Wall clock time and date at job start Tue Mar 31 2020 18:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48500 * 109.46706 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47597 * 300.00474 * 3 2 1 6 6 H 1.48507 * 109.46719 * 60.01107 * 3 2 1 7 7 C 1.38625 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00363 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00356 * 174.97027 * 9 7 2 11 11 C 1.38904 * 119.99613 * 5.34096 * 10 9 7 12 12 C 1.38012 * 120.00059 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99534 * 0.02562 * 12 11 10 14 14 N 1.40035 * 119.99942 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99638 * 35.12412 * 14 13 12 16 16 O 1.21586 * 120.00064 * 355.49608 * 15 14 13 17 17 N 1.34773 * 119.99254 * 175.49479 * 15 14 13 18 18 C 1.46507 * 119.99457 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47023 * 179.97438 * 18 17 15 20 20 N 1.46905 * 109.61312 * 59.78285 * 19 18 17 21 21 C 1.53199 * 109.54369 * 299.56541 * 19 18 17 22 22 C 1.53098 * 109.15157 * 183.15656 * 21 19 18 23 23 O 1.42908 * 109.42171 * 57.60038 * 22 21 19 24 24 C 1.42897 * 114.09834 * 298.83530 * 23 22 21 25 25 C 1.53093 * 109.41410 * 61.16333 * 24 23 22 26 26 C 1.38912 * 120.00106 * 0.24983 * 13 12 11 27 27 C 1.38007 * 119.99709 * 359.49037 * 26 13 12 28 28 H 0.97005 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00289 * 0.02562 * 11 10 9 30 30 H 1.08000 * 120.00295 * 179.97438 * 12 11 10 31 31 H 0.96993 * 119.99812 * 215.12784 * 14 13 12 32 32 H 0.96994 * 120.00840 * 359.97438 * 17 15 14 33 33 H 1.09001 * 109.46892 * 60.00476 * 18 17 15 34 34 H 1.08993 * 109.47332 * 299.99802 * 18 17 15 35 35 H 1.00905 * 111.00006 * 300.21905 * 20 19 18 36 36 H 1.00904 * 110.99976 * 64.17224 * 20 19 18 37 37 H 1.09002 * 109.54065 * 63.24932 * 21 19 18 38 38 H 1.08999 * 109.52273 * 303.05297 * 21 19 18 39 39 H 1.09001 * 109.47667 * 297.61386 * 22 21 19 40 40 H 1.08992 * 109.48135 * 177.59051 * 22 21 19 41 41 H 1.08997 * 109.47819 * 181.13790 * 24 23 22 42 42 H 1.08995 * 109.48527 * 301.16798 * 24 23 22 43 43 H 1.08992 * 109.52882 * 62.29352 * 25 24 23 44 44 H 1.09000 * 109.52363 * 182.42374 * 25 24 23 45 45 H 1.08003 * 120.00008 * 179.74663 * 26 13 12 46 46 H 1.07997 * 120.00022 * 180.25621 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3462 -0.0006 5 1 1.8911 2.3965 -1.2123 6 1 1.8912 2.3963 1.2127 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1071 11 6 3.4575 -3.4374 -0.0980 12 6 4.2050 -4.5924 -0.2069 13 6 3.5699 -5.8220 -0.3261 14 7 4.3283 -6.9940 -0.4372 15 6 5.4945 -7.1075 0.2289 16 8 5.9286 -6.1633 0.8600 17 7 6.1795 -8.2677 0.1951 18 6 7.4469 -8.3913 0.9195 19 6 8.0139 -9.7982 0.7189 20 7 8.2395 -10.0393 -0.7126 21 6 7.0232 -10.8324 1.2628 22 6 7.6328 -12.2304 1.1296 23 8 8.8776 -12.2748 1.8301 24 6 9.8591 -11.3623 1.3341 25 6 9.3392 -9.9293 1.4757 26 6 2.1824 -5.8886 -0.3410 27 6 1.4350 -4.7341 -0.2267 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4813 -0.0058 30 1 5.2837 -4.5401 -0.2003 31 1 4.0143 -7.7239 -0.9934 32 1 5.8330 -9.0211 -0.3080 33 1 7.2767 -8.2168 1.9819 34 1 8.1559 -7.6559 0.5395 35 1 7.3788 -9.9583 -1.2330 36 1 8.9431 -9.4152 -1.0779 37 1 6.0955 -10.7837 0.6926 38 1 6.8179 -10.6231 2.3127 39 1 7.8002 -12.4550 0.0762 40 1 6.9503 -12.9666 1.5541 41 1 10.7802 -11.4729 1.9062 42 1 10.0558 -11.5756 0.2835 43 1 9.1807 -9.7017 2.5297 44 1 10.0681 -9.2345 1.0585 45 1 1.6887 -6.8442 -0.4378 46 1 0.3563 -4.7862 -0.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646030630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:29 Heat of formation + Delta-G solvation = -96.379636 kcal Electronic energy + Delta-G solvation = -28221.565424 eV Core-core repulsion = 24110.932355 eV Total energy + Delta-G solvation = -4110.633069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78123 -40.85781 -40.29254 -38.39811 -37.29556 -35.45336 -34.56911 -34.06495 -32.03712 -31.84980 -30.92395 -29.78749 -27.98406 -27.14991 -24.68600 -24.18696 -23.72483 -22.91348 -21.83902 -20.34192 -20.09245 -19.51926 -18.99052 -18.18200 -17.01656 -16.88422 -16.86055 -16.84072 -16.38416 -16.18248 -16.08505 -15.82444 -15.59696 -15.46864 -15.25979 -15.03810 -14.63881 -14.30983 -14.10796 -13.82161 -13.60891 -13.48673 -13.24662 -13.20532 -13.10049 -13.00982 -12.72691 -12.44199 -12.20399 -12.12226 -11.56227 -11.46149 -11.34160 -11.22221 -10.96205 -10.60099 -10.57487 -10.20639 -9.83639 -9.67150 -8.58874 -8.47398 -6.13976 0.52555 0.58822 1.34279 1.41305 1.52079 1.53304 2.05332 2.17298 2.82535 3.06596 3.12917 3.16541 3.42495 3.52169 3.61337 3.67174 3.85468 4.09131 4.12766 4.13616 4.41612 4.45541 4.48142 4.54567 4.64262 4.66274 4.70417 4.73225 4.74761 4.86939 4.88626 5.06429 5.08563 5.13064 5.15712 5.28473 5.31213 5.36366 5.41460 5.60851 5.70792 5.92130 6.02534 6.11812 6.18898 6.37890 6.48888 6.97405 6.98069 7.48941 7.77160 8.75472 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.001891 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.000467 B =14806.569424 C =15438.080986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.228 6.228 10 C 0.105 3.895 11 C -0.229 4.229 12 C -0.076 4.076 13 C 0.081 3.919 14 N -0.660 5.660 15 C 0.696 3.304 16 O -0.621 6.621 17 N -0.721 5.721 18 C 0.115 3.885 19 C 0.121 3.879 20 N -0.828 5.828 21 C -0.140 4.140 22 C 0.068 3.932 23 O -0.409 6.409 24 C 0.070 3.930 25 C -0.141 4.141 26 C -0.077 4.077 27 C -0.179 4.179 28 H 0.273 0.727 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.423 0.577 32 H 0.410 0.590 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.347 0.653 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.168 0.832 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.643 -26.158 -2.547 31.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.134 6.134 10 C 0.054 3.946 11 C -0.249 4.249 12 C -0.096 4.096 13 C -0.014 4.014 14 N -0.309 5.309 15 C 0.397 3.603 16 O -0.501 6.501 17 N -0.379 5.379 18 C -0.012 4.012 19 C 0.027 3.973 20 N -0.360 5.360 21 C -0.178 4.178 22 C -0.009 4.009 23 O -0.328 6.328 24 C -0.007 4.007 25 C -0.180 4.180 26 C -0.097 4.097 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.261 0.739 32 H 0.248 0.752 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.185 0.815 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.944 -26.066 -1.581 31.685 hybrid contribution -0.560 1.861 -0.543 2.018 sum 17.383 -24.205 -2.124 29.876 Atomic orbital electron populations 1.70184 1.07800 1.28697 1.48901 1.26523 0.96893 1.02539 0.95958 0.84560 0.78042 0.75082 0.78714 1.18019 1.19028 1.19240 1.21789 0.92344 0.81612 1.53090 0.88634 1.83934 1.35578 1.12404 1.81531 1.19939 0.91053 0.88437 0.95137 1.21090 0.93342 0.99261 1.11212 1.20922 0.99735 0.90795 0.98191 1.17130 0.90150 0.85128 1.08980 1.42038 1.21026 1.17700 1.50165 1.16139 0.80808 0.83676 0.79704 1.90939 1.70272 1.39913 1.48969 1.44781 1.24279 1.12861 1.55992 1.22046 0.83943 0.98700 0.96523 1.20929 0.95609 0.90464 0.90265 1.58973 1.14938 1.60911 1.01193 1.22204 0.98484 0.95480 1.01671 1.22550 0.84860 0.95937 0.97519 1.87883 1.24224 1.61090 1.59602 1.22521 0.90929 0.87128 1.00105 1.22166 0.96038 0.99103 1.00666 1.20746 0.90904 0.98337 0.99754 1.20320 1.00356 0.89603 1.09596 0.91800 0.86773 0.85819 0.73865 0.75169 0.92800 0.92192 0.83887 0.83564 0.89553 0.91535 0.91535 0.88800 0.88622 0.91651 0.91051 0.89508 0.81473 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.63 13.67 21.61 0.30 -56.33 16 2 C -0.02 -1.25 5.49 84.82 0.47 -0.78 16 3 Si 1.02 44.02 29.55 68.60 2.03 46.05 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.41 -24.61 9.48 67.91 0.64 -23.97 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.86 9.75 -22.94 -0.22 -14.08 16 10 C 0.10 5.31 6.65 22.59 0.15 5.46 16 11 C -0.23 -10.83 9.16 22.38 0.20 -10.63 16 12 C -0.08 -3.08 8.69 22.38 0.19 -2.88 16 13 C 0.08 2.63 6.30 38.15 0.24 2.87 16 14 N -0.66 -14.86 5.35 -317.03 -1.69 -16.56 16 15 C 0.70 17.52 8.41 179.05 1.51 19.03 16 16 O -0.62 -22.56 13.78 -3.99 -0.05 -22.62 16 17 N -0.72 -10.43 5.04 -478.53 -2.41 -12.84 16 18 C 0.11 1.69 4.79 86.38 0.41 2.10 16 19 C 0.12 1.13 0.57 3.65 0.00 1.13 16 20 N -0.83 -5.18 7.66 -151.05 -1.16 -6.33 16 21 C -0.14 -1.34 4.88 30.69 0.15 -1.19 16 22 C 0.07 0.73 6.68 72.01 0.48 1.21 16 23 O -0.41 -6.27 10.77 -148.98 -1.60 -7.88 16 24 C 0.07 0.77 6.68 72.01 0.48 1.25 16 25 C -0.14 -1.42 5.06 30.69 0.16 -1.26 16 26 C -0.08 -2.41 9.96 22.38 0.22 -2.19 16 27 C -0.18 -7.33 9.98 22.37 0.22 -7.10 16 28 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 29 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 30 H 0.12 5.07 6.22 -2.91 -0.02 5.05 16 31 H 0.42 5.43 8.84 -92.71 -0.82 4.61 16 32 H 0.41 2.94 6.35 -92.71 -0.59 2.35 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.35 1.46 7.67 -89.69 -0.69 0.77 16 36 H 0.35 2.02 8.99 -89.69 -0.81 1.21 16 37 H 0.09 0.55 7.00 -2.39 -0.02 0.54 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.67 7.75 -2.39 -0.02 0.65 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.68 7.75 -2.39 -0.02 0.66 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 46 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -80.87 372.47 -1.13 -82.00 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -1.84 Total: 25.54 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 5.53 Total: -16.95 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -4.97 Total: -92.07 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.88 Total: -44.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -80.87 -1.13 -82.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646030630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.382 kcal (2) G-P(sol) polarization free energy of solvation -80.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds