Wall clock time and date at job start Tue Mar 31 2020 19:03:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86798 * 119.99562 * 2 1
4 4 H 1.48502 * 109.47302 * 240.00409 * 3 2 1
5 5 H 1.48502 * 109.47547 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47150 * 120.00486 * 3 2 1
7 7 C 1.38811 * 120.00491 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00064 * 189.09531 * 7 2 1
9 9 N 1.36937 * 119.99710 * 9.08459 * 7 2 1
10 10 C 1.48151 * 127.83807 * 15.60759 * 9 7 2
11 11 C 1.54387 * 104.61652 * 140.38644 * 10 9 7
12 12 H 1.09000 * 118.18146 * 244.19857 * 11 10 9
13 13 C 1.53003 * 118.11975 * 87.19135 * 11 10 9
14 14 H 1.08994 * 117.44281 * 16.06624 * 13 11 10
15 15 C 1.53004 * 117.43995 * 160.80824 * 13 11 10
16 16 N 1.46497 * 109.46811 * 185.00206 * 15 13 11
17 17 C 1.34779 * 120.00004 * 180.02562 * 16 15 13
18 18 O 1.21288 * 119.99863 * 359.97438 * 17 16 15
19 19 C 1.50702 * 120.00395 * 179.72074 * 17 16 15
20 20 C 1.52995 * 109.47151 * 180.27081 * 19 17 16
21 21 N 1.46501 * 109.46778 * 180.02562 * 20 19 17
22 22 C 1.33879 * 122.76187 * 269.70874 * 21 20 19
23 23 O 1.21230 * 125.39170 * 359.97438 * 22 21 20
24 24 C 1.51308 * 109.20812 * 179.84572 * 22 21 20
25 25 C 1.54233 * 103.55696 * 0.38641 * 24 22 21
26 26 C 1.33872 * 122.76555 * 90.00713 * 21 20 19
27 27 O 1.21232 * 125.39655 * 0.02562 * 26 21 20
28 28 C 1.52997 * 60.55694 * 268.45424 * 13 11 10
29 29 H 1.08998 * 119.54373 * 248.23692 * 28 13 11
30 30 C 1.48147 * 127.83971 * 195.57297 * 9 7 2
31 31 H 0.97006 * 120.00325 * 359.97438 * 1 2 3
32 32 H 1.08997 * 110.40805 * 21.60290 * 10 9 7
33 33 H 1.08998 * 110.40457 * 259.16893 * 10 9 7
34 34 H 1.08994 * 109.47229 * 64.99795 * 15 13 11
35 35 H 1.09000 * 109.47124 * 304.99897 * 15 13 11
36 36 H 0.96993 * 120.00313 * 359.97438 * 16 15 13
37 37 H 1.08995 * 109.46976 * 300.27452 * 19 17 16
38 38 H 1.09007 * 109.46685 * 60.27092 * 19 17 16
39 39 H 1.09004 * 109.47343 * 299.99831 * 20 19 17
40 40 H 1.08999 * 109.47479 * 60.00073 * 20 19 17
41 41 H 1.08998 * 110.79559 * 241.78010 * 24 22 21
42 42 H 1.08997 * 110.41807 * 118.81451 * 24 22 21
43 43 H 1.08992 * 110.60504 * 241.26541 * 25 24 22
44 44 H 1.09003 * 110.73827 * 118.35492 * 25 24 22
45 45 H 1.08993 * 110.40704 * 100.82440 * 30 9 7
46 46 H 1.09005 * 110.50294 * 338.44609 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.1037 1.6966 -1.2126
5 1 1.2850 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0801 -1.2079 0.1473
9 7 1.3386 -2.3805 -0.1883
10 6 -0.0340 -2.5706 -0.7125
11 6 0.0643 -3.8160 -1.6196
12 1 -0.1225 -3.6920 -2.6862
13 6 -0.1178 -5.1925 -0.9768
14 1 -0.5672 -5.2280 0.0155
15 6 -0.4666 -6.3614 -1.9005
16 7 -0.7169 -7.5606 -1.0971
17 6 -1.0432 -8.7204 -1.7012
18 8 -1.1301 -8.7711 -2.9099
19 6 -1.2945 -9.9556 -0.8753
20 6 -1.6373 -11.1259 -1.7993
21 7 -1.8822 -12.3265 -0.9963
22 6 -0.9127 -13.1904 -0.6706
23 8 0.2527 -13.0910 -0.9895
24 6 -1.5014 -14.3088 0.1614
25 6 -2.9969 -13.9428 0.2527
26 6 -3.0948 -12.6531 -0.5327
27 8 -4.1107 -12.0168 -0.7138
28 6 1.2866 -4.5967 -1.0932
29 1 2.0102 -5.0541 -1.7678
30 6 1.8197 -3.7546 0.0859
31 1 -0.4851 0.8401 0.0004
32 1 -0.3431 -1.7012 -1.2928
33 1 -0.7317 -2.7503 0.1055
34 1 0.3641 -6.5468 -2.5812
35 1 -1.3596 -6.1162 -2.4753
36 1 -0.6470 -7.5202 -0.1306
37 1 -0.4003 -10.1964 -0.3004
38 1 -2.1263 -9.7744 -0.1945
39 1 -2.5316 -10.8851 -2.3742
40 1 -0.8056 -11.3071 -2.4801
41 1 -1.0508 -14.3314 1.1536
42 1 -1.3709 -15.2666 -0.3422
43 1 -3.2901 -13.7834 1.2902
44 1 -3.6125 -14.7178 -0.2041
45 1 1.4116 -4.1191 1.0285
46 1 2.9092 -3.7801 0.1092
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570937999.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:03:10
Heat of formation + Delta-G solvation = -68.075019 kcal
Electronic energy + Delta-G solvation = -27652.359600 eV
Core-core repulsion = 23542.953912 eV
Total energy + Delta-G solvation = -4109.405688 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.87621 -41.00388 -40.22477 -39.64557 -37.00700 -36.41905 -35.12607 -35.02639
-32.80766 -31.65161 -29.01311 -28.81030 -27.07634 -26.88668 -25.13691 -23.27944
-22.87035 -21.97892 -21.09009 -20.84518 -20.42783 -18.87973 -18.71381 -17.98679
-17.62380 -17.52727 -17.12859 -16.77227 -16.69107 -16.01020 -15.66950 -15.49919
-15.28456 -14.99908 -14.94453 -14.84231 -14.64242 -14.58473 -14.31681 -13.92447
-13.61915 -13.40873 -13.36674 -13.19187 -12.90875 -12.69776 -12.41768 -12.35635
-12.06198 -12.00548 -11.97915 -11.77950 -11.68550 -11.26628 -11.07278 -10.99238
-10.86579 -10.71750 -10.55964 -10.10412 -8.92234 -7.93030 -5.29425 0.50625
1.41045 1.45215 1.48589 1.51180 1.55078 1.69565 2.13979 2.46571
2.71473 3.23947 3.24642 3.30739 3.56245 3.60016 3.67029 3.68626
3.78923 3.82915 3.84945 4.17142 4.23153 4.25058 4.31209 4.36317
4.41350 4.51867 4.54551 4.63295 4.71401 4.77892 4.83085 4.92053
4.95015 4.99025 5.00527 5.17217 5.32248 5.40849 5.43511 5.51285
5.64744 5.82587 6.16658 6.33345 6.44924 6.73729 6.99652 7.13019
7.67029 8.45263 9.20511
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.030525 B = 0.001664 C = 0.001645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.048894 B =16824.882682 C =17015.131420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C -0.063 4.063
3 Si 0.981 3.019
4 H -0.278 1.278
5 H -0.293 1.293
6 H -0.274 1.274
7 C -0.243 4.243
8 H 0.080 0.920
9 N -0.621 5.621
10 C 0.189 3.811
11 C -0.177 4.177
12 H 0.112 0.888
13 C -0.108 4.108
14 H 0.111 0.889
15 C 0.162 3.838
16 N -0.712 5.712
17 C 0.518 3.482
18 O -0.583 6.583
19 C -0.142 4.142
20 C 0.113 3.887
21 N -0.579 5.579
22 C 0.519 3.481
23 O -0.523 6.523
24 C -0.140 4.140
25 C -0.141 4.141
26 C 0.519 3.481
27 O -0.523 6.523
28 C -0.161 4.161
29 H 0.123 0.877
30 C 0.149 3.851
31 H 0.250 0.750
32 H 0.052 0.948
33 H 0.003 0.997
34 H 0.067 0.933
35 H 0.068 0.932
36 H 0.417 0.583
37 H 0.116 0.884
38 H 0.115 0.885
39 H 0.086 0.914
40 H 0.087 0.913
41 H 0.148 0.852
42 H 0.144 0.856
43 H 0.147 0.853
44 H 0.145 0.855
45 H 0.029 0.971
46 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.571 -33.640 3.231 34.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.257 4.257
3 Si 0.808 3.192
4 H -0.204 1.204
5 H -0.219 1.219
6 H -0.199 1.199
7 C -0.372 4.372
8 H 0.098 0.902
9 N -0.345 5.345
10 C 0.064 3.936
11 C -0.198 4.198
12 H 0.130 0.870
13 C -0.127 4.127
14 H 0.129 0.871
15 C 0.039 3.961
16 N -0.364 5.364
17 C 0.305 3.695
18 O -0.464 6.464
19 C -0.183 4.183
20 C -0.009 4.009
21 N -0.321 5.321
22 C 0.311 3.689
23 O -0.397 6.397
24 C -0.179 4.179
25 C -0.179 4.179
26 C 0.311 3.689
27 O -0.397 6.397
28 C -0.180 4.180
29 H 0.141 0.859
30 C 0.024 3.976
31 H 0.059 0.941
32 H 0.071 0.929
33 H 0.021 0.979
34 H 0.085 0.915
35 H 0.086 0.914
36 H 0.254 0.746
37 H 0.134 0.866
38 H 0.134 0.866
39 H 0.105 0.895
40 H 0.106 0.894
41 H 0.166 0.834
42 H 0.162 0.838
43 H 0.165 0.835
44 H 0.163 0.837
45 H 0.047 0.953
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -5.543 -32.981 2.140 33.512
hybrid contribution 0.353 1.788 0.053 1.823
sum -5.190 -31.194 2.194 31.698
Atomic orbital electron populations
1.70083 1.06513 1.25830 1.57066 1.25750 0.96520 1.01327 1.02084
0.85132 0.77214 0.78511 0.78336 1.20400 1.21944 1.19940 1.19348
0.91347 0.83711 1.42744 0.90183 1.45522 1.13880 1.01225 1.73877
1.20793 0.86028 0.93672 0.93137 1.23930 1.04626 0.91378 0.99830
0.86997 1.22408 0.98008 0.92006 1.00312 0.87118 1.20677 1.00968
0.82152 0.92349 1.45889 1.69990 1.08918 1.11636 1.20739 0.75562
0.85090 0.88145 1.90717 1.53412 1.85958 1.16281 1.21842 1.05843
0.91427 0.99174 1.21286 1.03714 0.82879 0.93022 1.47025 1.12248
1.24007 1.48853 1.21818 0.84361 0.84076 0.78646 1.90800 1.17652
1.76349 1.54875 1.22603 0.94286 0.97720 1.03304 1.22605 0.97852
0.93398 1.04090 1.21823 0.80958 0.88242 0.77900 1.90802 1.32737
1.58211 1.57970 1.23930 0.90554 1.02233 1.01308 0.85935 1.21289
0.97700 0.84283 0.94356 0.94102 0.92943 0.97899 0.91465 0.91367
0.74587 0.86570 0.86648 0.89509 0.89449 0.83405 0.83768 0.83474
0.83735 0.95345 0.92532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.23 10.86 21.65 0.24 -57.00 16
2 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16
3 Si 0.98 45.71 29.56 68.60 2.03 47.73 16
4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16
5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
7 C -0.24 -13.71 10.35 84.03 0.87 -12.84 16
8 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16
9 N -0.62 -32.19 3.38 -688.15 -2.33 -34.51 16
10 C 0.19 9.31 5.70 86.53 0.49 9.80 16
11 C -0.18 -6.59 6.85 -9.89 -0.07 -6.66 16
12 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16
13 C -0.11 -3.07 5.39 -10.79 -0.06 -3.13 16
14 H 0.11 3.05 8.04 -2.39 -0.02 3.03 16
15 C 0.16 4.05 5.95 86.38 0.51 4.57 16
16 N -0.71 -14.55 5.56 -463.05 -2.57 -17.13 16
17 C 0.52 11.82 7.83 87.66 0.69 12.51 16
18 O -0.58 -18.23 15.98 -3.05 -0.05 -18.28 16
19 C -0.14 -2.26 6.02 29.85 0.18 -2.08 16
20 C 0.11 2.08 4.85 86.38 0.42 2.49 16
21 N -0.58 -7.68 2.55 -756.66 -1.93 -9.61 16
22 C 0.52 5.96 8.08 87.99 0.71 6.67 16
23 O -0.52 -10.61 17.47 -2.87 -0.05 -10.66 16
24 C -0.14 0.08 7.03 30.46 0.21 0.29 16
25 C -0.14 0.07 7.03 30.46 0.21 0.28 16
26 C 0.52 6.00 8.08 87.99 0.71 6.71 16
27 O -0.52 -10.71 17.48 -2.88 -0.05 -10.76 16
28 C -0.16 -5.34 6.74 -9.89 -0.07 -5.41 16
29 H 0.12 3.66 8.12 -2.39 -0.02 3.64 16
30 C 0.15 6.04 7.04 86.54 0.61 6.65 16
31 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16
32 H 0.05 2.95 6.51 -2.39 -0.02 2.93 16
33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16
34 H 0.07 1.77 7.94 -2.39 -0.02 1.75 16
35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
36 H 0.42 6.22 8.40 -92.71 -0.78 5.44 16
37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16
39 H 0.09 1.85 7.78 -2.38 -0.02 1.83 16
40 H 0.09 1.86 7.78 -2.39 -0.02 1.84 16
41 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16
42 H 0.14 -0.62 8.14 -2.39 -0.02 -0.64 16
43 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16
44 H 0.14 -0.62 8.14 -2.39 -0.02 -0.63 16
45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
46 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16
Total: -1.00 -83.19 386.80 1.39 -81.79
By element:
Atomic # 1 Polarization: 11.49 SS G_CDS: 0.22 Total: 11.71 kcal
Atomic # 6 Polarization: 10.83 SS G_CDS: 5.89 Total: 16.72 kcal
Atomic # 7 Polarization: -111.65 SS G_CDS: -6.59 Total: -118.25 kcal
Atomic # 8 Polarization: -39.56 SS G_CDS: -0.15 Total: -39.71 kcal
Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal
Total: -83.19 1.39 -81.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570937999.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.718 kcal
(2) G-P(sol) polarization free energy of solvation -83.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.793 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds