Wall clock time and date at job start Tue Mar 31 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47314 * 299.99642 * 3 2 1 6 6 H 1.48500 * 109.47276 * 59.99972 * 3 2 1 7 7 C 1.38632 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.35779 * 116.99994 * 174.96504 * 9 7 2 11 11 C 1.38906 * 120.00297 * 5.33777 * 10 9 7 12 12 C 1.38006 * 120.00483 * 180.02562 * 11 10 9 13 13 C 1.38909 * 119.99670 * 359.97438 * 12 11 10 14 14 N 1.40030 * 120.00110 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99778 * 35.12630 * 14 13 12 16 16 O 1.21591 * 120.00128 * 355.50202 * 15 14 13 17 17 N 1.34770 * 119.99707 * 175.49794 * 15 14 13 18 18 C 1.46506 * 120.00082 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47368 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.48536 * 110.99871 * 52.60512 * 20 19 18 22 22 C 1.54927 * 103.22707 * 159.72362 * 21 20 19 23 23 C 1.54591 * 102.92338 * 322.58250 * 22 21 20 24 24 H 1.09007 * 110.31097 * 263.04297 * 23 22 21 25 25 O 1.42899 * 110.39778 * 140.92128 * 23 22 21 26 26 C 1.47900 * 111.00305 * 169.99529 * 20 19 18 27 27 C 1.38910 * 120.00115 * 0.25448 * 13 12 11 28 28 C 1.38014 * 119.99514 * 359.47341 * 27 13 12 29 29 H 0.97002 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99591 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.99800 * 180.02562 * 12 11 10 32 32 H 0.96991 * 120.00226 * 215.40983 * 14 13 12 33 33 H 0.96997 * 120.00381 * 359.97438 * 17 15 14 34 34 H 1.09002 * 109.46787 * 300.00033 * 18 17 15 35 35 H 1.08998 * 109.47207 * 59.99471 * 18 17 15 36 36 H 1.09002 * 109.47201 * 299.99789 * 19 18 17 37 37 H 1.08998 * 109.47381 * 59.99586 * 19 18 17 38 38 H 1.09001 * 110.66347 * 278.15660 * 21 20 19 39 39 H 1.08998 * 110.67033 * 41.28331 * 21 20 19 40 40 H 1.09002 * 110.72240 * 204.22680 * 22 21 20 41 41 H 1.08997 * 110.88028 * 81.01602 * 22 21 20 42 42 H 0.96696 * 114.00233 * 64.23176 * 25 23 22 43 43 H 1.08998 * 109.91611 * 333.51513 * 26 20 19 44 44 H 1.09004 * 109.91155 * 94.79920 * 26 20 19 45 45 H 1.07991 * 120.00352 * 179.74438 * 27 13 12 46 46 H 1.07997 * 119.99934 * 180.27394 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1051 11 6 3.4578 -3.4374 -0.0951 12 6 4.2054 -4.5924 -0.2030 13 6 3.5704 -5.8222 -0.3211 14 7 4.3289 -6.9941 -0.4311 15 6 5.4952 -7.1070 0.2349 16 8 5.9292 -6.1622 0.8653 17 7 6.1803 -8.2671 0.2022 18 6 7.4478 -8.3901 0.9266 19 6 8.0149 -9.7969 0.7271 20 7 9.2861 -9.9200 1.4529 21 6 9.1296 -9.5140 2.8731 22 6 10.3403 -10.1849 3.5690 23 6 10.4550 -11.5396 2.8333 24 1 9.9559 -12.3232 3.4034 25 8 11.8275 -11.8778 2.6236 26 6 9.7450 -11.3257 1.4837 27 6 2.1830 -5.8890 -0.3358 28 6 1.4354 -4.7344 -0.2223 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4811 -0.0038 31 1 5.2840 -4.5401 -0.1949 32 1 4.0170 -7.7230 -0.9898 33 1 5.8338 -9.0210 -0.3003 34 1 8.1566 -7.6548 0.5458 35 1 7.2777 -8.2145 1.9888 36 1 7.3059 -10.5319 1.1082 37 1 8.1849 -9.9729 -0.3351 38 1 9.1817 -8.4297 2.9712 39 1 8.1926 -9.8935 3.2807 40 1 10.1396 -10.3377 4.6295 41 1 11.2450 -9.5929 3.4306 42 1 12.3256 -12.0244 3.4393 43 1 8.8902 -11.9971 1.4032 44 1 10.4413 -11.5069 0.6649 45 1 1.6893 -6.8446 -0.4317 46 1 0.3567 -4.7866 -0.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646033639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:38 Heat of formation + Delta-G solvation = -90.461896 kcal Electronic energy + Delta-G solvation = -27368.383449 eV Core-core repulsion = 23258.006992 eV Total energy + Delta-G solvation = -4110.376456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64059 -40.56062 -40.22922 -38.37654 -37.31110 -35.77822 -35.38331 -34.15181 -32.45173 -31.82692 -30.19177 -29.39358 -27.94237 -27.14901 -24.43234 -23.86225 -23.13059 -21.98644 -21.78722 -21.61441 -20.07406 -19.44977 -18.90090 -18.60693 -18.12312 -17.11451 -16.93979 -16.37381 -16.30724 -16.10364 -15.72397 -15.67277 -15.44789 -15.23884 -15.16368 -14.99570 -14.62667 -14.34154 -14.20265 -13.92382 -13.64966 -13.55819 -13.25533 -13.19035 -12.73372 -12.60623 -12.52820 -12.41976 -12.37950 -12.18835 -12.11188 -11.70493 -11.48298 -11.32373 -10.94892 -10.92316 -10.55245 -10.14278 -9.81524 -9.47206 -8.56718 -8.46102 -6.12590 0.54616 0.60844 1.35358 1.42235 1.53127 1.54761 2.08779 2.18564 2.83684 2.84911 3.16793 3.25393 3.35723 3.53965 3.62855 3.67200 3.87783 4.03385 4.11709 4.15140 4.17865 4.26616 4.43354 4.50376 4.57890 4.59942 4.68315 4.72729 4.81994 4.85708 4.89026 4.93985 4.95560 5.08696 5.14287 5.15400 5.33619 5.39388 5.44628 5.63480 5.72665 5.79005 5.93794 6.00190 6.04523 6.21212 6.88075 6.98824 7.05004 7.53347 7.78609 8.76768 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.001687 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.927698 B =16595.738742 C =17441.239278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.096 0.904 9 O -0.228 6.228 10 C 0.105 3.895 11 C -0.229 4.229 12 C -0.077 4.077 13 C 0.081 3.919 14 N -0.660 5.660 15 C 0.697 3.303 16 O -0.622 6.622 17 N -0.723 5.723 18 C 0.143 3.857 19 C 0.046 3.954 20 N -0.528 5.528 21 C 0.027 3.973 22 C -0.154 4.154 23 C 0.094 3.906 24 H 0.083 0.917 25 O -0.581 6.581 26 C 0.039 3.961 27 C -0.077 4.077 28 C -0.178 4.178 29 H 0.273 0.727 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.424 0.576 33 H 0.416 0.584 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.396 0.604 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.168 0.832 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.577 -28.521 3.211 34.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.248 4.248 12 C -0.098 4.098 13 C -0.014 4.014 14 N -0.310 5.310 15 C 0.397 3.603 16 O -0.502 6.502 17 N -0.381 5.381 18 C 0.018 3.982 19 C -0.082 4.082 20 N -0.253 5.253 21 C -0.100 4.100 22 C -0.192 4.192 23 C 0.035 3.965 24 H 0.100 0.900 25 O -0.389 6.389 26 C -0.088 4.088 27 C -0.097 4.097 28 C -0.198 4.198 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.262 0.738 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.246 0.754 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.186 0.814 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.811 -27.189 2.915 33.190 hybrid contribution -0.489 0.106 0.561 0.752 sum 18.322 -27.083 3.476 32.882 Atomic orbital electron populations 1.70182 1.07789 1.28669 1.48934 1.26505 0.96872 1.02481 0.95934 0.84567 0.78044 0.75122 0.78714 1.18066 1.19029 1.19221 1.21797 0.92361 0.81637 1.53109 0.88649 1.83933 1.35564 1.12401 1.81593 1.19938 0.91031 0.88441 0.95182 1.21087 0.93350 0.99226 1.11183 1.20942 0.99784 0.90846 0.98195 1.17143 0.90185 0.85109 1.08918 1.42038 1.21087 1.17816 1.50066 1.16107 0.80793 0.83622 0.79780 1.90934 1.70276 1.39830 1.49127 1.44705 1.24097 1.13169 1.56114 1.21108 0.83369 0.97629 0.96077 1.22385 0.90162 0.94640 1.01020 1.64738 1.27449 1.20206 1.12952 1.23278 0.97919 1.01132 0.87685 1.23233 0.98871 0.96712 1.00372 1.22692 0.82894 0.95592 0.95347 0.89957 1.86506 1.22369 1.92336 1.37738 1.22872 0.99358 0.88453 0.98142 1.20746 0.90839 0.98369 0.99755 1.20318 1.00346 0.89555 1.09590 0.91818 0.86785 0.85837 0.73775 0.74675 0.92661 0.92483 0.91907 0.88642 0.90461 0.92357 0.88845 0.90685 0.75384 0.90911 0.90132 0.81410 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.83 13.67 21.61 0.30 -56.54 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.41 -24.83 9.48 67.91 0.64 -24.19 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -13.98 9.76 -22.92 -0.22 -14.20 16 10 C 0.10 5.35 6.65 22.59 0.15 5.50 16 11 C -0.23 -10.96 9.16 22.37 0.20 -10.75 16 12 C -0.08 -3.20 8.69 22.38 0.19 -3.00 16 13 C 0.08 2.71 6.30 38.15 0.24 2.95 16 14 N -0.66 -15.69 5.35 -317.04 -1.69 -17.39 16 15 C 0.70 18.65 8.41 179.05 1.51 20.15 16 16 O -0.62 -23.47 13.78 -4.00 -0.06 -23.53 16 17 N -0.72 -11.89 5.56 -478.53 -2.66 -14.55 16 18 C 0.14 2.42 5.33 86.38 0.46 2.88 16 19 C 0.05 0.50 5.14 86.30 0.44 0.94 16 20 N -0.53 -7.13 5.40 -883.05 -4.77 -11.90 16 21 C 0.03 0.34 5.10 86.65 0.44 0.78 16 22 C -0.15 -1.49 6.81 31.79 0.22 -1.27 16 23 C 0.09 0.88 4.35 31.47 0.14 1.02 16 24 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 25 O -0.58 -6.59 13.25 -148.98 -1.97 -8.56 16 26 C 0.04 0.44 6.51 86.44 0.56 1.00 16 27 C -0.08 -2.44 9.96 22.38 0.22 -2.22 16 28 C -0.18 -7.37 9.99 22.38 0.22 -7.14 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.11 5.68 5.63 -2.91 -0.02 5.67 16 31 H 0.12 5.21 6.22 -2.91 -0.02 5.19 16 32 H 0.42 5.90 8.84 -92.72 -0.82 5.08 16 33 H 0.42 3.37 8.49 -92.71 -0.79 2.58 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.12 6.79 -2.39 -0.02 1.10 16 36 H 0.06 0.46 7.81 -2.39 -0.02 0.44 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 39 H 0.06 0.63 8.00 -2.39 -0.02 0.61 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 42 H 0.40 1.13 9.12 -74.06 -0.68 0.45 16 43 H 0.07 0.55 7.57 -2.39 -0.02 0.53 16 44 H 0.08 1.12 7.96 -2.38 -0.02 1.10 16 45 H 0.17 3.58 8.06 -2.92 -0.02 3.55 16 46 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -84.37 379.38 -4.17 -88.54 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -1.23 Total: 25.82 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 6.11 Total: -14.07 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -8.83 Total: -100.37 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -2.25 Total: -46.29 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.37 -4.17 -88.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646033639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.922 kcal (2) G-P(sol) polarization free energy of solvation -84.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds