Wall clock time and date at job start Tue Mar 31 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47164 * 269.99954 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.47076 * 149.99934 * 3 2 1 7 7 C 1.38629 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00201 * 0.02562 * 7 2 1 9 9 O 1.34816 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.35782 * 116.99752 * 185.03369 * 9 7 2 11 11 C 1.38903 * 120.00001 * 354.68819 * 10 9 7 12 12 C 1.38016 * 120.00128 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.40019 * 119.99911 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00546 * 34.71361 * 14 13 12 16 16 O 1.21593 * 119.99714 * 5.40120 * 15 14 13 17 17 N 1.34778 * 120.00421 * 185.40249 * 15 14 13 18 18 C 1.47073 * 120.87746 * 354.72029 * 17 15 14 19 19 C 1.53239 * 108.52099 * 231.16014 * 18 17 15 20 20 N 1.46897 * 109.34114 * 306.17627 * 19 18 17 21 21 C 1.46900 * 111.27177 * 63.10117 * 20 19 18 22 22 H 1.08995 * 109.51281 * 56.87023 * 21 20 19 23 23 C 1.52998 * 109.49355 * 176.93961 * 21 20 19 24 24 C 1.53001 * 109.47170 * 294.86384 * 23 21 20 25 25 O 1.42894 * 109.47693 * 180.02562 * 24 23 21 26 26 C 1.47084 * 120.88048 * 174.69588 * 17 15 14 27 27 C 1.38908 * 119.99676 * 0.24769 * 13 12 11 28 28 C 1.38010 * 119.99907 * 359.49395 * 27 13 12 29 29 H 0.97001 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00006 * 0.04875 * 11 10 9 31 31 H 1.08003 * 119.99763 * 180.02562 * 12 11 10 32 32 H 0.97002 * 120.00006 * 214.71315 * 14 13 12 33 33 H 1.08994 * 109.63360 * 350.87046 * 18 17 15 34 34 H 1.09004 * 109.62390 * 111.45697 * 18 17 15 35 35 H 1.09000 * 109.49522 * 66.13048 * 19 18 17 36 36 H 1.08999 * 109.49861 * 186.18451 * 19 18 17 37 37 H 1.00903 * 110.99926 * 298.95506 * 20 19 18 38 38 H 1.08999 * 109.47322 * 174.86597 * 23 21 20 39 39 H 1.09001 * 109.47358 * 54.86379 * 23 21 20 40 40 H 1.09004 * 109.47255 * 59.99740 * 24 23 21 41 41 H 1.09006 * 109.47410 * 300.00404 * 24 23 21 42 42 H 0.96695 * 114.00709 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.62816 * 9.13334 * 26 17 15 44 44 H 1.08997 * 109.62840 * 248.54780 * 26 17 15 45 45 H 1.07997 * 120.00048 * 179.74703 * 27 13 12 46 46 H 1.08000 * 120.00275 * 180.24556 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9734 -2.4058 -0.1056 11 6 3.2215 -3.5737 -0.0956 12 6 3.8480 -4.7988 -0.2024 13 6 5.2307 -4.8639 -0.3193 14 7 5.8663 -6.1068 -0.4271 15 6 5.2666 -7.1154 -1.0901 16 8 4.2204 -6.9192 -1.6779 17 7 5.8263 -8.3414 -1.1016 18 6 7.1463 -8.5741 -0.4963 19 6 8.0306 -9.2952 -1.5191 20 7 7.3419 -10.5037 -1.9915 21 6 6.0966 -10.1672 -2.6943 22 1 6.3166 -9.4934 -3.5223 23 6 5.4532 -11.4462 -3.2337 24 6 6.3612 -12.0638 -4.2991 25 8 5.7601 -13.2580 -4.8034 26 6 5.1330 -9.4820 -1.7195 27 6 5.9830 -3.6962 -0.3236 28 6 5.3560 -2.4710 -0.2222 29 1 -0.4850 0.8401 0.0004 30 1 2.1465 -3.5230 -0.0046 31 1 3.2633 -5.7068 -0.1950 32 1 6.7385 -6.2421 -0.0246 33 1 7.5998 -7.6199 -0.2284 34 1 7.0367 -9.1935 0.3940 35 1 8.2240 -8.6334 -2.3634 36 1 8.9750 -9.5735 -1.0515 37 1 7.1660 -11.1409 -1.2291 38 1 4.4854 -11.2078 -3.6750 39 1 5.3156 -12.1558 -2.4178 40 1 7.3290 -12.3021 -3.8578 41 1 6.4989 -11.3542 -5.1150 42 1 6.2822 -13.7041 -5.4841 43 1 4.2555 -9.1278 -2.2604 44 1 4.8300 -10.1884 -0.9468 45 1 7.0583 -3.7470 -0.4104 46 1 5.9406 -1.5629 -0.2295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:23 Heat of formation + Delta-G solvation = -57.624095 kcal Electronic energy + Delta-G solvation = -28290.173693 eV Core-core repulsion = 24181.221191 eV Total energy + Delta-G solvation = -4108.952502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89843 -39.34843 -38.52291 -37.18940 -36.59311 -34.67315 -33.73655 -32.83471 -32.28953 -30.29294 -29.38513 -28.24928 -26.49726 -25.09488 -23.96079 -23.00806 -22.33914 -21.47908 -21.11106 -19.75063 -18.75544 -17.82537 -17.66989 -17.33160 -16.75869 -16.23879 -15.91234 -15.49507 -15.20966 -14.82377 -14.77651 -14.70493 -14.12741 -13.99157 -13.88714 -13.76018 -13.67769 -13.59654 -12.77733 -12.71963 -12.41905 -12.27081 -12.24056 -11.93811 -11.78512 -11.68097 -11.61357 -11.50169 -11.30197 -10.96570 -10.73898 -10.29069 -10.27253 -10.04892 -9.66429 -9.56730 -9.29670 -8.76784 -8.50322 -8.28716 -7.03813 -6.39107 -4.04988 2.03966 2.12039 2.40516 3.17145 3.23958 3.27596 3.41135 3.61951 3.73799 3.78625 4.25233 4.38318 4.49302 4.54287 4.55100 4.67372 4.72208 4.83981 4.86161 4.90275 5.06692 5.12130 5.18223 5.30088 5.37379 5.43740 5.46303 5.54218 5.62588 5.70641 5.73333 5.98819 6.07716 6.10886 6.27383 6.42613 6.53212 6.61737 6.80752 6.83590 7.03570 7.13125 7.27296 7.30413 7.58806 7.80928 7.86116 8.04870 8.55691 8.95838 9.57528 10.68530 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.002025 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.580587 B =13824.574568 C =14541.542625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.150 3.850 11 C -0.204 4.204 12 C -0.065 4.065 13 C 0.063 3.937 14 N -0.675 5.675 15 C 0.704 3.296 16 O -0.568 6.568 17 N -0.633 5.633 18 C 0.071 3.929 19 C 0.045 3.955 20 N -0.679 5.679 21 C 0.076 3.924 22 H 0.089 0.911 23 C -0.110 4.110 24 C 0.082 3.918 25 O -0.580 6.580 26 C 0.099 3.901 27 C -0.098 4.098 28 C -0.176 4.176 29 H 0.279 0.721 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.342 0.658 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.379 0.621 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.820 -23.003 -3.008 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.098 3.902 11 C -0.224 4.224 12 C -0.085 4.085 13 C -0.030 4.030 14 N -0.325 5.325 15 C 0.406 3.594 16 O -0.444 6.444 17 N -0.372 5.372 18 C -0.054 4.054 19 C -0.086 4.086 20 N -0.308 5.308 21 C -0.035 4.035 22 H 0.108 0.892 23 C -0.148 4.148 24 C 0.005 3.995 25 O -0.386 6.386 26 C -0.026 4.026 27 C -0.119 4.119 28 C -0.196 4.196 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.233 0.767 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.226 0.774 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.821 -22.378 -3.558 28.827 hybrid contribution 0.520 0.741 0.601 1.087 sum 18.341 -21.637 -2.957 28.518 Atomic orbital electron populations 1.69662 1.05554 1.28444 1.48054 1.24474 0.95042 0.98827 0.95759 0.86168 0.80279 0.81425 0.78927 1.19910 1.20828 1.18378 1.20775 0.76892 0.96670 1.52053 0.87592 1.83567 1.22611 1.25587 1.80426 1.19126 0.91660 0.85579 0.93860 1.21207 1.01277 0.91250 1.08620 1.20763 0.92642 0.97756 0.97376 1.17080 0.92002 0.82766 1.11109 1.42503 1.22457 1.10382 1.57112 1.15818 0.83782 0.80063 0.79721 1.90968 1.23667 1.81678 1.48115 1.47243 1.19991 1.07762 1.62244 1.22417 0.84175 1.01937 0.96875 1.22404 0.96674 0.91693 0.97800 1.60685 1.23825 1.14522 1.31809 1.21909 0.88772 0.96179 0.96600 0.89239 1.21440 0.99206 0.95544 0.98618 1.22077 0.95984 0.85852 0.95608 1.86445 1.51326 1.40613 1.60220 1.22175 0.96816 0.87140 0.96498 1.20302 0.98320 0.90515 1.02720 1.19967 0.91881 0.97189 1.10523 0.91077 0.84566 0.86046 0.76732 0.89895 0.91186 0.90208 0.89149 0.83931 0.90301 0.90948 0.92339 0.93986 0.77424 0.87957 0.91562 0.86680 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.96 55.48 0.77 -24.95 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -11.10 9.94 30.88 0.31 -10.79 16 8 H 0.11 3.11 5.43 -52.49 -0.28 2.83 16 9 O -0.22 -5.76 8.58 -0.01 0.00 -5.76 16 10 C 0.15 3.51 6.65 -39.09 -0.26 3.25 16 11 C -0.20 -4.62 9.16 -39.42 -0.36 -4.99 16 12 C -0.07 -1.32 8.64 -39.41 -0.34 -1.66 16 13 C 0.06 1.11 6.26 -83.62 -0.52 0.58 16 14 N -0.68 -9.24 5.25 -14.18 -0.07 -9.31 16 15 C 0.70 10.40 8.04 -86.92 -0.70 9.70 16 16 O -0.57 -10.97 13.58 5.28 0.07 -10.90 16 17 N -0.63 -6.52 3.01 -178.19 -0.54 -7.05 16 18 C 0.07 0.45 6.51 -3.61 -0.02 0.43 16 19 C 0.04 0.23 6.70 -3.70 -0.02 0.21 16 20 N -0.68 -3.86 5.94 -106.46 -0.63 -4.49 16 21 C 0.08 0.55 2.56 -67.59 -0.17 0.38 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.11 -0.76 5.22 -26.73 -0.14 -0.90 16 24 C 0.08 0.56 6.94 37.16 0.26 0.82 16 25 O -0.58 -4.44 13.66 -35.23 -0.48 -4.93 16 26 C 0.10 0.91 5.87 -3.60 -0.02 0.89 16 27 C -0.10 -1.63 9.96 -39.42 -0.39 -2.02 16 28 C -0.18 -3.42 9.98 -39.42 -0.39 -3.82 16 29 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.14 3.26 5.63 -52.49 -0.30 2.96 16 31 H 0.12 2.49 6.52 -52.48 -0.34 2.15 16 32 H 0.40 3.90 6.36 -40.82 -0.26 3.64 16 33 H 0.08 0.44 5.74 -51.93 -0.30 0.15 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 1.63 8.78 -39.29 -0.35 1.28 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.37 7.76 -51.93 -0.40 -0.03 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.38 1.24 9.12 45.56 0.42 1.66 16 43 H 0.10 1.19 7.04 -51.93 -0.37 0.82 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 46 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -34.63 373.79 -8.53 -43.16 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.54 Total: 7.90 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -2.88 Total: -6.26 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.47 Total: -45.80 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.41 Total: -21.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.63 -8.53 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.460 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds