Wall clock time and date at job start Tue Mar 31 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47314 * 299.99642 * 3 2 1 6 6 H 1.48500 * 109.47276 * 59.99972 * 3 2 1 7 7 C 1.38632 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.35779 * 116.99994 * 174.96504 * 9 7 2 11 11 C 1.38906 * 120.00297 * 5.33777 * 10 9 7 12 12 C 1.38006 * 120.00483 * 180.02562 * 11 10 9 13 13 C 1.38909 * 119.99670 * 359.97438 * 12 11 10 14 14 N 1.40030 * 120.00110 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99778 * 35.12630 * 14 13 12 16 16 O 1.21591 * 120.00128 * 355.50202 * 15 14 13 17 17 N 1.34770 * 119.99707 * 175.49794 * 15 14 13 18 18 C 1.46506 * 120.00082 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47368 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.48536 * 110.99871 * 52.60512 * 20 19 18 22 22 C 1.54927 * 103.22707 * 159.72362 * 21 20 19 23 23 C 1.54591 * 102.92338 * 322.58250 * 22 21 20 24 24 H 1.09007 * 110.31097 * 263.04297 * 23 22 21 25 25 O 1.42899 * 110.39778 * 140.92128 * 23 22 21 26 26 C 1.47900 * 111.00305 * 169.99529 * 20 19 18 27 27 C 1.38910 * 120.00115 * 0.25448 * 13 12 11 28 28 C 1.38014 * 119.99514 * 359.47341 * 27 13 12 29 29 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99591 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.99800 * 180.02562 * 12 11 10 32 32 H 0.96991 * 120.00226 * 215.40983 * 14 13 12 33 33 H 0.96997 * 120.00381 * 359.97438 * 17 15 14 34 34 H 1.09002 * 109.46787 * 300.00033 * 18 17 15 35 35 H 1.08998 * 109.47207 * 59.99471 * 18 17 15 36 36 H 1.09002 * 109.47201 * 299.99789 * 19 18 17 37 37 H 1.08998 * 109.47381 * 59.99586 * 19 18 17 38 38 H 1.09001 * 110.66347 * 278.15660 * 21 20 19 39 39 H 1.08998 * 110.67033 * 41.28331 * 21 20 19 40 40 H 1.09002 * 110.72240 * 204.22680 * 22 21 20 41 41 H 1.08997 * 110.88028 * 81.01602 * 22 21 20 42 42 H 0.96696 * 114.00233 * 64.23176 * 25 23 22 43 43 H 1.08998 * 109.91611 * 333.51513 * 26 20 19 44 44 H 1.09004 * 109.91155 * 94.79920 * 26 20 19 45 45 H 1.07991 * 120.00352 * 179.74438 * 27 13 12 46 46 H 1.07997 * 119.99934 * 180.27394 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1051 11 6 3.4578 -3.4374 -0.0951 12 6 4.2054 -4.5924 -0.2030 13 6 3.5704 -5.8222 -0.3211 14 7 4.3289 -6.9941 -0.4311 15 6 5.4952 -7.1070 0.2349 16 8 5.9292 -6.1622 0.8653 17 7 6.1803 -8.2671 0.2022 18 6 7.4478 -8.3901 0.9266 19 6 8.0149 -9.7969 0.7271 20 7 9.2861 -9.9200 1.4529 21 6 9.1296 -9.5140 2.8731 22 6 10.3403 -10.1849 3.5690 23 6 10.4550 -11.5396 2.8333 24 1 9.9559 -12.3232 3.4034 25 8 11.8275 -11.8778 2.6236 26 6 9.7450 -11.3257 1.4837 27 6 2.1830 -5.8890 -0.3358 28 6 1.4354 -4.7344 -0.2223 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4811 -0.0038 31 1 5.2840 -4.5401 -0.1949 32 1 4.0170 -7.7230 -0.9898 33 1 5.8338 -9.0210 -0.3003 34 1 8.1566 -7.6548 0.5458 35 1 7.2777 -8.2145 1.9888 36 1 7.3059 -10.5319 1.1082 37 1 8.1849 -9.9729 -0.3351 38 1 9.1817 -8.4297 2.9712 39 1 8.1926 -9.8935 3.2807 40 1 10.1396 -10.3377 4.6295 41 1 11.2450 -9.5929 3.4306 42 1 12.3256 -12.0244 3.4393 43 1 8.8902 -11.9971 1.4032 44 1 10.4413 -11.5069 0.6649 45 1 1.6893 -6.8446 -0.4317 46 1 0.3567 -4.7866 -0.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646033639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:39 Heat of formation + Delta-G solvation = -59.459038 kcal Electronic energy + Delta-G solvation = -27367.039064 eV Core-core repulsion = 23258.006992 eV Total energy + Delta-G solvation = -4109.032071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38514 -39.79062 -38.73020 -37.01852 -36.46107 -34.83115 -33.92213 -32.18508 -31.75866 -30.14749 -29.49598 -28.18686 -26.96229 -25.20777 -23.65176 -22.35341 -21.71851 -21.30446 -21.15964 -20.42913 -18.54619 -18.18901 -17.85696 -17.31215 -16.69250 -16.31512 -16.01337 -15.45364 -15.02136 -14.79978 -14.65300 -14.46516 -14.40506 -14.02054 -13.75051 -13.56242 -13.49044 -13.32546 -13.08357 -12.82534 -12.51131 -12.13963 -12.03896 -11.85297 -11.69787 -11.59690 -11.50269 -11.45039 -11.27645 -11.00685 -10.70602 -10.51342 -10.38675 -9.96589 -9.65552 -9.19717 -9.14597 -8.96011 -8.65097 -8.15323 -6.87831 -6.40582 -3.98000 2.18340 2.28739 2.60332 3.15355 3.18353 3.24011 3.34149 3.46726 3.63702 4.01470 4.07104 4.13252 4.30337 4.47021 4.53104 4.62483 4.66380 4.74514 5.01328 5.02036 5.08045 5.13847 5.25928 5.30331 5.39548 5.44610 5.52174 5.60713 5.63423 5.71834 5.79663 6.17403 6.20675 6.24561 6.29554 6.37396 6.48662 6.69976 6.78306 7.00365 7.11234 7.15230 7.22768 7.38623 7.49307 7.83762 8.04044 8.06528 8.68678 9.05617 9.75539 10.77560 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.001687 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.927698 B =16595.738742 C =17441.239278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.179 6.179 10 C 0.145 3.855 11 C -0.219 4.219 12 C -0.064 4.064 13 C 0.052 3.948 14 N -0.674 5.674 15 C 0.700 3.300 16 O -0.573 6.573 17 N -0.749 5.749 18 C 0.140 3.860 19 C 0.036 3.964 20 N -0.509 5.509 21 C 0.030 3.970 22 C -0.158 4.158 23 C 0.094 3.906 24 H 0.063 0.937 25 O -0.561 6.561 26 C 0.042 3.958 27 C -0.095 4.095 28 C -0.178 4.178 29 H 0.269 0.731 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.397 0.603 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.380 0.620 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.513 -25.131 3.387 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.091 3.909 11 C -0.239 4.239 12 C -0.084 4.084 13 C -0.041 4.041 14 N -0.322 5.322 15 C 0.401 3.599 16 O -0.450 6.450 17 N -0.406 5.406 18 C 0.015 3.985 19 C -0.093 4.093 20 N -0.234 5.234 21 C -0.098 4.098 22 C -0.197 4.197 23 C 0.034 3.966 24 H 0.081 0.919 25 O -0.366 6.366 26 C -0.086 4.086 27 C -0.116 4.116 28 C -0.198 4.198 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.231 0.769 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.227 0.773 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.706 -23.658 3.118 29.714 hybrid contribution -0.340 -0.559 0.512 0.831 sum 17.365 -24.217 3.630 30.020 Atomic orbital electron populations 1.70058 1.05921 1.27463 1.46480 1.25275 0.95843 0.98798 0.96646 0.85651 0.79241 0.80407 0.78183 1.19046 1.20185 1.20193 1.21387 0.91887 0.80828 1.52451 0.88972 1.83972 1.34256 1.11404 1.78578 1.19409 0.90281 0.88134 0.93058 1.21118 0.93541 0.98785 1.10482 1.20892 0.99967 0.90255 0.97309 1.17037 0.89461 0.84605 1.12970 1.42272 1.21654 1.18531 1.49729 1.15903 0.80762 0.83067 0.80216 1.90944 1.69148 1.37716 1.47150 1.44966 1.24711 1.14060 1.56909 1.21126 0.84202 0.96230 0.96962 1.22475 0.90080 0.96373 1.00350 1.64786 1.26891 1.19201 1.12495 1.23285 0.96974 1.01869 0.87655 1.23262 1.00026 0.96941 0.99425 1.22636 0.83029 0.95208 0.95715 0.91876 1.86549 1.21754 1.92296 1.36030 1.22841 0.98916 0.88852 0.98018 1.20318 0.91357 0.97432 1.02463 1.19966 0.99414 0.89830 1.10577 0.92155 0.85225 0.85543 0.76889 0.77304 0.90536 0.91475 0.93835 0.89627 0.88934 0.93111 0.90559 0.89408 0.77291 0.92580 0.88747 0.86836 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.09 9.48 30.88 0.29 -10.80 16 8 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 9 O -0.18 -5.17 9.76 0.00 0.00 -5.17 16 10 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 11 C -0.22 -5.07 9.16 -39.42 -0.36 -5.43 16 12 C -0.06 -1.33 8.69 -39.42 -0.34 -1.67 16 13 C 0.05 0.94 6.30 -83.61 -0.53 0.42 16 14 N -0.67 -9.31 5.35 -14.18 -0.08 -9.39 16 15 C 0.70 10.27 8.41 -86.92 -0.73 9.54 16 16 O -0.57 -11.06 13.78 5.29 0.07 -10.99 16 17 N -0.75 -7.35 5.56 -65.22 -0.36 -7.71 16 18 C 0.14 1.31 5.33 -4.04 -0.02 1.28 16 19 C 0.04 0.24 5.14 -3.83 -0.02 0.22 16 20 N -0.51 -3.87 5.40 -230.46 -1.24 -5.11 16 21 C 0.03 0.20 5.10 -1.90 -0.01 0.20 16 22 C -0.16 -0.89 6.81 -24.88 -0.17 -1.06 16 23 C 0.09 0.54 4.35 -25.38 -0.11 0.43 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 O -0.56 -3.61 13.25 -35.23 -0.47 -4.08 16 26 C 0.04 0.28 6.51 -2.76 -0.02 0.26 16 27 C -0.10 -1.68 9.96 -39.41 -0.39 -2.07 16 28 C -0.18 -3.74 9.99 -39.42 -0.39 -4.14 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.13 3.02 5.63 -52.48 -0.30 2.73 16 31 H 0.13 2.64 6.22 -52.49 -0.33 2.32 16 32 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 33 H 0.39 2.50 8.49 -40.82 -0.35 2.15 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.70 6.79 -51.93 -0.35 0.34 16 36 H 0.04 0.25 7.81 -51.93 -0.41 -0.16 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.05 0.33 8.00 -51.93 -0.42 -0.09 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.38 0.84 9.12 45.56 0.42 1.26 16 43 H 0.06 0.30 7.57 -51.93 -0.39 -0.09 16 44 H 0.09 0.72 7.96 -51.93 -0.41 0.31 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -36.04 379.38 -9.44 -45.47 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.66 Total: 8.67 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.16 Total: -8.53 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.92 Total: -47.04 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.39 Total: -20.24 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.04 -9.44 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646033639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.985 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds