Wall clock time and date at job start Tue Mar 31 2020 18:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48505 * 109.46841 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47288 * 119.99913 * 3 2 1 7 7 C 1.37883 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99549 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46755 * 304.99458 * 11 10 9 13 13 N 1.46895 * 109.47180 * 64.99728 * 11 10 9 14 14 C 1.50703 * 109.47048 * 185.00273 * 11 10 9 15 15 O 1.21283 * 119.99488 * 259.99479 * 14 11 10 16 16 N 1.34777 * 120.00290 * 79.99919 * 14 11 10 17 17 C 1.46498 * 119.99828 * 180.27728 * 16 14 11 18 18 H 1.09002 * 110.44059 * 35.81378 * 17 16 14 19 19 C 1.54812 * 110.48411 * 273.26608 * 17 16 14 20 20 C 1.54993 * 102.09404 * 262.20237 * 19 17 16 21 21 O 1.44381 * 103.49277 * 322.98304 * 20 19 17 22 22 C 1.43748 * 106.97520 * 40.05285 * 21 20 19 23 23 H 1.09003 * 109.87395 * 92.91916 * 22 21 20 24 24 C 1.50700 * 109.87619 * 214.06599 * 22 21 20 25 25 C 1.38836 * 120.35074 * 217.55313 * 24 22 21 26 26 C 1.38379 * 118.48027 * 179.80211 * 25 24 22 27 27 C 1.38918 * 119.11413 * 0.45622 * 26 25 24 28 28 O 1.35678 * 119.68439 * 179.76608 * 27 26 25 29 29 N 1.32245 * 120.62966 * 359.78697 * 27 26 25 30 30 C 1.31969 * 121.64908 * 359.97438 * 29 27 26 31 31 H 0.97007 * 119.99691 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.47485 * 59.99786 * 9 7 2 33 33 H 1.08999 * 109.47603 * 299.99426 * 9 7 2 34 34 H 1.08997 * 109.47526 * 59.99783 * 10 9 7 35 35 H 1.09001 * 109.47137 * 299.99627 * 10 9 7 36 36 H 1.00902 * 110.99981 * 60.00247 * 13 11 10 37 37 H 1.00907 * 110.99558 * 183.95501 * 13 11 10 38 38 H 0.97001 * 119.99727 * 359.97438 * 16 14 11 39 39 H 1.08996 * 110.91009 * 20.40630 * 19 17 16 40 40 H 1.09007 * 110.90599 * 144.00941 * 19 17 16 41 41 H 1.09006 * 110.61589 * 81.47691 * 20 19 17 42 42 H 1.08994 * 110.62449 * 204.47972 * 20 19 17 43 43 H 1.08003 * 120.75514 * 0.02562 * 25 24 22 44 44 H 1.08003 * 120.43652 * 180.20018 * 26 25 24 45 45 H 0.96701 * 113.99874 * 270.02124 * 28 27 26 46 46 H 1.08001 * 119.58262 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4799 -4.9871 -0.0001 12 1 0.7875 -5.0073 0.8415 13 7 0.7285 -5.1181 -1.2556 14 6 2.4544 -6.1300 0.1238 15 8 2.7865 -6.7533 -0.8622 16 7 2.9569 -6.4594 1.3302 17 6 3.9089 -7.5665 1.4497 18 1 4.5635 -7.6013 0.5788 19 6 3.1588 -8.9103 1.6178 20 6 3.1994 -9.1149 3.1536 21 8 4.5011 -8.6135 3.5260 22 6 4.7347 -7.4304 2.7435 23 1 4.4120 -6.5495 3.2984 24 6 6.1995 -7.3195 2.4073 25 6 6.8232 -6.0793 2.3895 26 6 8.1707 -6.0227 2.0797 27 6 8.8476 -7.2006 1.7894 28 8 10.1678 -7.1580 1.4795 29 7 8.2172 -8.3629 1.8118 30 6 6.9341 -8.4492 2.1081 31 1 -0.4850 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8896 33 1 0.6239 -2.5567 0.8903 34 1 2.8717 -3.6045 0.8905 35 1 2.8716 -3.6045 -0.8895 36 1 1.3486 -5.1022 -2.0514 37 1 0.1641 -5.9545 -1.2535 38 1 2.6915 -5.9607 2.1187 39 1 2.1313 -8.8293 1.2631 40 1 3.6838 -9.7157 1.1041 41 1 2.4125 -8.5373 3.6387 42 1 3.1098 -10.1723 3.4025 43 1 6.2702 -5.1796 2.6158 44 1 8.6882 -5.0749 2.0599 45 1 10.3469 -7.0517 0.5352 46 1 6.4526 -9.4159 2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580049686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:11 Heat of formation + Delta-G solvation = -91.768908 kcal Electronic energy + Delta-G solvation = -28816.549627 eV Core-core repulsion = 24706.116494 eV Total energy + Delta-G solvation = -4110.433133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22454 -40.24862 -39.17248 -37.32407 -35.38895 -34.77061 -33.18684 -32.86101 -31.61694 -31.12654 -30.16201 -28.05529 -26.35040 -24.41599 -24.05723 -23.41411 -22.46585 -21.38699 -20.61480 -19.90015 -19.15151 -17.56890 -17.52315 -17.17894 -16.70838 -16.26773 -16.16145 -15.57758 -15.30991 -15.09146 -15.03335 -14.59167 -14.48553 -14.19472 -14.02977 -13.65596 -13.52201 -13.48265 -12.89032 -12.52539 -12.36786 -12.28227 -12.09076 -12.00756 -11.70204 -11.59970 -11.50854 -10.92600 -10.75249 -10.64063 -10.39402 -10.23247 -10.19193 -9.87591 -9.69727 -9.46295 -9.40596 -9.07923 -9.01700 -8.42971 -8.27681 -5.98979 -4.01569 0.57754 0.88875 2.60583 2.94175 3.07149 3.31821 3.37105 3.37589 3.38879 3.62340 4.06599 4.11345 4.37965 4.45111 4.48197 4.56013 4.62145 4.67527 4.75974 4.82571 4.97267 4.98303 5.02648 5.29213 5.34285 5.36476 5.42928 5.44050 5.55458 5.59463 5.64430 5.73150 5.84058 6.12449 6.16635 6.33147 6.43095 6.55782 6.99953 7.13449 7.23710 7.44676 7.57707 7.69016 7.70994 7.89589 8.06908 8.15507 8.42178 9.06153 9.61849 11.11823 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.002969 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.340938 B = 9429.384411 C =11298.111461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.486 3.514 15 O -0.549 6.549 16 N -0.724 5.724 17 C 0.119 3.881 18 H 0.103 0.897 19 C -0.164 4.164 20 C 0.045 3.955 21 O -0.362 6.362 22 C 0.121 3.879 23 H 0.090 0.910 24 C -0.151 4.151 25 C -0.043 4.043 26 C -0.183 4.183 27 C 0.311 3.689 28 O -0.484 6.484 29 N -0.504 5.504 30 C 0.150 3.850 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.013 0.987 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.348 0.652 37 H 0.334 0.666 38 H 0.404 0.596 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.402 0.598 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -18.481 6.190 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.563 4.563 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.425 6.425 16 N -0.378 5.378 17 C 0.013 3.987 18 H 0.121 0.879 19 C -0.203 4.203 20 C -0.032 4.032 21 O -0.281 6.281 22 C 0.062 3.938 23 H 0.107 0.893 24 C -0.154 4.154 25 C -0.069 4.069 26 C -0.204 4.204 27 C 0.132 3.868 28 O -0.291 6.291 29 N -0.223 5.223 30 C -0.007 4.007 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.260 0.740 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 10.546 -18.981 6.204 22.583 hybrid contribution 0.364 1.166 -0.143 1.230 sum 10.911 -17.814 6.061 21.751 Atomic orbital electron populations 1.69960 1.05962 1.26598 1.50581 1.24988 0.94805 0.99060 0.95408 0.86715 0.79630 0.83425 0.78530 1.20312 1.21296 1.20355 1.21222 0.92823 0.91318 1.50939 0.93068 1.19005 0.93526 0.89775 0.98219 1.21662 0.98870 0.92160 1.00626 1.21867 0.93485 0.93160 0.95203 0.88336 1.58991 1.26879 1.44299 1.03237 1.22859 0.82087 0.85553 0.82309 1.90660 1.60602 1.54215 1.37064 1.46257 1.46267 1.34523 1.10760 1.22267 0.90894 0.87028 0.98525 0.87894 1.23557 1.02503 0.97391 0.96839 1.23661 0.85319 1.00481 0.93716 1.88964 1.35443 1.41557 1.62135 1.21642 0.90683 0.90422 0.91064 0.89255 1.20636 0.96113 0.94868 1.03752 1.21406 0.93850 0.97671 0.93994 1.22107 0.94830 0.99432 1.04038 1.19260 0.84230 0.88061 0.95215 1.84765 1.18355 1.95097 1.30883 1.67240 1.10536 1.28770 1.15729 1.22334 0.87622 0.98691 0.92065 0.92989 0.94675 0.96876 0.92865 0.92854 0.83768 0.85419 0.76092 0.89377 0.89507 0.91558 0.88311 0.83749 0.83724 0.74023 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 10 C -0.09 -1.78 4.78 -26.73 -0.13 -1.91 16 11 C 0.08 1.20 3.15 -68.86 -0.22 0.98 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 N -0.81 -12.67 8.44 -5.65 -0.05 -12.72 16 14 C 0.49 6.72 7.06 -10.98 -0.08 6.64 16 15 O -0.55 -9.15 15.96 5.55 0.09 -9.06 16 16 N -0.72 -7.53 5.11 -52.33 -0.27 -7.80 16 17 C 0.12 1.15 2.96 -66.40 -0.20 0.95 16 18 H 0.10 1.22 7.22 -51.93 -0.37 0.85 16 19 C -0.16 -1.34 6.88 -24.72 -0.17 -1.51 16 20 C 0.04 0.31 7.72 38.21 0.29 0.61 16 21 O -0.36 -3.32 10.47 -35.23 -0.37 -3.69 16 22 C 0.12 1.07 3.43 -27.31 -0.09 0.97 16 23 H 0.09 0.70 7.51 -51.93 -0.39 0.31 16 24 C -0.15 -1.49 4.78 -104.47 -0.50 -1.99 16 25 C -0.04 -0.41 9.83 -39.31 -0.39 -0.79 16 26 C -0.18 -1.74 10.04 -39.28 -0.39 -2.13 16 27 C 0.31 3.39 7.74 -17.12 -0.13 3.26 16 28 O -0.48 -4.55 13.56 -18.74 -0.25 -4.80 16 29 N -0.50 -6.09 10.39 -13.33 -0.14 -6.23 16 30 C 0.15 1.59 10.52 -17.57 -0.18 1.41 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.35 5.61 8.58 -39.29 -0.34 5.27 16 37 H 0.33 4.50 9.06 -39.29 -0.36 4.14 16 38 H 0.40 3.44 8.28 -40.82 -0.34 3.10 16 39 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.40 1.80 9.06 45.56 0.41 2.21 16 46 H 0.16 1.49 7.73 -52.49 -0.41 1.08 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -34.82 388.82 -8.10 -42.92 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.96 Total: 10.86 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.73 Total: -5.97 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.28 Total: -52.32 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.53 Total: -17.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.82 -8.10 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.847 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds