Wall clock time and date at job start Tue Mar 31 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48500 * 109.46706 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47597 * 300.00474 * 3 2 1 6 6 H 1.48507 * 109.46719 * 60.01107 * 3 2 1 7 7 C 1.38625 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00363 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00356 * 174.97027 * 9 7 2 11 11 C 1.38904 * 119.99613 * 5.34096 * 10 9 7 12 12 C 1.38012 * 120.00059 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99534 * 0.02562 * 12 11 10 14 14 N 1.40035 * 119.99942 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99638 * 35.12412 * 14 13 12 16 16 O 1.21586 * 120.00064 * 355.49608 * 15 14 13 17 17 N 1.34773 * 119.99254 * 175.49479 * 15 14 13 18 18 C 1.46507 * 119.99457 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47023 * 179.97438 * 18 17 15 20 20 N 1.46905 * 109.61312 * 59.78285 * 19 18 17 21 21 C 1.53199 * 109.54369 * 299.56541 * 19 18 17 22 22 C 1.53098 * 109.15157 * 183.15656 * 21 19 18 23 23 O 1.42908 * 109.42171 * 57.60038 * 22 21 19 24 24 C 1.42897 * 114.09834 * 298.83530 * 23 22 21 25 25 C 1.53093 * 109.41410 * 61.16333 * 24 23 22 26 26 C 1.38912 * 120.00106 * 0.24983 * 13 12 11 27 27 C 1.38007 * 119.99709 * 359.49037 * 26 13 12 28 28 H 0.97005 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00289 * 0.02562 * 11 10 9 30 30 H 1.08000 * 120.00295 * 179.97438 * 12 11 10 31 31 H 0.96993 * 119.99812 * 215.12784 * 14 13 12 32 32 H 0.96994 * 120.00840 * 359.97438 * 17 15 14 33 33 H 1.09001 * 109.46892 * 60.00476 * 18 17 15 34 34 H 1.08993 * 109.47332 * 299.99802 * 18 17 15 35 35 H 1.00905 * 111.00006 * 300.21905 * 20 19 18 36 36 H 1.00904 * 110.99976 * 64.17224 * 20 19 18 37 37 H 1.09002 * 109.54065 * 63.24932 * 21 19 18 38 38 H 1.08999 * 109.52273 * 303.05297 * 21 19 18 39 39 H 1.09001 * 109.47667 * 297.61386 * 22 21 19 40 40 H 1.08992 * 109.48135 * 177.59051 * 22 21 19 41 41 H 1.08997 * 109.47819 * 181.13790 * 24 23 22 42 42 H 1.08995 * 109.48527 * 301.16798 * 24 23 22 43 43 H 1.08992 * 109.52882 * 62.29352 * 25 24 23 44 44 H 1.09000 * 109.52363 * 182.42374 * 25 24 23 45 45 H 1.08003 * 120.00008 * 179.74663 * 26 13 12 46 46 H 1.07997 * 120.00022 * 180.25621 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3462 -0.0006 5 1 1.8911 2.3965 -1.2123 6 1 1.8912 2.3963 1.2127 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1071 11 6 3.4575 -3.4374 -0.0980 12 6 4.2050 -4.5924 -0.2069 13 6 3.5699 -5.8220 -0.3261 14 7 4.3283 -6.9940 -0.4372 15 6 5.4945 -7.1075 0.2289 16 8 5.9286 -6.1633 0.8600 17 7 6.1795 -8.2677 0.1951 18 6 7.4469 -8.3913 0.9195 19 6 8.0139 -9.7982 0.7189 20 7 8.2395 -10.0393 -0.7126 21 6 7.0232 -10.8324 1.2628 22 6 7.6328 -12.2304 1.1296 23 8 8.8776 -12.2748 1.8301 24 6 9.8591 -11.3623 1.3341 25 6 9.3392 -9.9293 1.4757 26 6 2.1824 -5.8886 -0.3410 27 6 1.4350 -4.7341 -0.2267 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4813 -0.0058 30 1 5.2837 -4.5401 -0.2003 31 1 4.0143 -7.7239 -0.9934 32 1 5.8330 -9.0211 -0.3080 33 1 7.2767 -8.2168 1.9819 34 1 8.1559 -7.6559 0.5395 35 1 7.3788 -9.9583 -1.2330 36 1 8.9431 -9.4152 -1.0779 37 1 6.0955 -10.7837 0.6926 38 1 6.8179 -10.6231 2.3127 39 1 7.8002 -12.4550 0.0762 40 1 6.9503 -12.9666 1.5541 41 1 10.7802 -11.4729 1.9062 42 1 10.0558 -11.5756 0.2835 43 1 9.1807 -9.7017 2.5297 44 1 10.0681 -9.2345 1.0585 45 1 1.6887 -6.8442 -0.4378 46 1 0.3563 -4.7862 -0.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646030630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:30 Heat of formation + Delta-G solvation = -68.794801 kcal Electronic energy + Delta-G solvation = -28220.369256 eV Core-core repulsion = 24110.932355 eV Total energy + Delta-G solvation = -4109.436900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75053 -39.92444 -38.75069 -37.06558 -36.27792 -34.08339 -33.54232 -32.14647 -31.54419 -30.46859 -30.19084 -28.42331 -26.92575 -25.23791 -24.15361 -23.24990 -22.30222 -21.55625 -20.56817 -19.79266 -18.67622 -17.95538 -17.47235 -16.66335 -16.37227 -16.35511 -16.19770 -15.88885 -15.30705 -15.13970 -14.80159 -14.60461 -14.47248 -13.96968 -13.61859 -13.59389 -13.43948 -13.33099 -12.86986 -12.86127 -12.65434 -12.53899 -12.49659 -11.74096 -11.71264 -11.57008 -11.51524 -11.04027 -11.01734 -10.74690 -10.72131 -10.41501 -10.09346 -10.02365 -9.70773 -9.32189 -9.19997 -9.18847 -8.68804 -8.19757 -6.92286 -6.43606 -4.01141 2.14037 2.24287 2.58215 3.12419 3.15757 3.21409 3.26743 3.55715 3.87451 3.98449 4.05635 4.17865 4.25274 4.36613 4.58396 4.62627 4.91603 5.06005 5.07955 5.10795 5.15900 5.26006 5.26606 5.31308 5.32702 5.45007 5.56565 5.63582 5.67345 5.74262 5.78074 6.12143 6.13775 6.19056 6.32055 6.53989 6.62287 6.73718 6.83784 6.87716 6.95484 7.10342 7.16471 7.33926 7.45291 7.79180 7.96378 8.02066 8.60468 9.02435 9.72025 10.74453 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.001891 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.000467 B =14806.569424 C =15438.080986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.220 4.220 12 C -0.064 4.064 13 C 0.051 3.949 14 N -0.674 5.674 15 C 0.699 3.301 16 O -0.573 6.573 17 N -0.749 5.749 18 C 0.112 3.888 19 C 0.107 3.893 20 N -0.834 5.834 21 C -0.141 4.141 22 C 0.069 3.931 23 O -0.386 6.386 24 C 0.070 3.930 25 C -0.141 4.141 26 C -0.094 4.094 27 C -0.178 4.178 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.397 0.603 32 H 0.390 0.610 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.340 0.660 36 H 0.346 0.654 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.234 -23.330 -1.591 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.240 4.240 12 C -0.084 4.084 13 C -0.042 4.042 14 N -0.321 5.321 15 C 0.399 3.601 16 O -0.449 6.449 17 N -0.407 5.407 18 C -0.014 4.014 19 C 0.014 3.986 20 N -0.365 5.365 21 C -0.180 4.180 22 C -0.008 4.008 23 O -0.304 6.304 24 C -0.007 4.007 25 C -0.180 4.180 26 C -0.115 4.115 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.230 0.770 32 H 0.225 0.775 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.132 0.868 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.498 -23.102 -0.582 28.394 hybrid contribution -0.297 1.400 -0.830 1.654 sum 16.202 -21.702 -1.411 27.119 Atomic orbital electron populations 1.70058 1.05922 1.27511 1.46342 1.25283 0.95858 0.98825 0.96623 0.85646 0.79206 0.80377 0.78216 1.19070 1.20168 1.20150 1.21381 0.91869 0.80815 1.52508 0.88989 1.83973 1.34264 1.11407 1.78461 1.19407 0.90267 0.88150 0.93015 1.21113 0.93562 0.98768 1.10536 1.20865 0.99857 0.90272 0.97390 1.17030 0.89468 0.84557 1.13163 1.42274 1.21556 1.18454 1.49798 1.15945 0.80829 0.83107 0.80192 1.90948 1.69143 1.37787 1.46994 1.45060 1.24848 1.13906 1.56856 1.21971 0.84569 0.97135 0.97748 1.21095 0.95804 0.92293 0.89417 1.58995 1.14459 1.60957 1.02042 1.22215 0.97921 0.95723 1.02118 1.22468 0.85305 0.95603 0.97411 1.87909 1.23308 1.60410 1.58819 1.22445 0.90968 0.87397 0.99864 1.22168 0.95773 0.99004 1.01027 1.20319 0.91341 0.97446 1.02395 1.19972 0.99453 0.89832 1.10506 0.92113 0.85232 0.85681 0.76959 0.77523 0.91036 0.91449 0.84625 0.84079 0.91019 0.90351 0.91932 0.89445 0.89342 0.91946 0.90229 0.90519 0.86823 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 8 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 9 O -0.18 -5.10 9.75 -0.01 0.00 -5.10 16 10 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 11 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 12 C -0.06 -1.30 8.69 -39.41 -0.34 -1.64 16 13 C 0.05 0.90 6.30 -83.61 -0.53 0.37 16 14 N -0.67 -8.95 5.35 -14.18 -0.08 -9.02 16 15 C 0.70 9.78 8.41 -86.92 -0.73 9.05 16 16 O -0.57 -10.76 13.78 5.29 0.07 -10.69 16 17 N -0.75 -6.62 5.04 -65.22 -0.33 -6.95 16 18 C 0.11 0.94 4.79 -4.04 -0.02 0.92 16 19 C 0.11 0.63 0.57 -131.40 -0.07 0.55 16 20 N -0.83 -3.91 7.66 0.90 0.01 -3.90 16 21 C -0.14 -0.86 4.88 -26.58 -0.13 -0.99 16 22 C 0.07 0.45 6.68 37.21 0.25 0.70 16 23 O -0.39 -3.28 10.77 -35.23 -0.38 -3.66 16 24 C 0.07 0.45 6.68 37.21 0.25 0.70 16 25 C -0.14 -0.83 5.06 -26.59 -0.13 -0.97 16 26 C -0.09 -1.64 9.96 -39.42 -0.39 -2.03 16 27 C -0.18 -3.70 9.98 -39.42 -0.39 -4.10 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.13 2.99 5.63 -52.49 -0.30 2.70 16 30 H 0.13 2.57 6.22 -52.49 -0.33 2.24 16 31 H 0.40 3.66 8.84 -40.82 -0.36 3.30 16 32 H 0.39 2.28 6.35 -40.82 -0.26 2.02 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.34 1.38 7.67 -39.29 -0.30 1.08 16 36 H 0.35 1.52 8.99 -39.29 -0.35 1.17 16 37 H 0.07 0.37 7.00 -51.93 -0.36 0.00 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 46 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -34.49 372.47 -8.30 -42.80 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.28 Total: 9.08 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.67 Total: -9.29 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.36 Total: -44.56 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.31 Total: -19.45 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -8.30 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646030630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.000 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds