Wall clock time and date at job start Tue Mar 31 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48499 * 109.47255 * 270.00514 * 3 2 1 5 5 H 1.48507 * 109.46592 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.47128 * 150.00033 * 3 2 1 7 7 C 1.38655 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00644 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00086 * 185.05731 * 9 7 2 11 11 C 1.38890 * 120.07066 * 354.46669 * 10 9 7 12 12 C 1.38083 * 119.93432 * 180.02562 * 11 10 9 13 13 C 1.38320 * 120.06496 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.14220 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96586 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47169 * 89.99635 * 15 14 13 17 17 C 1.34779 * 120.00039 * 179.97438 * 16 15 14 18 18 O 1.21587 * 119.99838 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00048 * 179.97438 * 17 16 15 20 20 C 1.46495 * 119.99852 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47173 * 180.02562 * 20 19 17 22 22 O 1.42903 * 110.64315 * 303.15170 * 21 20 19 23 23 C 1.54597 * 110.72281 * 180.02562 * 21 20 19 24 24 C 1.54001 * 105.13505 * 219.68318 * 23 21 20 25 25 N 1.47898 * 107.06047 * 358.77445 * 24 23 21 26 26 C 1.48534 * 105.81809 * 25.33195 * 25 24 23 27 27 C 1.38120 * 120.06443 * 0.24730 * 14 13 12 28 28 H 0.97001 * 120.00506 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03309 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96482 * 180.02562 * 12 11 10 31 31 H 1.08005 * 119.92548 * 179.97438 * 13 12 11 32 32 H 1.08997 * 109.46778 * 329.99358 * 15 14 13 33 33 H 1.08997 * 109.46533 * 209.99383 * 15 14 13 34 34 H 0.97003 * 120.00479 * 0.02562 * 16 15 14 35 35 H 0.96997 * 120.00013 * 0.02562 * 19 17 16 36 36 H 1.08996 * 109.47254 * 59.99934 * 20 19 17 37 37 H 1.09004 * 109.47088 * 299.99809 * 20 19 17 38 38 H 0.96701 * 113.99918 * 59.29485 * 22 21 20 39 39 H 1.08994 * 110.30807 * 338.59707 * 23 21 20 40 40 H 1.08995 * 110.30901 * 100.76892 * 23 21 20 41 41 H 1.08997 * 109.91311 * 118.13293 * 24 23 21 42 42 H 1.09005 * 109.91445 * 239.22610 * 24 23 21 43 43 H 1.00896 * 111.00095 * 264.81554 * 25 24 23 44 44 H 1.09003 * 110.66785 * 202.35601 * 26 25 24 45 45 H 1.09005 * 110.66703 * 79.22785 * 26 25 24 46 46 H 1.08006 * 120.03131 * 179.72595 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4573 -3.4395 0.0921 12 6 4.2025 -4.5970 0.1997 13 6 3.5686 -5.8204 0.3212 14 6 2.1876 -5.8886 0.3349 15 6 1.5011 -7.2237 0.4670 16 7 1.2859 -7.5240 1.8846 17 6 0.6831 -8.6741 2.2458 18 8 0.3184 -9.4626 1.3951 19 7 0.4855 -8.9507 3.5500 20 6 -0.1691 -10.2010 3.9426 21 6 -0.2697 -10.2670 5.4679 22 8 1.0236 -10.1460 6.0637 23 6 -0.9568 -11.5778 5.9147 24 6 -1.8687 -11.1741 7.0881 25 7 -1.6786 -9.7237 7.3063 26 6 -1.2287 -9.1736 6.0020 27 6 1.4367 -4.7349 0.2221 28 1 -0.4851 0.8400 0.0004 29 1 3.9528 -2.4846 -0.0032 30 1 5.2812 -4.5470 0.1897 31 1 4.1537 -6.7244 0.4048 32 1 2.1252 -7.9987 0.0220 33 1 0.5407 -7.1908 -0.0473 34 1 1.5765 -6.8949 2.5633 35 1 0.7768 -8.3218 4.2287 36 1 0.4151 -11.0466 3.5797 37 1 -1.1694 -10.2385 3.5110 38 1 1.4819 -9.3230 5.8452 39 1 -1.5503 -11.9908 5.0991 40 1 -0.2121 -12.3015 6.2459 41 1 -2.9095 -11.3786 6.8369 42 1 -1.5876 -11.7274 7.9842 43 1 -0.9929 -9.5532 8.0265 44 1 -0.6978 -8.2323 6.1440 45 1 -2.0749 -9.0413 5.3278 46 1 0.3580 -4.7892 0.2284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:32 Heat of formation + Delta-G solvation = -103.798308 kcal Electronic energy + Delta-G solvation = -27839.965355 eV Core-core repulsion = 23729.010589 eV Total energy + Delta-G solvation = -4110.954766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42882 -40.82095 -40.22086 -38.49202 -36.56460 -35.78142 -35.31650 -34.28252 -32.33871 -31.17652 -30.70807 -29.84205 -27.62571 -26.96820 -25.59055 -23.26873 -23.00044 -22.42407 -21.94774 -21.30814 -19.97498 -19.39366 -18.81836 -18.09094 -17.37963 -17.28485 -16.91686 -16.69108 -16.36355 -16.12883 -16.08394 -15.61168 -15.43386 -15.36737 -14.94549 -14.86612 -14.69118 -14.33995 -13.98062 -13.86851 -13.73959 -13.57426 -13.26853 -13.02701 -12.94994 -12.66489 -12.57076 -12.33819 -12.26461 -12.21331 -12.11103 -11.85299 -11.48323 -11.30455 -11.19839 -10.81097 -10.47140 -9.86118 -9.76644 -9.56504 -9.03052 -8.46797 -6.15212 0.36731 0.71073 1.36130 1.44520 1.53193 1.69515 2.09857 2.17677 2.80458 3.02751 3.09701 3.17394 3.32397 3.39804 3.47582 3.72911 3.83208 3.83612 4.10282 4.23825 4.28684 4.31819 4.43258 4.46710 4.53695 4.60832 4.66096 4.70664 4.74434 4.83562 4.91926 5.02225 5.02752 5.07805 5.12222 5.26367 5.33791 5.39552 5.62777 5.68222 5.71320 5.72460 5.87952 6.02106 6.17441 6.36419 6.60360 6.98118 6.99401 7.50356 7.78517 8.76230 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.002044 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.612420 B =13693.137340 C =14760.965450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.111 3.889 11 C -0.234 4.234 12 C -0.070 4.070 13 C -0.167 4.167 14 C -0.057 4.057 15 C 0.193 3.807 16 N -0.727 5.727 17 C 0.704 3.296 18 O -0.634 6.634 19 N -0.731 5.731 20 C 0.127 3.873 21 C 0.096 3.904 22 O -0.557 6.557 23 C -0.137 4.137 24 C 0.042 3.958 25 N -0.679 5.679 26 C 0.021 3.979 27 C -0.180 4.180 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.408 0.592 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.387 0.613 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.345 0.655 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -19.654 13.477 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.061 3.939 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.186 4.186 14 C -0.058 4.058 15 C 0.069 3.931 16 N -0.383 5.383 17 C 0.403 3.597 18 O -0.515 6.515 19 N -0.389 5.389 20 C 0.002 3.998 21 C 0.053 3.947 22 O -0.365 6.365 23 C -0.177 4.177 24 C -0.087 4.087 25 N -0.306 5.306 26 C -0.109 4.109 27 C -0.200 4.200 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.161 0.839 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.506 -20.585 12.916 24.430 hybrid contribution 1.240 1.815 -0.081 2.200 sum 3.746 -18.770 12.834 23.045 Atomic orbital electron populations 1.70180 1.08046 1.28771 1.48903 1.26575 0.96815 1.02765 0.95953 0.84599 0.77890 0.74647 0.79177 1.18998 1.19787 1.17433 1.21816 0.92542 0.81340 1.53066 0.87885 1.83950 1.35933 1.12574 1.81420 1.19866 0.91652 0.87847 0.94509 1.21374 0.92990 1.00423 1.10514 1.21162 1.00420 0.91134 0.96060 1.20994 0.93046 0.98233 1.06306 1.19420 0.93916 0.92436 1.00021 1.19865 0.99551 0.92404 0.81241 1.45033 1.63850 1.20711 1.08685 1.16014 0.78579 0.81845 0.83214 1.90907 1.58816 1.50642 1.51131 1.44794 1.65320 1.23586 1.05168 1.21742 0.98078 0.85607 0.94363 1.22989 0.84454 0.97684 0.89542 1.86583 1.29944 1.45722 1.74217 1.22796 0.98993 0.95666 1.00214 1.22782 0.99936 0.88259 0.97738 1.62707 1.49113 1.11846 1.06959 1.23798 0.97857 0.97423 0.91860 1.20225 0.99417 0.90120 1.10243 0.91896 0.86210 0.83387 0.83428 0.89746 0.92163 0.75496 0.75572 0.91905 0.91108 0.76252 0.88744 0.89924 0.90113 0.90304 0.83877 0.89151 0.89630 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.66 13.67 21.61 0.30 -55.36 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 41.72 29.55 68.60 2.03 43.74 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.41 -23.19 9.49 67.92 0.64 -22.54 16 8 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 9 O -0.23 -13.50 9.76 -22.74 -0.22 -13.72 16 10 C 0.11 5.24 6.65 22.58 0.15 5.39 16 11 C -0.23 -9.37 9.17 22.39 0.21 -9.16 16 12 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 13 C -0.17 -4.52 9.70 22.30 0.22 -4.31 16 14 C -0.06 -1.74 5.25 -19.88 -0.10 -1.84 16 15 C 0.19 5.10 5.80 85.63 0.50 5.60 16 16 N -0.73 -16.38 5.55 -482.31 -2.68 -19.06 16 17 C 0.70 17.24 8.57 179.05 1.53 18.77 16 18 O -0.63 -21.17 16.34 -3.99 -0.07 -21.24 16 19 N -0.73 -11.65 5.20 -478.54 -2.49 -14.14 16 20 C 0.13 2.00 4.74 86.38 0.41 2.41 16 21 C 0.10 1.14 1.03 -9.59 -0.01 1.13 16 22 O -0.56 -6.72 13.11 -148.98 -1.95 -8.67 16 23 C -0.14 -1.54 6.27 31.48 0.20 -1.34 16 24 C 0.04 0.47 7.51 86.45 0.65 1.12 16 25 N -0.68 -8.81 7.51 -502.18 -3.77 -12.58 16 26 C 0.02 0.25 6.42 86.65 0.56 0.81 16 27 C -0.18 -7.17 9.64 22.39 0.22 -6.95 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 33 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.41 7.60 8.48 -92.71 -0.79 6.82 16 35 H 0.41 3.92 7.28 -92.71 -0.68 3.24 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.25 8.10 -2.38 -0.02 1.23 16 38 H 0.39 2.46 7.78 -74.06 -0.58 1.88 16 39 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 40 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.35 3.97 8.92 -89.70 -0.80 3.17 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 1.20 8.02 -2.38 -0.02 1.18 16 46 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -76.46 384.34 -4.79 -81.25 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.78 Total: 33.43 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.85 Total: -13.65 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -8.64 Total: -101.14 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -2.24 Total: -43.64 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.46 -4.79 -81.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.546 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds