Wall clock time and date at job start Tue Mar 31 2020 18:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47230 * 273.54565 * 3 2 1 5 5 H 1.48495 * 109.46814 * 33.54596 * 3 2 1 6 6 H 1.48499 * 109.46715 * 153.54186 * 3 2 1 7 7 C 1.37877 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00474 * 353.93205 * 7 2 1 9 9 C 1.50702 * 119.99649 * 174.20920 * 7 2 1 10 10 C 1.52997 * 115.55077 * 294.54713 * 9 7 2 11 11 O 1.45203 * 109.47154 * 294.97046 * 10 9 7 12 12 C 1.34227 * 117.00106 * 183.86622 * 11 10 9 13 13 O 1.20831 * 120.00298 * 5.14862 * 12 11 10 14 14 C 1.50705 * 120.00112 * 185.15197 * 12 11 10 15 15 N 1.46498 * 109.47106 * 185.37042 * 14 12 11 16 16 N 1.40439 * 126.30776 * 269.69177 * 15 14 12 17 17 C 1.28448 * 108.09243 * 179.82110 * 16 15 14 18 18 N 1.38438 * 108.79508 * 0.46863 * 17 16 15 19 19 C 1.33798 * 108.43544 * 359.66347 * 18 17 16 20 20 O 1.21819 * 126.36213 * 180.02562 * 19 18 17 21 21 C 1.47219 * 122.75401 * 179.60415 * 18 17 16 22 22 C 1.53123 * 107.84423 * 67.40487 * 21 18 17 23 23 C 1.51022 * 111.77640 * 276.79291 * 22 21 18 24 24 C 1.51076 * 115.14821 * 70.79832 * 23 22 21 25 25 C 1.51504 * 128.60901 * 180.18407 * 17 16 15 26 26 C 1.53003 * 117.50004 * 148.87803 * 9 7 2 27 27 C 1.52998 * 117.49741 * 80.21684 * 9 7 2 28 28 H 0.97001 * 120.00259 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47382 * 54.97139 * 10 9 7 30 30 H 1.09000 * 109.47371 * 174.97091 * 10 9 7 31 31 H 1.08999 * 109.46991 * 305.37388 * 14 12 11 32 32 H 1.08999 * 109.47039 * 65.37261 * 14 12 11 33 33 H 1.08994 * 109.78814 * 186.99833 * 21 18 17 34 34 H 1.08992 * 109.78981 * 307.83388 * 21 18 17 35 35 H 1.08998 * 109.02269 * 156.19792 * 22 21 18 36 36 H 1.09002 * 108.95503 * 37.33578 * 22 21 18 37 37 H 1.09000 * 108.34313 * 309.32561 * 23 22 21 38 38 H 1.08991 * 108.20509 * 192.16279 * 23 22 21 39 39 H 1.08994 * 109.06125 * 169.07272 * 24 23 22 40 40 H 1.08996 * 109.06242 * 50.13245 * 24 23 22 41 41 H 1.09002 * 109.81574 * 232.89762 * 25 17 16 42 42 H 1.09004 * 109.81005 * 353.73964 * 25 17 16 43 43 H 1.09004 * 117.49599 * 359.97438 * 26 9 7 44 44 H 1.09000 * 117.50032 * 145.02148 * 26 9 7 45 45 H 1.09008 * 117.49881 * 214.97640 * 27 9 7 46 46 H 1.08999 * 117.50312 * 359.97336 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4216 2.0898 -1.3974 5 1 1.4860 2.6298 0.7737 6 1 3.5821 1.4197 0.6238 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 0.0979 9 6 3.5057 -1.1973 -0.1322 10 6 4.0521 -0.6887 -1.4678 11 8 3.6430 -1.5879 -2.5320 12 6 4.1092 -1.3267 -3.7633 13 8 4.9079 -0.4356 -3.9306 14 6 3.6364 -2.1449 -4.9373 15 7 4.3807 -1.7534 -6.1368 16 7 4.0167 -0.7517 -7.0514 17 6 4.9176 -0.6996 -7.9654 18 7 5.8827 -1.6547 -7.6954 19 6 5.5422 -2.2940 -6.5705 20 8 6.1628 -3.1959 -6.0362 21 6 7.0572 -1.8661 -8.5575 22 6 7.9460 -0.6236 -8.4527 23 6 7.4824 0.4765 -9.3777 24 6 6.1885 1.1472 -8.9797 25 6 4.9885 0.2139 -9.1720 26 6 4.2734 -2.3241 0.5620 27 6 4.3258 -0.9016 1.1251 28 1 -0.4850 0.8400 -0.0004 29 1 3.6601 0.3092 -1.6644 30 1 5.1405 -0.6493 -1.4238 31 1 3.8045 -3.2025 -4.7343 32 1 2.5723 -1.9702 -5.0969 33 1 7.6088 -2.7438 -8.2209 34 1 6.7369 -2.0043 -9.5901 35 1 8.9695 -0.8962 -8.7099 36 1 7.9233 -0.2576 -7.4262 37 1 7.3581 0.0560 -10.3756 38 1 8.2630 1.2358 -9.4218 39 1 6.0474 2.0390 -9.5902 40 1 6.2472 1.4403 -7.9315 41 1 5.1227 -0.3788 -10.0769 42 1 4.0721 0.7994 -9.2465 43 1 3.6926 -3.0628 1.1144 44 1 5.1679 -2.7027 0.0675 45 1 5.2548 -0.3451 1.0008 46 1 3.7795 -0.7043 2.0475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647269992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:12 Heat of formation + Delta-G solvation = -37.306314 kcal Electronic energy + Delta-G solvation = -29520.233528 eV Core-core repulsion = 25412.162071 eV Total energy + Delta-G solvation = -4108.071457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.73198 -41.59644 -39.08757 -38.81341 -38.10182 -37.17125 -35.26530 -34.32287 -34.14073 -31.38108 -30.15940 -29.04093 -27.60200 -26.77714 -25.03942 -23.55881 -23.22642 -22.04562 -21.51851 -21.34862 -21.11493 -19.19764 -18.86540 -18.60905 -17.84630 -17.75845 -17.19006 -16.94548 -16.82236 -16.55039 -15.99923 -15.62791 -15.50486 -15.06252 -15.02215 -14.72435 -14.48977 -14.30663 -13.98047 -13.87257 -13.79074 -13.48953 -13.15697 -13.06326 -13.02976 -12.89997 -12.45518 -12.36064 -12.21672 -12.14417 -11.85095 -11.77493 -11.64200 -11.63590 -11.50263 -11.43762 -11.04739 -10.94560 -10.68036 -10.45371 -9.81581 -8.34187 -6.38142 0.40515 0.87702 0.93736 1.25230 1.30980 1.36064 1.41796 1.69137 2.00332 2.29086 2.91846 3.16231 3.18769 3.47503 3.56809 3.75708 3.76981 3.86467 3.89672 4.02476 4.04879 4.07053 4.17896 4.30485 4.32198 4.34845 4.39064 4.50767 4.54615 4.72941 4.76486 4.82377 4.82883 4.90358 4.97523 5.04427 5.12893 5.14074 5.22570 5.26258 5.38074 5.41464 5.43826 5.55829 5.62016 6.26500 6.49021 6.52123 6.67115 6.80381 7.27849 8.81272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002941 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.245034 B = 9519.338046 C = 9986.953727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.030 3.970 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.221 1.221 7 C -0.477 4.477 8 H 0.040 0.960 9 C -0.042 4.042 10 C 0.112 3.888 11 O -0.336 6.336 12 C 0.436 3.564 13 O -0.541 6.541 14 C 0.174 3.826 15 N -0.454 5.454 16 N -0.303 5.303 17 C 0.290 3.710 18 N -0.554 5.554 19 C 0.644 3.356 20 O -0.593 6.593 21 C 0.122 3.878 22 C -0.137 4.137 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.035 4.035 26 C -0.157 4.157 27 C -0.167 4.167 28 H 0.267 0.733 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.031 0.969 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.033 0.967 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.507 0.769 -25.555 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.169 4.169 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.143 1.143 7 C -0.514 4.514 8 H 0.059 0.941 9 C -0.043 4.043 10 C 0.038 3.962 11 O -0.251 6.251 12 C 0.279 3.721 13 O -0.432 6.432 14 C 0.050 3.950 15 N -0.273 5.273 16 N -0.124 5.124 17 C 0.012 3.988 18 N -0.282 5.282 19 C 0.343 3.657 20 O -0.470 6.470 21 C 0.002 3.998 22 C -0.175 4.175 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.074 4.074 26 C -0.194 4.194 27 C -0.204 4.204 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.052 0.948 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.152 0.832 -24.735 29.019 hybrid contribution 0.442 0.563 0.707 1.006 sum 15.594 1.395 -24.028 28.679 Atomic orbital electron populations 1.70012 1.07921 1.28004 1.51967 1.25631 0.95153 1.02167 0.93924 0.86272 0.81834 0.79946 0.78127 1.21403 1.21015 1.14326 1.20350 0.88844 0.93116 1.49137 0.94132 1.19239 0.93189 1.03757 0.88123 1.22828 0.97591 0.90751 0.85023 1.86575 1.67931 1.53787 1.16768 1.24807 0.78434 0.83130 0.85698 1.90601 1.33721 1.32838 1.86016 1.20963 0.98651 0.99667 0.75673 1.48607 1.22487 1.33501 1.22737 1.76679 1.24068 1.10025 1.01592 1.25637 0.84064 0.91329 0.97751 1.46611 1.25113 1.32914 1.23548 1.16678 0.82412 0.83909 0.82710 1.91031 1.58776 1.33405 1.63837 1.22428 0.82635 1.00018 0.94688 1.21676 1.00708 0.95099 1.00007 1.20899 0.97005 0.97594 1.00220 1.21306 0.93436 0.99263 1.01715 1.20997 1.02254 0.94655 0.89524 1.22864 1.01400 0.91485 1.03660 1.23146 1.00946 0.98898 0.97438 0.92402 0.93944 0.91581 0.82641 0.81845 0.89118 0.84804 0.87576 0.95002 0.88193 0.90489 0.87199 0.94821 0.84439 0.86409 0.89268 0.88427 0.88450 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 2 C 0.03 1.74 5.47 84.65 0.46 2.20 16 3 Si 0.91 44.74 24.98 68.60 1.71 46.45 16 4 H -0.29 -14.36 7.03 99.48 0.70 -13.66 16 5 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.22 -9.69 5.72 99.48 0.57 -9.12 16 7 C -0.48 -27.35 9.33 25.60 0.24 -27.11 16 8 H 0.04 2.58 8.06 -2.92 -0.02 2.55 16 9 C -0.04 -1.99 1.06 -52.93 -0.06 -2.05 16 10 C 0.11 5.16 5.00 71.98 0.36 5.52 16 11 O -0.34 -15.14 10.15 -51.39 -0.52 -15.66 16 12 C 0.44 17.97 8.01 71.24 0.57 18.54 16 13 O -0.54 -25.14 16.11 21.95 0.35 -24.79 16 14 C 0.17 5.52 6.98 85.63 0.60 6.12 16 15 N -0.45 -14.93 3.13 -482.17 -1.51 -16.44 16 16 N -0.30 -8.84 12.50 -48.73 -0.61 -9.45 16 17 C 0.29 6.11 7.10 137.85 0.98 7.09 16 18 N -0.55 -12.83 2.76 -643.44 -1.77 -14.60 16 19 C 0.64 21.39 8.68 179.21 1.56 22.94 16 20 O -0.59 -23.36 17.75 -4.73 -0.08 -23.44 16 21 C 0.12 1.58 6.32 86.28 0.55 2.13 16 22 C -0.14 -1.49 5.63 29.99 0.17 -1.33 16 23 C -0.12 -0.66 5.19 29.32 0.15 -0.50 16 24 C -0.12 -0.99 5.57 30.05 0.17 -0.82 16 25 C -0.03 -0.30 5.81 30.18 0.18 -0.13 16 26 C -0.16 -6.25 9.96 30.62 0.30 -5.94 16 27 C -0.17 -6.68 8.02 30.62 0.25 -6.44 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.04 2.09 5.07 -2.38 -0.01 2.08 16 30 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 31 H 0.16 4.27 8.11 -2.39 -0.02 4.25 16 32 H 0.16 4.34 8.14 -2.39 -0.02 4.32 16 33 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.13 0.59 7.67 -2.39 -0.02 0.57 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.03 0.61 8.06 -2.39 -0.02 0.59 16 37 H 0.10 -0.04 7.80 -2.39 -0.02 -0.06 16 38 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.03 0.54 7.89 -2.39 -0.02 0.53 16 41 H 0.14 0.17 7.70 -2.39 -0.02 0.15 16 42 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 45 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 46 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 Total: -1.00 -86.71 377.21 5.18 -81.53 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.84 Total: 14.59 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.47 Total: 20.21 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.59 Total: -98.89 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -0.25 Total: -63.89 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.71 Total: 46.45 kcal Total: -86.71 5.18 -81.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647269992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.226 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds