Wall clock time and date at job start Tue Mar 31 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47255 * 270.00514 * 3 2 1 5 5 H 1.48507 * 109.46592 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.47128 * 150.00033 * 3 2 1 7 7 C 1.38655 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00644 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00086 * 185.05731 * 9 7 2 11 11 C 1.38890 * 120.07066 * 354.46669 * 10 9 7 12 12 C 1.38083 * 119.93432 * 180.02562 * 11 10 9 13 13 C 1.38320 * 120.06496 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.14220 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96586 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47169 * 89.99635 * 15 14 13 17 17 C 1.34779 * 120.00039 * 179.97438 * 16 15 14 18 18 O 1.21587 * 119.99838 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00048 * 179.97438 * 17 16 15 20 20 C 1.46495 * 119.99852 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47173 * 180.02562 * 20 19 17 22 22 O 1.42903 * 110.64315 * 303.15170 * 21 20 19 23 23 C 1.54597 * 110.72281 * 180.02562 * 21 20 19 24 24 C 1.54001 * 105.13505 * 219.68318 * 23 21 20 25 25 N 1.47898 * 107.06047 * 358.77445 * 24 23 21 26 26 C 1.48534 * 105.81809 * 25.33195 * 25 24 23 27 27 C 1.38120 * 120.06443 * 0.24730 * 14 13 12 28 28 H 0.97001 * 120.00506 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03309 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96482 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.92548 * 179.97438 * 13 12 11 32 32 H 1.08997 * 109.46778 * 329.99358 * 15 14 13 33 33 H 1.08997 * 109.46533 * 209.99383 * 15 14 13 34 34 H 0.97003 * 120.00479 * 0.02562 * 16 15 14 35 35 H 0.96997 * 120.00013 * 0.02562 * 19 17 16 36 36 H 1.08996 * 109.47254 * 59.99934 * 20 19 17 37 37 H 1.09004 * 109.47088 * 299.99809 * 20 19 17 38 38 H 0.96701 * 113.99918 * 59.29485 * 22 21 20 39 39 H 1.08994 * 110.30807 * 338.59707 * 23 21 20 40 40 H 1.08995 * 110.30901 * 100.76892 * 23 21 20 41 41 H 1.08997 * 109.91311 * 118.13293 * 24 23 21 42 42 H 1.09005 * 109.91445 * 239.22610 * 24 23 21 43 43 H 1.00896 * 111.00095 * 264.81554 * 25 24 23 44 44 H 1.09003 * 110.66785 * 202.35601 * 26 25 24 45 45 H 1.09005 * 110.66703 * 79.22785 * 26 25 24 46 46 H 1.08006 * 120.03131 * 179.72595 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4573 -3.4395 0.0921 12 6 4.2025 -4.5970 0.1997 13 6 3.5686 -5.8204 0.3212 14 6 2.1876 -5.8886 0.3349 15 6 1.5011 -7.2237 0.4670 16 7 1.2859 -7.5240 1.8846 17 6 0.6831 -8.6741 2.2458 18 8 0.3184 -9.4626 1.3951 19 7 0.4855 -8.9507 3.5500 20 6 -0.1691 -10.2010 3.9426 21 6 -0.2697 -10.2670 5.4679 22 8 1.0236 -10.1460 6.0637 23 6 -0.9568 -11.5778 5.9147 24 6 -1.8687 -11.1741 7.0881 25 7 -1.6786 -9.7237 7.3063 26 6 -1.2287 -9.1736 6.0020 27 6 1.4367 -4.7349 0.2221 28 1 -0.4851 0.8400 0.0004 29 1 3.9528 -2.4846 -0.0032 30 1 5.2812 -4.5470 0.1897 31 1 4.1537 -6.7244 0.4048 32 1 2.1252 -7.9987 0.0220 33 1 0.5407 -7.1908 -0.0473 34 1 1.5765 -6.8949 2.5633 35 1 0.7768 -8.3218 4.2287 36 1 0.4151 -11.0466 3.5797 37 1 -1.1694 -10.2385 3.5110 38 1 1.4819 -9.3230 5.8452 39 1 -1.5503 -11.9908 5.0991 40 1 -0.2121 -12.3015 6.2459 41 1 -2.9095 -11.3786 6.8369 42 1 -1.5876 -11.7274 7.9842 43 1 -0.9929 -9.5532 8.0265 44 1 -0.6978 -8.2323 6.1440 45 1 -2.0749 -9.0413 5.3278 46 1 0.3580 -4.7892 0.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:32 Heat of formation + Delta-G solvation = -75.299152 kcal Electronic energy + Delta-G solvation = -27838.729539 eV Core-core repulsion = 23729.010589 eV Total energy + Delta-G solvation = -4109.718950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56263 -39.59260 -39.03975 -36.89843 -35.94299 -34.63969 -34.37928 -32.37127 -31.13838 -30.36435 -29.37572 -29.02158 -26.28221 -25.39498 -24.60466 -22.40221 -21.75132 -21.03146 -20.86254 -20.70538 -18.89608 -17.87277 -17.46310 -17.08821 -16.70316 -16.37211 -15.84944 -15.41409 -15.16316 -14.91718 -14.60383 -14.49964 -14.27819 -14.17787 -14.01856 -13.71076 -13.50158 -13.24242 -13.05511 -12.70304 -12.45097 -12.40852 -12.22369 -12.05700 -11.70964 -11.67852 -11.42417 -11.29516 -10.98854 -10.84754 -10.75308 -10.72488 -10.50429 -10.30517 -9.46330 -9.44280 -9.03518 -8.92756 -8.86893 -8.29335 -7.36736 -6.52345 -4.11958 1.81319 2.22725 2.67776 3.07921 3.08689 3.13538 3.14943 3.53063 3.69160 3.89596 3.98810 4.16905 4.27798 4.37731 4.52029 4.72413 4.83353 4.90117 5.02294 5.03725 5.22337 5.26692 5.33599 5.38542 5.43086 5.50239 5.55650 5.55870 5.72800 5.81501 5.87638 6.03795 6.14288 6.20241 6.21485 6.47671 6.51668 6.74632 6.78095 6.85645 6.96467 7.03687 7.15327 7.23864 7.32187 7.67046 7.90575 7.91894 8.51742 8.92953 9.61342 10.65326 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.002044 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.612420 B =13693.137340 C =14760.965450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.195 4.195 14 C -0.073 4.073 15 C 0.187 3.813 16 N -0.735 5.735 17 C 0.705 3.295 18 O -0.592 6.592 19 N -0.750 5.750 20 C 0.124 3.876 21 C 0.084 3.916 22 O -0.548 6.548 23 C -0.137 4.137 24 C 0.043 3.957 25 N -0.669 5.669 26 C 0.020 3.980 27 C -0.170 4.170 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.391 0.609 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.376 0.624 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.341 0.659 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -18.168 12.314 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.389 5.389 17 C 0.405 3.595 18 O -0.470 6.470 19 N -0.407 5.407 20 C -0.001 4.001 21 C 0.041 3.959 22 O -0.355 6.355 23 C -0.176 4.176 24 C -0.087 4.087 25 N -0.295 5.295 26 C -0.110 4.110 27 C -0.190 4.190 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.225 0.775 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.224 0.776 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.206 -19.066 11.698 22.370 hybrid contribution 1.962 1.728 0.235 2.625 sum 1.757 -17.339 11.933 21.122 Atomic orbital electron populations 1.70030 1.05978 1.27809 1.45679 1.25300 0.95852 0.98880 0.96446 0.85709 0.78907 0.80019 0.78781 1.19825 1.20204 1.19183 1.21323 0.91796 0.80751 1.53105 0.89028 1.83983 1.34270 1.11415 1.78231 1.19331 0.90266 0.88079 0.92738 1.21245 0.93840 0.99108 1.10266 1.20750 0.98579 0.92260 0.97892 1.20483 0.93348 0.97111 1.10473 1.19266 0.93468 0.92839 1.01817 1.20012 1.00039 0.93508 0.80094 1.45257 1.63876 1.20585 1.09210 1.15891 0.78878 0.82270 0.82451 1.90929 1.57124 1.49328 1.49609 1.44986 1.66371 1.23201 1.06181 1.21734 0.98840 0.86424 0.93140 1.23141 0.84384 0.97316 0.91076 1.86590 1.29877 1.44752 1.74239 1.22769 0.98956 0.95949 0.99930 1.22755 0.99903 0.88638 0.97405 1.62712 1.48814 1.11227 1.06752 1.23821 0.98128 0.96988 0.92087 1.20094 0.99450 0.89796 1.09691 0.91916 0.85465 0.87288 0.87505 0.91075 0.90970 0.76723 0.77511 0.90758 0.90401 0.77556 0.89308 0.89764 0.90170 0.91164 0.84283 0.90185 0.88743 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.18 -4.83 9.76 0.05 0.00 -4.82 16 10 C 0.15 3.42 6.65 -39.11 -0.26 3.16 16 11 C -0.23 -4.59 9.17 -39.40 -0.36 -4.95 16 12 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 13 C -0.19 -3.08 9.70 -39.54 -0.38 -3.46 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 15 C 0.19 2.67 5.80 -5.20 -0.03 2.64 16 16 N -0.73 -9.10 5.55 -66.42 -0.37 -9.47 16 17 C 0.71 9.24 8.57 -86.91 -0.74 8.49 16 18 O -0.59 -10.18 16.34 5.29 0.09 -10.10 16 19 N -0.75 -6.67 5.20 -65.23 -0.34 -7.01 16 20 C 0.12 1.05 4.74 -4.04 -0.02 1.03 16 21 C 0.08 0.56 1.03 -88.76 -0.09 0.47 16 22 O -0.55 -3.92 13.11 -35.23 -0.46 -4.38 16 23 C -0.14 -0.86 6.27 -25.37 -0.16 -1.02 16 24 C 0.04 0.26 7.51 -2.75 -0.02 0.24 16 25 N -0.67 -4.81 7.51 -110.08 -0.83 -5.64 16 26 C 0.02 0.13 6.42 -1.90 -0.01 0.12 16 27 C -0.17 -3.36 9.64 -39.39 -0.38 -3.74 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.13 2.61 5.64 -52.48 -0.30 2.32 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.40 4.25 8.48 -40.82 -0.35 3.91 16 35 H 0.39 2.38 7.28 -40.82 -0.30 2.08 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 38 H 0.38 1.70 7.78 45.56 0.35 2.05 16 39 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 40 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.34 2.24 8.92 -39.29 -0.35 1.89 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.71 8.02 -51.93 -0.42 0.30 16 46 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -33.14 384.34 -9.40 -42.54 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.81 Total: 11.89 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.21 Total: -9.80 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.78 Total: -46.01 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.37 Total: -19.30 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.14 -9.40 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.761 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds