -0.648 1.414 sum -4.239 -31.846 -1.750 32.175 Atomic orbital electron populations 1.69858 1.06789 1.26034 1.59456 1.25659 0.96483 1.01376 1.03598 0.84987 0.78231 0.79333 0.76665 1.18799 1.21908 1.21988 1.19716 0.91643 0.85117 1.41271 0.90218 1.42417 1.05713 1.00849 1.89373 1.20772 0.92884 0.83705 0.99193 1.22598 0.92400 0.94184 0.88115 0.93304 1.22350 0.91129 0.84315 1.04908 1.48082 1.35024 1.19734 1.30565 1.17246 0.81347 0.81072 0.82130 1.90757 1.43346 1.80515 1.27722 1.22869 1.02633 0.99029 0.94632 1.74403 1.08501 1.01255 1.20864 1.84664 1.49849 1.23666 1.35964 1.24898 0.98136 0.99198 0.85542 1.20944 1.02211 0.93412 1.01251 1.20062 1.00479 0.98437 0.89567 1.21726 0.97668 0.92735 1.03502 1.21701 0.95907 1.04493 0.93324 1.20636 1.03448 0.86704 0.96503 1.23094 0.93544 0.99834 0.89332 1.23153 0.90164 0.86257 1.03700 1.88106 1.47019 1.52518 1.42545 0.94000 0.79352 0.94906 0.93470 0.88681 0.87892 0.90651 0.91247 0.90834 0.89299 0.87043 0.91500 0.86265 0.86389 0.85438 0.89277 0.93468 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.57 29.55 68.60 2.03 49.59 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.74 -40.33 5.49 -343.45 -1.89 -42.22 16 10 C 0.16 6.89 5.96 86.38 0.51 7.41 16 11 C 0.09 3.16 2.88 30.84 0.09 3.25 16 12 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 13 C 0.10 2.94 5.97 86.50 0.52 3.46 16 14 N -0.60 -17.71 3.01 -819.39 -2.47 -20.18 16 15 C 0.59 18.23 7.72 86.93 0.67 18.91 16 16 O -0.55 -19.11 15.52 -3.72 -0.06 -19.17 16 17 C -0.04 -0.93 6.86 42.55 0.29 -0.63 16 18 N -0.35 -7.92 8.75 -48.95 -0.43 -8.35 16 19 O 0.13 2.35 11.18 78.75 0.88 3.23 16 20 C -0.01 -0.19 7.38 24.99 0.18 0.00 16 21 C -0.17 -3.48 6.04 -20.05 -0.12 -3.60 16 22 C -0.05 -0.82 5.71 29.83 0.17 -0.65 16 23 C -0.12 -1.00 5.92 30.81 0.18 -0.82 16 24 C -0.12 -0.49 5.88 30.77 0.18 -0.31 16 25 C -0.04 -0.16 6.31 29.95 0.19 0.03 16 26 C 0.06 1.64 6.29 86.35 0.54 2.18 16 27 C 0.04 1.27 6.98 72.08 0.50 1.77 16 28 O -0.38 -14.48 10.13 -148.98 -1.51 -15.99 16 29 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.37 22.02 7.54 -92.70 -0.70 21.32 16 31 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 3.20 7.06 -2.39 -0.02 3.18 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.46 7.75 -2.39 -0.02 1.44 16 37 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.07 0.40 8.12 -2.39 -0.02 0.38 16 41 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.13 3.05 4.39 -3.44 -0.02 3.03 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.13 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -76.71 370.23 2.37 -74.35 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.31 Total: 27.09 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.22 Total: 13.22 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -4.50 Total: -132.33 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.69 Total: -31.93 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -76.71 2.37 -74.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570153408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.318 kcal (2) G-P(sol) polarization free energy of solvation -76.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds