Wall clock time and date at job start Tue Mar 31 2020 18:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48502 * 109.47553 * 270.00266 * 3 2 1 5 5 H 1.48503 * 109.46838 * 29.99837 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99495 * 3 2 1 7 7 C 1.38951 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99642 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00330 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.08995 * 109.47013 * 324.72129 * 17 16 14 19 19 C 1.52999 * 109.47257 * 84.72116 * 17 16 14 20 20 O 1.42898 * 109.47018 * 65.00125 * 19 17 16 21 21 C 1.53004 * 109.47065 * 204.72115 * 17 16 14 22 22 C 1.53003 * 109.46807 * 64.99542 * 21 17 16 23 23 C 1.50696 * 109.46809 * 180.02562 * 22 21 17 24 24 C 1.38239 * 120.00393 * 269.73019 * 23 22 21 25 25 C 1.38237 * 120.00282 * 179.76960 * 24 23 22 26 26 C 1.38233 * 119.99676 * 0.50123 * 25 24 23 27 27 C 1.38235 * 120.00047 * 359.75360 * 26 25 24 28 28 C 1.38230 * 119.99950 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00234 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 32 32 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 33 33 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.47083 * 185.00118 * 19 17 16 36 36 H 1.08995 * 109.47300 * 304.99882 * 19 17 16 37 37 H 0.96709 * 114.00043 * 179.97438 * 20 19 17 38 38 H 1.08993 * 109.47108 * 184.99578 * 21 17 16 39 39 H 1.08998 * 109.47048 * 305.00090 * 21 17 16 40 40 H 1.08988 * 109.47304 * 300.00405 * 22 21 17 41 41 H 1.08998 * 109.46869 * 60.00439 * 22 21 17 42 42 H 1.08008 * 119.99815 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.99891 * 180.23354 * 25 24 23 44 44 H 1.08003 * 119.99959 * 179.72108 * 26 25 24 45 45 H 1.07998 * 119.99824 * 179.97438 * 27 26 25 46 46 H 1.08009 * 119.99678 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3705 0.0000 13 7 6.0490 -3.7518 0.0006 14 6 7.3741 -3.9981 0.0002 15 8 8.1642 -3.0739 -0.0002 16 7 7.8233 -5.2688 0.0002 17 6 9.2637 -5.5364 0.0060 18 1 9.7766 -4.7771 -0.5842 19 6 9.7832 -5.5012 1.4446 20 8 9.1970 -6.5709 2.1890 21 6 9.5282 -6.9170 -0.5982 22 6 9.1228 -6.9142 -2.0735 23 6 9.3828 -8.2741 -2.6684 24 6 10.6059 -8.5521 -3.2495 25 6 10.8461 -9.8011 -3.7910 26 6 9.8595 -10.7688 -3.7606 27 6 8.6346 -10.4892 -3.1842 28 6 8.3964 -9.2420 -2.6378 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0004 31 1 5.9240 -1.8566 0.8899 32 1 5.9240 -1.8568 -0.8901 33 1 5.4187 -4.4891 0.0006 34 1 7.1930 -6.0060 0.0010 35 1 10.8676 -5.6119 1.4421 36 1 9.5162 -4.5496 1.9042 37 1 9.4823 -6.6102 3.1123 38 1 10.5888 -7.1535 -0.5133 39 1 8.9449 -7.6659 -0.0625 40 1 8.0623 -6.6776 -2.1584 41 1 9.7062 -6.1653 -2.6092 42 1 11.3751 -7.7943 -3.2776 43 1 11.8030 -10.0194 -4.2416 44 1 10.0455 -11.7432 -4.1877 45 1 7.8636 -11.2452 -3.1609 46 1 7.4392 -9.0235 -2.1878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635081992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:13 Heat of formation + Delta-G solvation = -98.151416 kcal Electronic energy + Delta-G solvation = -27725.794821 eV Core-core repulsion = 23615.084922 eV Total energy + Delta-G solvation = -4110.709899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18280 -39.51054 -38.51893 -37.48609 -35.49213 -34.46087 -33.71253 -33.40863 -31.79624 -31.14659 -30.65831 -28.22023 -27.34361 -24.45238 -24.14117 -22.83560 -21.57848 -21.04433 -20.54606 -19.63573 -18.87435 -18.10343 -17.56498 -17.03431 -16.43560 -15.73597 -15.58352 -15.54270 -15.39157 -15.01784 -14.82816 -14.53606 -14.27178 -13.92821 -13.83170 -13.70677 -13.54882 -13.35386 -13.12520 -12.86597 -12.55945 -12.46315 -12.15252 -12.11012 -11.76670 -11.65807 -11.42927 -11.22987 -11.03237 -10.97926 -10.63711 -10.26086 -10.06507 -10.02540 -9.68949 -9.21802 -9.18445 -8.92839 -8.75476 -8.65523 -8.29576 -6.40015 -3.92513 1.09156 1.13785 2.77006 3.00235 3.04893 3.13010 3.33330 3.51190 3.58964 4.04138 4.09183 4.26209 4.36586 4.55933 4.63386 4.69998 4.77707 4.83454 4.88392 4.95768 5.15048 5.15686 5.24693 5.26963 5.28967 5.41271 5.49042 5.61826 5.66299 5.71671 5.78801 5.80775 5.86446 5.87128 6.02609 6.20405 6.25387 6.38749 6.52715 6.66527 6.74876 7.08612 7.39504 7.45960 8.01365 8.20517 8.45430 8.75250 8.82704 9.30811 9.64756 10.72197 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002044 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.846561 B =13693.677736 C =14657.654516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.603 6.603 16 N -0.735 5.735 17 C 0.169 3.831 18 H 0.100 0.900 19 C 0.061 3.939 20 O -0.568 6.568 21 C -0.113 4.113 22 C -0.084 4.084 23 C -0.077 4.077 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.116 4.116 29 H 0.275 0.725 30 H 0.374 0.626 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.408 0.592 34 H 0.399 0.601 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.377 0.623 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.074 -16.344 -2.594 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.482 6.482 16 N -0.391 5.391 17 C 0.064 3.936 18 H 0.118 0.882 19 C -0.018 4.018 20 O -0.373 6.373 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.077 4.077 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.245 0.755 34 H 0.233 0.767 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.223 0.777 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.854 -16.158 -3.182 28.986 hybrid contribution 0.230 0.865 0.568 1.060 sum 24.083 -15.292 -2.614 28.648 Atomic orbital electron populations 1.69613 1.05709 1.27792 1.48264 1.25065 0.95537 0.98171 0.97180 0.86669 0.79912 0.83766 0.79132 1.19395 1.20011 1.19218 1.19437 0.78974 0.96779 1.48613 0.86101 1.42116 1.07679 1.06134 1.65537 1.19676 0.88134 0.84855 0.84881 1.90537 1.69274 1.30918 1.55581 1.20789 0.93285 0.82984 1.03141 1.44752 1.05294 1.09241 1.78921 1.15870 0.82532 0.83292 0.77737 1.90889 1.55171 1.43251 1.58926 1.45030 1.07454 1.06197 1.80416 1.20899 0.80934 0.97673 0.94133 0.88166 1.22698 0.96029 0.90176 0.92912 1.86464 1.72093 1.52097 1.26675 1.21748 1.02614 0.96386 0.94396 1.20669 1.02888 0.93263 0.95335 1.19931 0.93935 0.95968 0.97885 1.21071 0.96771 0.97013 0.98861 1.21138 0.99169 0.93655 0.99855 1.21142 0.93879 0.99346 1.00277 1.21171 0.97189 0.96935 0.98316 1.21120 0.99176 0.93303 0.99791 0.91403 0.79248 0.89993 0.89921 0.75454 0.76685 0.93087 0.92786 0.77671 0.90464 0.90178 0.90503 0.90820 0.86157 0.86262 0.86328 0.86124 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.96 55.50 0.77 -24.25 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.44 5.09 -10.96 -0.06 -13.50 16 10 C 0.44 9.67 7.85 -10.98 -0.09 9.58 16 11 O -0.58 -14.64 15.24 5.55 0.08 -14.56 16 12 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 13 N -0.72 -11.64 5.53 -66.41 -0.37 -12.00 16 14 C 0.71 10.76 8.53 -86.92 -0.74 10.02 16 15 O -0.60 -10.88 16.01 5.28 0.08 -10.80 16 16 N -0.74 -8.41 4.48 -58.68 -0.26 -8.68 16 17 C 0.17 1.64 2.37 -67.93 -0.16 1.48 16 18 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 19 C 0.06 0.56 6.84 37.16 0.25 0.81 16 20 O -0.57 -5.08 12.83 -35.23 -0.45 -5.53 16 21 C -0.11 -0.89 4.45 -26.73 -0.12 -1.01 16 22 C -0.08 -0.69 5.23 -27.88 -0.15 -0.83 16 23 C -0.08 -0.67 5.13 -104.63 -0.54 -1.21 16 24 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.13 -0.99 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 28 C -0.12 -1.01 9.70 -39.59 -0.38 -1.40 16 29 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.41 6.49 7.45 -40.82 -0.30 6.18 16 34 H 0.40 4.05 8.62 -40.82 -0.35 3.69 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.38 1.95 9.12 45.56 0.42 2.37 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 40 H 0.08 0.68 7.69 -51.94 -0.40 0.28 16 41 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -34.27 392.10 -8.65 -42.92 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -5.87 Total: 19.52 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.78 Total: 6.63 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.09 Total: -58.43 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.28 Total: -30.89 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.27 -8.65 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635081992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.229 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds