Wall clock time and date at job start Tue Mar 31 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47230 * 273.54565 * 3 2 1 5 5 H 1.48495 * 109.46814 * 33.54596 * 3 2 1 6 6 H 1.48499 * 109.46715 * 153.54186 * 3 2 1 7 7 C 1.37877 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00474 * 353.93205 * 7 2 1 9 9 C 1.50702 * 119.99649 * 174.20920 * 7 2 1 10 10 C 1.52997 * 115.55077 * 294.54713 * 9 7 2 11 11 O 1.45203 * 109.47154 * 294.97046 * 10 9 7 12 12 C 1.34227 * 117.00106 * 183.86622 * 11 10 9 13 13 O 1.20831 * 120.00298 * 5.14862 * 12 11 10 14 14 C 1.50705 * 120.00112 * 185.15197 * 12 11 10 15 15 N 1.46498 * 109.47106 * 185.37042 * 14 12 11 16 16 N 1.40439 * 126.30776 * 269.69177 * 15 14 12 17 17 C 1.28448 * 108.09243 * 179.82110 * 16 15 14 18 18 N 1.38438 * 108.79508 * 0.46863 * 17 16 15 19 19 C 1.33798 * 108.43544 * 359.66347 * 18 17 16 20 20 O 1.21819 * 126.36213 * 180.02562 * 19 18 17 21 21 C 1.47219 * 122.75401 * 179.60415 * 18 17 16 22 22 C 1.53123 * 107.84423 * 67.40487 * 21 18 17 23 23 C 1.51022 * 111.77640 * 276.79291 * 22 21 18 24 24 C 1.51076 * 115.14821 * 70.79832 * 23 22 21 25 25 C 1.51504 * 128.60901 * 180.18407 * 17 16 15 26 26 C 1.53003 * 117.50004 * 148.87803 * 9 7 2 27 27 C 1.52998 * 117.49741 * 80.21684 * 9 7 2 28 28 H 0.97001 * 120.00259 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47382 * 54.97139 * 10 9 7 30 30 H 1.09000 * 109.47371 * 174.97091 * 10 9 7 31 31 H 1.08999 * 109.46991 * 305.37388 * 14 12 11 32 32 H 1.08999 * 109.47039 * 65.37261 * 14 12 11 33 33 H 1.08994 * 109.78814 * 186.99833 * 21 18 17 34 34 H 1.08992 * 109.78981 * 307.83388 * 21 18 17 35 35 H 1.08998 * 109.02269 * 156.19792 * 22 21 18 36 36 H 1.09002 * 108.95503 * 37.33578 * 22 21 18 37 37 H 1.09000 * 108.34313 * 309.32561 * 23 22 21 38 38 H 1.08991 * 108.20509 * 192.16279 * 23 22 21 39 39 H 1.08994 * 109.06125 * 169.07272 * 24 23 22 40 40 H 1.08996 * 109.06242 * 50.13245 * 24 23 22 41 41 H 1.09002 * 109.81574 * 232.89762 * 25 17 16 42 42 H 1.09004 * 109.81005 * 353.73964 * 25 17 16 43 43 H 1.09004 * 117.49599 * 359.97438 * 26 9 7 44 44 H 1.09000 * 117.50032 * 145.02148 * 26 9 7 45 45 H 1.09008 * 117.49881 * 214.97640 * 27 9 7 46 46 H 1.08999 * 117.50312 * 359.97336 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4216 2.0898 -1.3974 5 1 1.4860 2.6298 0.7737 6 1 3.5821 1.4197 0.6238 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 0.0979 9 6 3.5057 -1.1973 -0.1322 10 6 4.0521 -0.6887 -1.4678 11 8 3.6430 -1.5879 -2.5320 12 6 4.1092 -1.3267 -3.7633 13 8 4.9079 -0.4356 -3.9306 14 6 3.6364 -2.1449 -4.9373 15 7 4.3807 -1.7534 -6.1368 16 7 4.0167 -0.7517 -7.0514 17 6 4.9176 -0.6996 -7.9654 18 7 5.8827 -1.6547 -7.6954 19 6 5.5422 -2.2940 -6.5705 20 8 6.1628 -3.1959 -6.0362 21 6 7.0572 -1.8661 -8.5575 22 6 7.9460 -0.6236 -8.4527 23 6 7.4824 0.4765 -9.3777 24 6 6.1885 1.1472 -8.9797 25 6 4.9885 0.2139 -9.1720 26 6 4.2734 -2.3241 0.5620 27 6 4.3258 -0.9016 1.1251 28 1 -0.4850 0.8400 -0.0004 29 1 3.6601 0.3092 -1.6644 30 1 5.1405 -0.6493 -1.4238 31 1 3.8045 -3.2025 -4.7343 32 1 2.5723 -1.9702 -5.0969 33 1 7.6088 -2.7438 -8.2209 34 1 6.7369 -2.0043 -9.5901 35 1 8.9695 -0.8962 -8.7099 36 1 7.9233 -0.2576 -7.4262 37 1 7.3581 0.0560 -10.3756 38 1 8.2630 1.2358 -9.4218 39 1 6.0474 2.0390 -9.5902 40 1 6.2472 1.4403 -7.9315 41 1 5.1227 -0.3788 -10.0769 42 1 4.0721 0.7994 -9.2465 43 1 3.6926 -3.0628 1.1144 44 1 5.1679 -2.7027 0.0675 45 1 5.2548 -0.3451 1.0008 46 1 3.7795 -0.7043 2.0475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647269992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:13 Heat of formation + Delta-G solvation = -13.608105 kcal Electronic energy + Delta-G solvation = -29519.205897 eV Core-core repulsion = 25412.162071 eV Total energy + Delta-G solvation = -4107.043826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70128 -39.94307 -38.06094 -37.22408 -37.02129 -35.46606 -34.37964 -33.26578 -32.14458 -30.47229 -29.10767 -27.50864 -26.20346 -25.08581 -24.33742 -22.33844 -21.62222 -20.89848 -20.73377 -20.45480 -19.17442 -17.87868 -17.51209 -16.94464 -16.38148 -16.18810 -16.08788 -15.80036 -15.43498 -15.17624 -14.80454 -14.71698 -14.51987 -13.89217 -13.75111 -13.38202 -13.22721 -13.04706 -12.76649 -12.54479 -12.28795 -12.24927 -12.12050 -11.98054 -11.79333 -11.41735 -11.22008 -11.18769 -11.08113 -10.91883 -10.63178 -10.52800 -10.31943 -10.27659 -10.00638 -9.91362 -9.52933 -9.07444 -8.69437 -8.66640 -8.49032 -6.13173 -4.13607 1.49648 1.82212 2.52469 2.57149 2.77935 3.23666 3.27586 3.36254 3.40914 4.02289 4.16383 4.22637 4.30543 4.38636 4.50261 4.73458 4.77223 4.83814 4.87377 4.98336 5.10210 5.15618 5.18692 5.20865 5.26685 5.33792 5.48080 5.59175 5.60928 5.63994 5.68190 5.76833 5.84361 5.87104 5.94934 6.00594 6.13454 6.30836 6.39082 6.46919 6.65528 6.84037 7.06776 7.11418 7.53285 7.68810 7.95344 8.18351 8.48481 8.90849 9.49319 10.98597 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002941 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.245034 B = 9519.338046 C = 9986.953727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.478 4.478 8 H 0.081 0.919 9 C -0.009 4.009 10 C 0.109 3.891 11 O -0.323 6.323 12 C 0.439 3.561 13 O -0.512 6.512 14 C 0.171 3.829 15 N -0.443 5.443 16 N -0.261 5.261 17 C 0.274 3.726 18 N -0.559 5.559 19 C 0.660 3.340 20 O -0.554 6.554 21 C 0.132 3.868 22 C -0.141 4.141 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.037 4.037 26 C -0.175 4.175 27 C -0.181 4.181 28 H 0.265 0.735 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 -0.099 -22.896 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.686 3.314 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.515 4.515 8 H 0.099 0.901 9 C -0.010 4.010 10 C 0.035 3.965 11 O -0.237 6.237 12 C 0.279 3.721 13 O -0.401 6.401 14 C 0.048 3.952 15 N -0.263 5.263 16 N -0.080 5.080 17 C -0.005 4.005 18 N -0.289 5.289 19 C 0.360 3.640 20 O -0.427 6.427 21 C 0.011 3.989 22 C -0.180 4.180 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.077 4.077 26 C -0.212 4.212 27 C -0.219 4.219 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.882 -0.041 -22.047 25.534 hybrid contribution 1.109 0.893 -0.024 1.424 sum 13.991 0.852 -22.071 26.146 Atomic orbital electron populations 1.69885 1.06210 1.27087 1.49813 1.24910 0.94561 0.98792 0.94012 0.87147 0.81713 0.84092 0.78462 1.20552 1.21356 1.17293 1.20233 0.86365 0.94751 1.50161 0.90084 1.19332 0.95235 0.99836 0.86573 1.22990 0.96934 0.91515 0.85039 1.86559 1.67473 1.53776 1.15928 1.23895 0.79318 0.83261 0.85582 1.90631 1.32335 1.31342 1.85785 1.20770 0.97637 0.99620 0.77193 1.48484 1.22331 1.32953 1.22582 1.76664 1.21919 1.09087 1.00371 1.24518 0.85866 0.92388 0.97722 1.46322 1.24188 1.33790 1.24591 1.16349 0.82372 0.83741 0.81586 1.91087 1.57671 1.31590 1.62380 1.21945 0.83772 0.99773 0.93459 1.21675 0.99560 0.94963 1.01773 1.20881 0.97531 0.98106 0.99366 1.21281 0.92982 0.98224 1.03484 1.20574 1.01459 0.95003 0.90621 1.22800 1.01517 0.91789 1.05083 1.23085 1.00916 0.98466 0.99422 0.92487 0.92108 0.93163 0.84498 0.84112 0.88143 0.89129 0.89687 0.90914 0.91583 0.91243 0.89874 0.91071 0.88437 0.87514 0.89220 0.90785 0.91122 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.86 21.53 24.98 -169.99 -4.25 17.29 16 4 H -0.28 -7.09 7.03 56.52 0.40 -6.69 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.85 5.72 56.52 0.32 -5.53 16 7 C -0.48 -13.38 9.33 -34.44 -0.32 -13.70 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C -0.01 -0.21 1.06 -155.66 -0.17 -0.37 16 10 C 0.11 2.53 5.00 37.16 0.19 2.72 16 11 O -0.32 -7.18 10.15 -39.25 -0.40 -7.58 16 12 C 0.44 8.86 8.01 36.01 0.29 9.15 16 13 O -0.51 -11.64 16.11 -18.75 -0.30 -11.95 16 14 C 0.17 2.67 6.98 -5.19 -0.04 2.64 16 15 N -0.44 -7.19 3.13 -66.49 -0.21 -7.40 16 16 N -0.26 -3.82 12.50 33.25 0.42 -3.40 16 17 C 0.27 3.07 7.10 -153.49 -1.09 1.98 16 18 N -0.56 -6.71 2.76 -117.21 -0.32 -7.04 16 19 C 0.66 10.79 8.68 -87.35 -0.76 10.04 16 20 O -0.55 -10.58 17.75 5.08 0.09 -10.49 16 21 C 0.13 1.00 6.32 -3.59 -0.02 0.98 16 22 C -0.14 -0.92 5.63 -27.66 -0.16 -1.07 16 23 C -0.12 -0.56 5.19 -28.69 -0.15 -0.71 16 24 C -0.12 -0.68 5.57 -27.58 -0.15 -0.84 16 25 C -0.04 -0.22 5.81 -27.37 -0.16 -0.38 16 26 C -0.17 -3.63 9.96 -26.69 -0.27 -3.90 16 27 C -0.18 -3.86 8.02 -26.69 -0.21 -4.07 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.06 1.50 5.07 -51.93 -0.26 1.24 16 30 H 0.05 1.10 7.95 -51.93 -0.41 0.68 16 31 H 0.14 1.85 8.11 -51.93 -0.42 1.43 16 32 H 0.14 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.10 0.81 8.00 -51.93 -0.42 0.40 16 34 H 0.09 0.41 7.67 -51.93 -0.40 0.01 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.07 0.19 7.80 -51.93 -0.41 -0.22 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 41 H 0.10 0.34 7.70 -51.93 -0.40 -0.06 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 46 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -37.41 377.21 -8.62 -46.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.99 Total: 0.43 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -3.11 Total: 4.66 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.66 Total: -44.07 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.61 Total: -30.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.25 Total: 17.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.41 -8.62 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647269992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.424 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds