Wall clock time and date at job start Tue Mar 31 2020 18:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48502 * 109.47193 * 270.00272 * 3 2 1 5 5 H 1.48510 * 109.46873 * 29.99857 * 3 2 1 6 6 H 1.48494 * 109.47385 * 149.99859 * 3 2 1 7 7 C 1.38810 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99770 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00451 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00245 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47042 * 174.50274 * 10 9 7 12 12 H 1.08996 * 109.70031 * 308.14797 * 11 10 9 13 13 C 1.53193 * 109.58556 * 187.79465 * 11 10 9 14 14 C 1.53045 * 109.30984 * 185.57709 * 13 11 10 15 15 C 1.53043 * 109.53534 * 61.36498 * 14 13 11 16 16 C 1.53624 * 109.24028 * 298.50336 * 15 14 13 17 17 N 1.46923 * 109.58756 * 68.50327 * 11 10 9 18 18 C 1.34780 * 120.63170 * 353.36839 * 17 11 10 19 19 O 1.21503 * 119.99766 * 6.66498 * 18 17 11 20 20 C 1.48327 * 120.00375 * 186.65686 * 18 17 11 21 21 N 1.31599 * 127.15121 * 6.18423 * 20 18 17 22 22 O 1.21568 * 111.54574 * 179.73505 * 21 20 18 23 23 C 1.32810 * 111.51518 * 0.37557 * 22 21 20 24 24 C 1.35710 * 106.70710 * 359.67818 * 23 22 21 25 25 C 1.50029 * 123.86771 * 180.12263 * 24 23 22 26 26 O 1.43616 * 107.82554 * 345.22354 * 25 24 23 27 27 C 1.42990 * 114.38919 * 50.02837 * 26 25 24 28 28 C 1.50672 * 130.83162 * 179.97438 * 23 22 21 29 29 H 0.96996 * 120.00312 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99293 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47362 * 54.50180 * 10 9 7 32 32 H 1.08999 * 109.46989 * 294.50173 * 10 9 7 33 33 H 1.09004 * 109.49588 * 305.52794 * 13 11 10 34 34 H 1.08992 * 109.49914 * 65.59025 * 13 11 10 35 35 H 1.09002 * 109.45455 * 181.38205 * 14 13 11 36 36 H 1.09000 * 109.45883 * 301.35523 * 14 13 11 37 37 H 1.08990 * 109.50088 * 58.58622 * 15 14 13 38 38 H 1.09002 * 109.49260 * 178.65359 * 15 14 13 39 39 H 1.08993 * 109.74172 * 295.12311 * 16 15 14 40 40 H 1.09007 * 109.66039 * 174.55246 * 16 15 14 41 41 H 1.09001 * 109.78901 * 225.64303 * 25 24 23 42 42 H 1.09002 * 109.79157 * 104.80857 * 25 24 23 43 43 H 1.09000 * 109.39949 * 169.46929 * 27 26 25 44 44 H 1.09002 * 109.39877 * 49.73648 * 27 26 25 45 45 H 1.09005 * 109.81851 * 283.27453 * 28 23 22 46 46 H 1.08995 * 109.82589 * 44.13302 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6106 -2.1946 -0.1388 12 1 5.7865 -1.5444 -0.9957 13 6 6.3604 -3.5161 -0.3344 14 6 7.8672 -3.2480 -0.3331 15 6 8.2800 -2.6533 1.0152 16 6 7.5515 -1.3169 1.2235 17 7 6.1070 -1.5454 1.0821 18 6 5.2529 -1.1615 2.0516 19 8 4.0770 -1.4582 1.9777 20 6 5.7485 -0.3771 3.2088 21 7 6.9577 0.1146 3.3763 22 8 7.0533 0.7160 4.4285 23 6 5.9117 0.6951 5.1069 24 6 5.0239 -0.0040 4.3553 25 6 3.6029 -0.2603 4.7625 26 8 3.4860 0.0385 6.1624 27 6 4.0147 1.3121 6.5404 28 6 5.5476 1.2925 6.4414 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.7767 -3.0841 -0.8363 32 1 3.9250 -2.9984 0.9353 33 1 6.1117 -4.1992 0.4779 34 1 6.0705 -3.9616 -1.2859 35 1 8.4025 -4.1833 -0.4967 36 1 8.1117 -2.5455 -1.1299 37 1 8.0133 -3.3444 1.8147 38 1 9.3569 -2.4848 1.0241 39 1 7.8825 -0.5967 0.4754 40 1 7.7650 -0.9344 2.2217 41 1 3.3513 -1.3061 4.5861 42 1 2.9335 0.3825 4.1908 43 1 3.7209 1.5361 7.5660 44 1 3.6188 2.0802 5.8760 45 1 5.9622 0.6831 7.2445 46 1 5.9365 2.3084 6.5101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570517887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:41 Heat of formation + Delta-G solvation = 29.484273 kcal Electronic energy + Delta-G solvation = -31270.684319 eV Core-core repulsion = 27165.509119 eV Total energy + Delta-G solvation = -4105.175200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.30509 -41.64159 -39.96170 -38.39413 -36.76540 -35.28103 -34.40746 -33.83124 -33.65091 -32.06279 -31.56948 -28.26759 -27.63841 -26.23880 -25.15964 -25.09010 -24.11968 -22.86638 -22.15961 -21.44503 -20.41866 -19.53192 -19.10550 -18.60645 -17.86130 -17.20923 -17.03062 -16.74193 -16.57883 -16.16768 -16.02679 -15.83476 -15.58059 -15.15678 -15.02818 -14.78871 -14.62738 -14.52690 -14.27339 -13.92729 -13.89326 -13.77154 -13.48368 -13.07223 -12.97568 -12.86555 -12.55788 -12.34372 -12.11535 -12.08445 -11.88256 -11.81410 -11.58723 -11.51468 -11.29748 -11.03339 -10.96391 -10.37680 -10.29881 -9.73087 -8.99101 -7.99622 -5.22918 -0.07354 0.44279 1.23420 1.26882 1.33398 1.59342 1.81869 2.07758 2.44601 2.56781 2.76958 3.30156 3.33620 3.49070 3.56638 3.64527 3.71820 3.91786 3.94116 4.01607 4.09405 4.15116 4.20184 4.23783 4.28320 4.35751 4.39207 4.48227 4.61246 4.75496 4.76569 4.80349 4.84429 4.92215 4.94327 4.98130 5.03353 5.06485 5.17379 5.23055 5.42617 5.65385 5.76743 5.93249 6.23210 6.27337 6.79469 7.09602 7.13652 7.88147 8.06487 9.23754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008205 B = 0.006743 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3411.819576 B = 4151.598674 C = 6665.832434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.066 4.066 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.194 4.194 8 H 0.053 0.947 9 N -0.723 5.723 10 C 0.163 3.837 11 C 0.142 3.858 12 H 0.076 0.924 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.084 3.916 17 N -0.600 5.600 18 C 0.546 3.454 19 O -0.478 6.478 20 C -0.011 4.011 21 N -0.341 5.341 22 O 0.132 5.868 23 C -0.007 4.007 24 C -0.232 4.232 25 C 0.151 3.849 26 O -0.386 6.386 27 C 0.045 3.955 28 C -0.060 4.060 29 H 0.254 0.746 30 H 0.354 0.646 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.151 0.849 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.861 0.556 11.908 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.641 5.641 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.326 4.326 8 H 0.071 0.929 9 N -0.367 5.367 10 C 0.037 3.963 11 C 0.039 3.961 12 H 0.094 0.906 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.163 4.163 16 C -0.038 4.038 17 N -0.337 5.337 18 C 0.330 3.670 19 O -0.348 6.348 20 C -0.167 4.167 21 N -0.048 5.048 22 O 0.064 5.936 23 C -0.072 4.072 24 C -0.237 4.237 25 C 0.073 3.927 26 O -0.305 6.305 27 C -0.031 4.031 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.186 0.814 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.168 0.832 44 H 0.074 0.926 45 H 0.149 0.851 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.014 0.096 11.214 25.601 hybrid contribution -0.873 1.110 -0.247 1.434 sum 22.142 1.206 10.967 24.738 Atomic orbital electron populations 1.69857 1.06610 1.25956 1.61681 1.25214 0.95896 1.00128 1.04369 0.85482 0.77639 0.81233 0.77718 1.20378 1.22062 1.20642 1.18958 0.82699 0.93042 1.37883 0.92882 1.42603 1.02307 1.03267 1.88536 1.20965 0.89015 0.88285 0.98022 1.21617 0.93331 0.95479 0.85637 0.90587 1.21876 0.96203 0.94463 1.03251 1.21517 0.93973 1.02293 0.97196 1.21955 1.00978 0.95229 0.98133 1.22583 0.77658 0.98812 1.04757 1.47901 1.07979 1.59839 1.17964 1.17508 0.85885 0.81442 0.82199 1.91216 1.16276 1.53127 1.74208 1.23158 0.91328 1.03669 0.98565 1.74453 1.18453 1.10884 1.01055 1.84594 1.33217 1.53113 1.22633 1.24675 0.84117 0.99658 0.98794 1.21473 1.00974 1.05765 0.95516 1.20585 0.88309 1.02022 0.81750 1.88094 1.81634 1.38017 1.22738 1.23166 0.91166 0.84608 1.04136 1.21354 0.97122 1.04498 0.86796 0.93707 0.81373 0.95099 0.95213 0.92049 0.88977 0.89321 0.90886 0.92491 0.88229 0.90971 0.87361 0.88284 0.92646 0.83169 0.92612 0.85090 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -67.20 13.97 21.65 0.30 -66.89 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 3 Si 0.95 50.70 27.74 68.60 1.90 52.61 16 4 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 5 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 6 H -0.28 -14.57 6.52 99.48 0.65 -13.92 16 7 C -0.19 -12.07 10.20 84.03 0.86 -11.21 16 8 H 0.05 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.72 -37.76 3.02 -343.46 -1.04 -38.80 16 10 C 0.16 6.97 4.87 86.38 0.42 7.40 16 11 C 0.14 4.58 2.93 44.98 0.13 4.71 16 12 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.12 -2.78 5.37 30.67 0.16 -2.61 16 14 C -0.11 -1.93 5.88 30.62 0.18 -1.75 16 15 C -0.12 -2.30 6.10 30.82 0.19 -2.11 16 16 C 0.08 2.08 6.18 86.51 0.53 2.61 16 17 N -0.60 -19.77 2.97 -797.02 -2.36 -22.14 16 18 C 0.55 21.74 7.04 86.93 0.61 22.35 16 19 O -0.48 -23.06 10.20 -3.73 -0.04 -23.09 16 20 C -0.01 -0.37 6.86 42.46 0.29 -0.08 16 21 N -0.34 -10.03 8.70 -48.98 -0.43 -10.46 16 22 O 0.13 3.24 11.17 81.74 0.91 4.15 16 23 C -0.01 -0.16 7.50 25.09 0.19 0.03 16 24 C -0.23 -7.48 6.15 -20.07 -0.12 -7.60 16 25 C 0.15 5.15 6.67 71.03 0.47 5.63 16 26 O -0.39 -10.61 10.76 -148.98 -1.60 -12.21 16 27 C 0.05 0.76 6.77 72.19 0.49 1.25 16 28 C -0.06 -0.76 6.56 30.05 0.20 -0.56 16 29 H 0.25 16.46 8.31 -92.71 -0.77 15.69 16 30 H 0.35 18.43 4.83 -92.71 -0.45 17.99 16 31 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 32 H 0.03 1.42 6.35 -2.39 -0.02 1.40 16 33 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.83 4.16 -13.30 -0.06 2.78 16 41 H 0.10 3.73 8.11 -2.39 -0.02 3.72 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 45 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.07 357.58 3.18 -79.89 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.46 Total: 22.64 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.07 Total: 14.31 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -3.52 Total: -138.29 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.73 Total: -31.15 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.90 Total: 52.61 kcal Total: -83.07 3.18 -79.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570517887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.370 kcal (2) G-P(sol) polarization free energy of solvation -83.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds