Wall clock time and date at job start Tue Mar 31 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47164 * 269.99954 * 3 2 1 5 5 H 1.48499 * 109.47222 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.47076 * 149.99934 * 3 2 1 7 7 C 1.38629 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00201 * 0.02562 * 7 2 1 9 9 O 1.34816 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.35782 * 116.99752 * 185.03369 * 9 7 2 11 11 C 1.38903 * 120.00001 * 354.68819 * 10 9 7 12 12 C 1.38016 * 120.00128 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.40019 * 119.99911 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00546 * 34.71361 * 14 13 12 16 16 O 1.21593 * 119.99714 * 5.40120 * 15 14 13 17 17 N 1.34778 * 120.00421 * 185.40249 * 15 14 13 18 18 C 1.47073 * 120.87746 * 354.72029 * 17 15 14 19 19 C 1.53239 * 108.52099 * 231.16014 * 18 17 15 20 20 N 1.46897 * 109.34114 * 306.17627 * 19 18 17 21 21 C 1.46900 * 111.27177 * 63.10117 * 20 19 18 22 22 H 1.08995 * 109.51281 * 56.87023 * 21 20 19 23 23 C 1.52998 * 109.49355 * 176.93961 * 21 20 19 24 24 C 1.53001 * 109.47170 * 294.86384 * 23 21 20 25 25 O 1.42894 * 109.47693 * 180.02562 * 24 23 21 26 26 C 1.47084 * 120.88048 * 174.69588 * 17 15 14 27 27 C 1.38908 * 119.99676 * 0.24769 * 13 12 11 28 28 C 1.38010 * 119.99907 * 359.49395 * 27 13 12 29 29 H 0.97001 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00006 * 0.04875 * 11 10 9 31 31 H 1.08003 * 119.99763 * 180.02562 * 12 11 10 32 32 H 0.97002 * 120.00006 * 214.71315 * 14 13 12 33 33 H 1.08994 * 109.63360 * 350.87046 * 18 17 15 34 34 H 1.09004 * 109.62390 * 111.45697 * 18 17 15 35 35 H 1.09000 * 109.49522 * 66.13048 * 19 18 17 36 36 H 1.08999 * 109.49861 * 186.18451 * 19 18 17 37 37 H 1.00903 * 110.99926 * 298.95506 * 20 19 18 38 38 H 1.08999 * 109.47322 * 174.86597 * 23 21 20 39 39 H 1.09001 * 109.47358 * 54.86379 * 23 21 20 40 40 H 1.09004 * 109.47255 * 59.99740 * 24 23 21 41 41 H 1.09006 * 109.47410 * 300.00404 * 24 23 21 42 42 H 0.96695 * 114.00709 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.62816 * 9.13334 * 26 17 15 44 44 H 1.08997 * 109.62840 * 248.54780 * 26 17 15 45 45 H 1.07997 * 120.00048 * 179.74703 * 27 13 12 46 46 H 1.08000 * 120.00275 * 180.24556 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9734 -2.4058 -0.1056 11 6 3.2215 -3.5737 -0.0956 12 6 3.8480 -4.7988 -0.2024 13 6 5.2307 -4.8639 -0.3193 14 7 5.8663 -6.1068 -0.4271 15 6 5.2666 -7.1154 -1.0901 16 8 4.2204 -6.9192 -1.6779 17 7 5.8263 -8.3414 -1.1016 18 6 7.1463 -8.5741 -0.4963 19 6 8.0306 -9.2952 -1.5191 20 7 7.3419 -10.5037 -1.9915 21 6 6.0966 -10.1672 -2.6943 22 1 6.3166 -9.4934 -3.5223 23 6 5.4532 -11.4462 -3.2337 24 6 6.3612 -12.0638 -4.2991 25 8 5.7601 -13.2580 -4.8034 26 6 5.1330 -9.4820 -1.7195 27 6 5.9830 -3.6962 -0.3236 28 6 5.3560 -2.4710 -0.2222 29 1 -0.4850 0.8401 0.0004 30 1 2.1465 -3.5230 -0.0046 31 1 3.2633 -5.7068 -0.1950 32 1 6.7385 -6.2421 -0.0246 33 1 7.5998 -7.6199 -0.2284 34 1 7.0367 -9.1935 0.3940 35 1 8.2240 -8.6334 -2.3634 36 1 8.9750 -9.5735 -1.0515 37 1 7.1660 -11.1409 -1.2291 38 1 4.4854 -11.2078 -3.6750 39 1 5.3156 -12.1558 -2.4178 40 1 7.3290 -12.3021 -3.8578 41 1 6.4989 -11.3542 -5.1150 42 1 6.2822 -13.7041 -5.4841 43 1 4.2555 -9.1278 -2.2604 44 1 4.8300 -10.1884 -0.9468 45 1 7.0583 -3.7470 -0.4104 46 1 5.9406 -1.5629 -0.2295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:22 Heat of formation + Delta-G solvation = -85.990264 kcal Electronic energy + Delta-G solvation = -28291.403743 eV Core-core repulsion = 24181.221191 eV Total energy + Delta-G solvation = -4110.182552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.98614 -40.80742 -39.64241 -38.27349 -37.65892 -35.78729 -34.88678 -34.31012 -33.45026 -31.91492 -30.24090 -29.49995 -27.55230 -26.85337 -24.65604 -24.13002 -23.56097 -22.71572 -21.90897 -20.90752 -20.11969 -19.44195 -19.03062 -18.30232 -18.06964 -16.96689 -16.78964 -16.64756 -16.30523 -15.93357 -15.76656 -15.70621 -15.53647 -15.39383 -15.33083 -14.78866 -14.66233 -14.46812 -14.32307 -14.20825 -14.02905 -13.51632 -13.32916 -13.15502 -12.90388 -12.75994 -12.51019 -12.41961 -12.30526 -12.08205 -12.01200 -11.86272 -11.50398 -11.39265 -11.06723 -10.81958 -10.70375 -10.31926 -9.88700 -9.18111 -8.64936 -8.49461 -6.22079 0.47110 0.50474 1.32467 1.36998 1.39976 1.53956 1.97247 2.29128 2.74623 2.76525 3.03782 3.14357 3.15577 3.26823 3.82438 3.92870 4.00600 4.02948 4.06356 4.11267 4.22905 4.27864 4.32136 4.44016 4.50664 4.57174 4.60825 4.69573 4.76075 4.76555 4.80767 5.01195 5.02111 5.14115 5.16094 5.17454 5.27024 5.40449 5.47124 5.56320 5.72979 5.80826 5.89728 5.90991 6.18855 6.42305 6.79042 6.83933 6.93583 7.40942 7.56385 8.62363 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.002025 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.580587 B =13824.574568 C =14541.542625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.400 4.400 8 H 0.074 0.926 9 O -0.239 6.239 10 C 0.111 3.889 11 C -0.221 4.221 12 C -0.081 4.081 13 C 0.090 3.910 14 N -0.661 5.661 15 C 0.697 3.303 16 O -0.622 6.622 17 N -0.624 5.624 18 C 0.065 3.935 19 C 0.050 3.950 20 N -0.674 5.674 21 C 0.093 3.907 22 H 0.073 0.927 23 C -0.107 4.107 24 C 0.086 3.914 25 O -0.601 6.601 26 C 0.096 3.904 27 C -0.080 4.080 28 C -0.163 4.163 29 H 0.285 0.715 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.420 0.580 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.352 0.648 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.397 0.603 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.174 0.826 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.905 -24.243 -2.624 34.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.477 4.477 8 H 0.092 0.908 9 O -0.147 6.147 10 C 0.061 3.939 11 C -0.241 4.241 12 C -0.101 4.101 13 C -0.004 4.004 14 N -0.313 5.313 15 C 0.399 3.601 16 O -0.502 6.502 17 N -0.361 5.361 18 C -0.058 4.058 19 C -0.081 4.081 20 N -0.305 5.305 21 C -0.018 4.018 22 H 0.092 0.908 23 C -0.146 4.146 24 C 0.008 3.992 25 O -0.410 6.410 26 C -0.029 4.029 27 C -0.100 4.100 28 C -0.183 4.183 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.172 0.828 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.246 0.754 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.191 0.809 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 23.010 -23.726 -3.159 33.202 hybrid contribution -0.855 0.694 0.440 1.186 sum 22.154 -23.032 -2.719 32.073 Atomic orbital electron populations 1.69760 1.07103 1.29656 1.50143 1.25378 0.95958 1.02472 0.95419 0.85125 0.78892 0.76808 0.79298 1.19113 1.19259 1.18059 1.20668 0.78273 0.95976 1.52740 0.90817 1.83505 1.20967 1.27019 1.83168 1.19663 0.93443 0.84713 0.96042 1.21085 1.00090 0.92710 1.10171 1.20728 0.94480 0.96261 0.98663 1.17206 0.90954 0.84963 1.07290 1.42280 1.23146 1.08823 1.57043 1.16072 0.83254 0.81307 0.79445 1.90952 1.26143 1.82773 1.50285 1.47308 1.21278 1.06189 1.61351 1.22792 0.81935 1.03436 0.97685 1.22456 0.97369 0.91032 0.97202 1.60659 1.22488 1.14974 1.32330 1.21641 0.88913 0.95597 0.95661 0.90829 1.21396 0.98687 0.95522 0.98960 1.22045 0.96024 0.85650 0.95448 1.86397 1.52465 1.40976 1.61113 1.22284 0.96455 0.86971 0.97221 1.20811 1.00907 0.88453 0.99788 1.20404 0.90014 0.99578 1.08254 0.90573 0.87767 0.87057 0.73848 0.88333 0.89149 0.91304 0.86199 0.82803 0.91725 0.90365 0.91412 0.94112 0.75378 0.91096 0.89988 0.80895 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.96 21.61 0.30 -56.62 16 2 C 0.01 0.34 5.49 84.82 0.47 0.80 16 3 Si 0.98 45.91 28.62 68.60 1.96 47.88 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.40 -24.37 9.94 67.91 0.68 -23.70 16 8 H 0.07 4.80 5.43 -2.91 -0.02 4.79 16 9 O -0.24 -13.16 8.58 -22.95 -0.20 -13.36 16 10 C 0.11 5.30 6.65 22.59 0.15 5.45 16 11 C -0.22 -10.67 9.16 22.38 0.20 -10.46 16 12 C -0.08 -3.37 8.64 22.38 0.19 -3.17 16 13 C 0.09 2.95 6.26 38.16 0.24 3.19 16 14 N -0.66 -15.98 5.25 -317.04 -1.66 -17.64 16 15 C 0.70 19.64 8.04 179.05 1.44 21.08 16 16 O -0.62 -24.50 13.58 -4.01 -0.05 -24.56 16 17 N -0.62 -11.50 3.01 -835.94 -2.52 -14.02 16 18 C 0.07 0.54 6.51 86.35 0.56 1.10 16 19 C 0.05 0.31 6.70 86.38 0.58 0.89 16 20 N -0.67 -5.46 5.94 -490.74 -2.92 -8.38 16 21 C 0.09 1.20 2.56 44.99 0.12 1.32 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 C -0.11 -1.38 5.22 30.59 0.16 -1.22 16 24 C 0.09 1.03 6.94 71.98 0.50 1.53 16 25 O -0.60 -8.42 13.66 -148.98 -2.03 -10.45 16 26 C 0.10 1.68 5.87 86.35 0.51 2.18 16 27 C -0.08 -2.29 9.96 22.38 0.22 -2.07 16 28 C -0.16 -5.95 9.98 22.38 0.22 -5.73 16 29 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 30 H 0.10 5.61 5.63 -2.91 -0.02 5.60 16 31 H 0.11 4.83 6.52 -2.91 -0.02 4.81 16 32 H 0.42 6.13 6.36 -92.71 -0.59 5.55 16 33 H 0.10 0.52 5.74 -2.39 -0.01 0.51 16 34 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.35 1.98 8.78 -89.69 -0.79 1.19 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.69 7.76 -2.38 -0.02 0.67 16 41 H 0.04 0.49 8.14 -2.38 -0.02 0.48 16 42 H 0.40 2.02 9.12 -74.06 -0.68 1.35 16 43 H 0.07 1.73 7.04 -2.39 -0.02 1.71 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 46 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -82.42 373.79 -1.89 -84.31 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -1.00 Total: 21.65 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 6.24 Total: -8.81 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -6.80 Total: -96.66 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.29 Total: -48.36 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.96 Total: 47.88 kcal Total: -82.42 -1.89 -84.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.683 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds