Wall clock time and date at job start Tue Mar 31 2020 18:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47408 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47217 * 60.00524 * 3 2 1 7 7 C 1.38972 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00016 * 188.70257 * 7 2 1 9 9 N 1.36973 * 120.00166 * 8.70210 * 7 2 1 10 10 C 1.46499 * 120.00237 * 218.81993 * 9 7 2 11 11 C 1.53001 * 109.47481 * 267.50936 * 10 9 7 12 12 C 1.50700 * 109.47490 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99582 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00129 * 180.02562 * 12 11 10 15 15 C 1.34785 * 120.00024 * 38.82429 * 9 7 2 16 16 O 1.21625 * 119.99395 * 5.40499 * 15 9 7 17 17 C 1.47351 * 119.99872 * 185.41361 * 15 9 7 18 18 C 1.41326 * 126.42426 * 341.10005 * 17 15 9 19 19 N 1.30445 * 108.02406 * 179.79474 * 18 17 15 20 20 N 1.39929 * 108.91577 * 0.38473 * 19 18 17 21 21 C 1.46507 * 125.74852 * 179.87116 * 20 19 18 22 22 C 1.53001 * 109.47126 * 94.69366 * 21 20 19 23 23 C 1.52997 * 109.47308 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47053 * 299.99911 * 23 22 21 25 25 C 1.53001 * 109.46991 * 59.99895 * 24 23 22 26 26 C 1.52997 * 109.47062 * 214.69171 * 21 20 19 27 27 C 1.34281 * 108.50019 * 359.60806 * 20 19 18 28 28 H 0.97004 * 119.99632 * 4.76370 * 1 2 3 29 29 H 1.08996 * 109.46924 * 27.51615 * 10 9 7 30 30 H 1.08999 * 109.46997 * 147.50963 * 10 9 7 31 31 H 1.08999 * 109.46713 * 300.00389 * 11 10 9 32 32 H 1.09003 * 109.46494 * 59.99980 * 11 10 9 33 33 H 0.96698 * 116.99934 * 180.02562 * 14 12 11 34 34 H 1.07990 * 125.98418 * 0.03953 * 18 17 15 35 35 H 1.08994 * 109.47000 * 334.69265 * 21 20 19 36 36 H 1.09003 * 109.47433 * 59.99461 * 22 21 20 37 37 H 1.08999 * 109.46812 * 300.00189 * 22 21 20 38 38 H 1.09004 * 109.46845 * 59.99809 * 23 22 21 39 39 H 1.09000 * 109.47472 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.47174 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.47289 * 299.99700 * 24 23 22 42 42 H 1.09003 * 109.47433 * 60.00388 * 25 24 23 43 43 H 1.08999 * 109.46812 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47185 * 59.99792 * 26 21 20 45 45 H 1.09004 * 109.47211 * 299.99890 * 26 21 20 46 46 H 1.08001 * 126.30201 * 180.20620 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2035 -0.0005 8 1 3.0798 -1.2090 0.1410 9 7 1.3360 -2.3829 -0.1805 10 6 1.7230 -3.5712 0.5839 11 6 2.7376 -4.3868 -0.2200 12 6 3.1362 -5.6088 0.5666 13 8 2.6574 -5.8073 1.6580 14 8 4.0230 -6.4767 0.0547 15 6 0.3178 -2.4501 -1.0610 16 8 0.0596 -1.4935 -1.7664 17 6 -0.4827 -3.6825 -1.1689 18 6 -0.1067 -4.9693 -0.7215 19 7 -1.0822 -5.7919 -0.9924 20 7 -2.1102 -5.0838 -1.6247 21 6 -3.3785 -5.6500 -2.0907 22 6 -4.4478 -5.4618 -1.0127 23 6 -5.7725 -6.0525 -1.4996 24 6 -6.2088 -5.3389 -2.7807 25 6 -5.1395 -5.5272 -3.8588 26 6 -3.8151 -4.9370 -3.3720 27 6 -1.7409 -3.7969 -1.7271 28 1 -0.4850 0.8372 -0.0698 29 1 2.1703 -3.2651 1.5295 30 1 0.8407 -4.1804 0.7798 31 1 2.2902 -4.6928 -1.1657 32 1 3.6200 -3.7774 -0.4159 33 1 4.2472 -7.2459 0.5961 34 1 0.8235 -5.2257 -0.2364 35 1 -3.2494 -6.7133 -2.2926 36 1 -4.5770 -4.3984 -0.8107 37 1 -4.1367 -5.9697 -0.0998 38 1 -5.6436 -7.1158 -1.7018 39 1 -6.5342 -5.9188 -0.7314 40 1 -7.1523 -5.7601 -3.1279 41 1 -6.3377 -4.2757 -2.5786 42 1 -5.0107 -6.5905 -4.0610 43 1 -5.4506 -5.0192 -4.7716 44 1 -3.0533 -5.0710 -4.1400 45 1 -3.9443 -3.8736 -3.1701 46 1 -2.3207 -2.9982 -2.1656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:44 Heat of formation + Delta-G solvation = -51.293951 kcal Electronic energy + Delta-G solvation = -29847.096615 eV Core-core repulsion = 25738.418608 eV Total energy + Delta-G solvation = -4108.678007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51589 -41.28892 -39.95642 -39.07504 -37.20172 -36.34155 -34.57359 -33.71339 -31.89471 -31.81570 -31.04197 -29.89367 -27.11272 -25.73594 -24.51637 -23.72823 -22.91779 -22.00820 -21.83140 -21.05605 -20.27311 -19.14378 -18.93115 -18.01471 -17.54136 -17.29961 -16.80672 -16.43257 -16.30811 -15.96037 -15.67354 -15.47827 -15.26925 -15.04628 -14.87163 -14.29576 -14.07386 -14.05820 -13.90254 -13.46918 -13.34694 -13.24405 -13.09274 -13.03465 -12.80500 -12.52942 -12.48135 -12.40722 -12.15383 -12.14175 -11.98026 -11.92293 -11.62837 -11.55244 -11.40466 -11.22696 -10.91199 -10.39422 -10.03341 -9.46453 -9.09620 -8.03901 -5.93446 0.72310 1.20113 1.34457 1.41922 1.46686 1.50187 1.59242 2.05983 2.42694 2.93203 3.25016 3.36300 3.47481 3.62840 3.77862 3.80994 3.91488 3.93729 4.01783 4.07387 4.16744 4.27000 4.32013 4.41562 4.43576 4.50527 4.53172 4.59451 4.61283 4.78667 4.84821 4.91061 4.99517 5.01132 5.11361 5.12837 5.14673 5.26600 5.31287 5.44076 5.49250 5.54481 5.63267 5.99482 6.23678 6.59737 7.03474 7.07939 7.28751 7.70928 8.46887 8.97777 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.004051 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.665958 B = 6910.703125 C = 9226.155316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.252 1.252 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.463 5.463 10 C 0.106 3.894 11 C -0.136 4.136 12 C 0.496 3.504 13 O -0.542 6.542 14 O -0.507 6.507 15 C 0.533 3.467 16 O -0.571 6.571 17 C -0.284 4.284 18 C 0.046 3.954 19 N -0.314 5.314 20 N -0.351 5.351 21 C 0.156 3.844 22 C -0.129 4.129 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.130 4.130 27 C 0.109 3.891 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.429 0.571 34 H 0.205 0.795 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -15.558 -5.023 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.208 4.208 3 Si 0.804 3.196 4 H -0.176 1.176 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.477 4.477 8 H 0.112 0.888 9 N -0.184 5.184 10 C -0.018 4.018 11 C -0.174 4.174 12 C 0.339 3.661 13 O -0.432 6.432 14 O -0.321 6.321 15 C 0.323 3.677 16 O -0.452 6.452 17 C -0.299 4.299 18 C -0.139 4.139 19 N -0.135 5.135 20 N -0.131 5.131 21 C 0.057 3.943 22 C -0.167 4.167 23 C -0.146 4.146 24 C -0.161 4.161 25 C -0.145 4.145 26 C -0.168 4.168 27 C -0.042 4.042 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.291 0.709 34 H 0.221 0.779 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.943 -15.964 -5.222 18.580 hybrid contribution 0.886 1.579 0.600 1.907 sum -7.058 -14.385 -4.622 16.676 Atomic orbital electron populations 1.70119 1.07921 1.27291 1.44284 1.26149 0.95740 1.02762 0.96160 0.85098 0.79263 0.78388 0.76829 1.17574 1.21963 1.20688 1.19553 0.92146 0.83863 1.52158 0.88850 1.43214 1.31680 1.08640 1.34879 1.21742 0.97609 0.87890 0.94570 1.21916 1.02945 0.92408 1.00170 1.23175 0.75123 0.83643 0.84168 1.90735 1.54035 1.75714 1.22757 1.84505 1.57444 1.37229 1.52908 1.17352 0.83124 0.85695 0.81575 1.90533 1.70426 1.39099 1.45126 1.20729 0.98808 0.95433 1.14946 1.24941 0.99496 0.90511 0.98938 1.76966 0.97693 1.21108 1.17754 1.48918 1.14925 1.05146 1.44068 1.21729 0.77690 0.99836 0.95086 1.21979 0.95510 1.01823 0.97411 1.21487 0.94466 1.00505 0.98125 1.21620 0.99001 1.00881 0.94569 1.21472 0.92113 1.02008 0.98890 1.21965 0.99650 1.00456 0.94761 1.22767 0.95276 0.88192 0.97989 0.93520 0.90786 0.90235 0.87015 0.85846 0.70898 0.77875 0.86981 0.92444 0.92251 0.90312 0.90464 0.89627 0.92295 0.90260 0.89938 0.91189 0.91506 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.05 10.65 21.67 0.23 -52.82 16 2 C 0.00 -0.14 4.71 84.93 0.40 0.26 16 3 Si 0.98 45.11 29.57 68.60 2.03 47.14 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.35 -19.21 9.31 84.07 0.78 -18.42 16 8 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 9 N -0.46 -23.73 2.56 -639.32 -1.64 -25.37 16 10 C 0.11 4.33 4.17 86.38 0.36 4.69 16 11 C -0.14 -4.30 5.15 29.85 0.15 -4.15 16 12 C 0.50 13.84 7.69 71.24 0.55 14.38 16 13 O -0.54 -18.12 16.74 21.96 0.37 -17.75 16 14 O -0.51 -10.33 13.42 -51.37 -0.69 -11.02 16 15 C 0.53 28.74 6.77 86.64 0.59 29.32 16 16 O -0.57 -35.50 14.10 -4.11 -0.06 -35.56 16 17 C -0.28 -12.68 5.87 -20.15 -0.12 -12.80 16 18 C 0.05 1.78 8.90 85.66 0.76 2.55 16 19 N -0.31 -11.39 12.50 -56.26 -0.70 -12.09 16 20 N -0.35 -11.43 3.50 -325.67 -1.14 -12.57 16 21 C 0.16 3.60 3.18 44.99 0.14 3.74 16 22 C -0.13 -2.71 5.53 30.59 0.17 -2.54 16 23 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 24 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 25 C -0.11 -1.37 5.92 30.58 0.18 -1.19 16 26 C -0.13 -2.50 4.83 30.58 0.15 -2.35 16 27 C 0.11 4.21 10.45 84.29 0.88 5.09 16 28 H 0.26 15.22 8.32 -92.71 -0.77 14.45 16 29 H 0.07 3.06 7.98 -2.39 -0.02 3.04 16 30 H 0.08 3.28 4.44 -2.39 -0.01 3.27 16 31 H 0.11 3.49 6.70 -2.39 -0.02 3.47 16 32 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.43 4.57 9.10 -74.06 -0.67 3.90 16 34 H 0.21 7.25 3.00 -2.92 -0.01 7.24 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.42 7.13 -2.38 -0.02 1.41 16 46 H 0.18 6.71 7.23 -2.91 -0.02 6.68 16 Total: -1.00 -79.69 369.98 4.10 -75.58 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.35 Total: 28.54 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 5.36 Total: 15.92 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -3.25 Total: -102.86 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: -0.38 Total: -64.32 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.69 4.10 -75.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.291 kcal (2) G-P(sol) polarization free energy of solvation -79.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds