Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48507 * 109.47122 * 239.99995 * 3 2 1 5 5 H 1.48492 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47142 * 120.00601 * 3 2 1 7 7 C 1.38628 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00229 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.35783 * 117.00227 * 174.90773 * 9 7 2 11 11 C 1.38903 * 120.00367 * 185.74107 * 10 9 7 12 12 C 1.38004 * 120.00230 * 179.76487 * 11 10 9 13 13 C 1.38907 * 120.00203 * 0.52683 * 12 11 10 14 14 N 1.40024 * 120.00327 * 179.69913 * 13 12 11 15 15 C 1.34778 * 120.00004 * 35.36722 * 14 13 12 16 16 O 1.21582 * 119.99698 * 355.69271 * 15 14 13 17 17 N 1.34773 * 119.99909 * 175.70039 * 15 14 13 18 18 C 1.46498 * 120.00007 * 184.58938 * 17 15 14 19 19 C 1.53002 * 109.54122 * 302.39496 * 18 17 15 20 20 N 1.46898 * 109.47359 * 305.73974 * 19 18 17 21 21 C 1.53171 * 109.54535 * 182.12883 * 18 17 15 22 22 C 1.53097 * 109.16409 * 297.11179 * 21 18 17 23 23 O 1.42900 * 109.41557 * 302.38968 * 22 21 18 24 24 C 1.42909 * 114.09279 * 61.15739 * 23 22 21 25 25 C 1.53095 * 109.41551 * 298.83826 * 24 23 22 26 26 C 1.38912 * 119.99394 * 359.72757 * 13 12 11 27 27 C 1.38011 * 120.00063 * 359.97438 * 26 13 12 28 28 H 0.96995 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99415 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.99944 * 180.25145 * 12 11 10 31 31 H 0.97007 * 119.99806 * 215.35898 * 14 13 12 32 32 H 0.97004 * 120.00390 * 4.58322 * 17 15 14 33 33 H 1.09007 * 109.46954 * 65.74166 * 19 18 17 34 34 H 1.09004 * 109.46894 * 185.73431 * 19 18 17 35 35 H 1.00895 * 111.00059 * 184.72232 * 20 19 18 36 36 H 1.00896 * 110.99350 * 308.67316 * 20 19 18 37 37 H 1.09003 * 109.52334 * 57.02278 * 21 18 17 38 38 H 1.09002 * 109.52424 * 177.20777 * 21 18 17 39 39 H 1.09005 * 109.47777 * 182.40959 * 22 21 18 40 40 H 1.09000 * 109.48537 * 62.38043 * 22 21 18 41 41 H 1.09001 * 109.47346 * 178.86114 * 24 23 22 42 42 H 1.08997 * 109.49219 * 58.83029 * 24 23 22 43 43 H 1.08998 * 109.52452 * 297.70522 * 25 24 23 44 44 H 1.08994 * 109.57002 * 177.54648 * 25 24 23 45 45 H 1.08002 * 119.99956 * 179.97438 * 26 13 12 46 46 H 1.08006 * 119.99662 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2126 5 1 1.2850 2.7464 -0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1085 11 6 1.4350 -4.7333 -0.2350 12 6 2.1823 -5.8878 -0.3496 13 6 3.5696 -5.8222 -0.3273 14 7 4.3279 -6.9943 -0.4372 15 6 3.9003 -8.0023 -1.2230 16 8 2.8193 -7.9267 -1.7745 17 7 4.6708 -9.0942 -1.3974 18 6 4.2529 -10.1445 -2.3293 19 6 2.8755 -10.6716 -1.9220 20 7 2.9101 -11.0976 -0.5166 21 6 5.2704 -11.2890 -2.3013 22 6 6.6264 -10.7680 -2.7846 23 8 6.4849 -10.2220 -4.0976 24 6 5.5814 -9.1175 -4.1759 25 6 4.1835 -9.5723 -3.7485 26 6 4.2047 -4.5939 -0.1954 27 6 3.4574 -3.4387 -0.0871 28 1 -0.4849 0.8400 0.0004 29 1 0.3562 -4.7849 -0.2472 30 1 1.6884 -6.8429 -0.4521 31 1 5.1610 -7.0806 0.0521 32 1 5.5022 -9.1847 -0.9059 33 1 2.1337 -9.8823 -2.0444 34 1 2.6103 -11.5203 -2.5526 35 1 2.0352 -11.5206 -0.2453 36 1 3.6825 -11.7244 -0.3478 37 1 5.3668 -11.6659 -1.2830 38 1 4.9338 -12.0918 -2.9573 39 1 7.3439 -11.5883 -2.8074 40 1 6.9815 -9.9932 -2.1050 41 1 5.5461 -8.7488 -5.2010 42 1 5.9225 -8.3210 -3.5146 43 1 3.8249 -10.3404 -4.4338 44 1 3.5018 -8.7220 -3.7655 45 1 5.2834 -4.5428 -0.1777 46 1 3.9512 -2.4836 0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647314683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = -61.758494 kcal Electronic energy + Delta-G solvation = -29304.161798 eV Core-core repulsion = 25195.030015 eV Total energy + Delta-G solvation = -4109.131783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05099 -39.49265 -38.51728 -36.87647 -35.89541 -33.97043 -33.20479 -32.14968 -31.50865 -31.31913 -30.12939 -27.65553 -26.47461 -25.26360 -24.11239 -22.65897 -22.29818 -21.92143 -20.57486 -19.57148 -18.50752 -17.71998 -17.24845 -16.87916 -16.56618 -16.34334 -15.70193 -15.62105 -15.07694 -14.90388 -14.65657 -14.50899 -14.15864 -14.02206 -13.55303 -13.51310 -13.46478 -13.12457 -12.93367 -12.71244 -12.56787 -12.37112 -12.06658 -11.79108 -11.68215 -11.49871 -11.44536 -11.01490 -10.97653 -10.72916 -10.66327 -10.43116 -9.97703 -9.66525 -9.51681 -9.16074 -9.03640 -8.80321 -8.62569 -8.12061 -6.83340 -6.39072 -3.97249 2.23638 2.32481 2.75591 3.15804 3.16905 3.20021 3.44994 3.54495 4.01206 4.12558 4.20816 4.35814 4.40422 4.55430 4.65783 4.74964 4.80021 5.06879 5.14553 5.18262 5.26053 5.32300 5.34575 5.41202 5.43821 5.61103 5.62103 5.71314 5.86809 5.92770 5.95511 6.21418 6.29088 6.38399 6.47187 6.76809 6.86174 6.91975 6.94572 7.00838 7.18439 7.21342 7.30530 7.34881 7.50248 7.88881 8.05479 8.16726 8.81917 9.06335 9.78120 10.79100 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.002355 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.737233 B =11888.103861 C =12432.581290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.145 3.855 11 C -0.179 4.179 12 C -0.065 4.065 13 C 0.058 3.942 14 N -0.677 5.677 15 C 0.712 3.288 16 O -0.573 6.573 17 N -0.729 5.729 18 C 0.203 3.797 19 C 0.049 3.951 20 N -0.839 5.839 21 C -0.161 4.161 22 C 0.062 3.938 23 O -0.383 6.383 24 C 0.065 3.935 25 C -0.167 4.167 26 C -0.094 4.094 27 C -0.220 4.220 28 H 0.270 0.730 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.395 0.605 32 H 0.390 0.610 33 H 0.106 0.894 34 H 0.026 0.974 35 H 0.341 0.659 36 H 0.330 0.670 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.388 -23.208 -3.370 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.092 3.908 11 C -0.199 4.199 12 C -0.085 4.085 13 C -0.035 4.035 14 N -0.324 5.324 15 C 0.413 3.587 16 O -0.450 6.450 17 N -0.385 5.385 18 C 0.115 3.885 19 C -0.083 4.083 20 N -0.369 5.369 21 C -0.199 4.199 22 C -0.015 4.015 23 O -0.302 6.302 24 C -0.012 4.012 25 C -0.206 4.206 26 C -0.115 4.115 27 C -0.240 4.240 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.228 0.772 32 H 0.224 0.776 33 H 0.124 0.876 34 H 0.044 0.956 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.126 0.874 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.159 -22.229 -3.892 25.634 hybrid contribution 1.072 -0.167 0.387 1.152 sum 13.231 -22.396 -3.505 26.247 Atomic orbital electron populations 1.70042 1.05920 1.27656 1.46309 1.25269 0.95827 0.98767 0.96706 0.85799 0.78686 0.79930 0.79101 1.19563 1.20337 1.19568 1.21247 0.91700 0.80951 1.52824 0.89216 1.83991 1.34189 1.11344 1.78736 1.19410 0.90227 0.88144 0.93069 1.20160 0.99673 0.89967 1.10098 1.20769 0.91873 0.98117 0.97773 1.17023 0.90411 0.83918 1.12157 1.42311 1.26184 1.15322 1.48543 1.15782 0.83903 0.79614 0.79432 1.90829 1.20889 1.80092 1.53157 1.44951 1.25589 1.20239 1.47699 1.20074 0.93710 0.86238 0.88463 1.22328 0.97973 0.99780 0.88178 1.58601 1.08245 1.48891 1.21151 1.22517 0.96364 0.98203 1.02856 1.22520 0.95911 0.98089 0.84954 1.87940 1.64491 1.49175 1.28558 1.22552 0.88275 0.88229 1.02143 1.22597 0.98982 1.03605 0.95425 1.20452 0.98277 0.90766 1.02009 1.20939 0.93692 0.98280 1.11064 0.92047 0.86301 0.85087 0.77160 0.77618 0.87629 0.95583 0.84637 0.85774 0.90084 0.89570 0.88718 0.93186 0.88748 0.92909 0.90478 0.88304 0.87402 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.03 9.48 30.88 0.29 -10.73 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -5.20 9.76 -0.01 0.00 -5.20 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 C -0.18 -4.02 9.98 -39.42 -0.39 -4.41 16 12 C -0.07 -1.31 8.68 -39.42 -0.34 -1.65 16 13 C 0.06 1.04 6.30 -83.62 -0.53 0.51 16 14 N -0.68 -9.27 5.34 -14.18 -0.08 -9.34 16 15 C 0.71 9.79 7.80 -86.92 -0.68 9.11 16 16 O -0.57 -9.87 10.13 5.29 0.05 -9.82 16 17 N -0.73 -6.87 3.97 -52.25 -0.21 -7.07 16 18 C 0.20 1.76 0.43 -131.64 -0.06 1.70 16 19 C 0.05 0.47 5.41 -3.82 -0.02 0.45 16 20 N -0.84 -7.18 9.37 -10.37 -0.10 -7.28 16 21 C -0.16 -0.97 4.69 -26.59 -0.12 -1.09 16 22 C 0.06 0.40 6.67 37.21 0.25 0.65 16 23 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 24 C 0.06 0.61 6.68 37.21 0.25 0.86 16 25 C -0.17 -1.65 4.80 -26.59 -0.13 -1.78 16 26 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 27 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 30 H 0.13 2.61 6.25 -52.48 -0.33 2.29 16 31 H 0.39 4.05 8.84 -40.82 -0.36 3.69 16 32 H 0.39 2.77 7.47 -40.82 -0.30 2.47 16 33 H 0.11 1.41 6.07 -51.93 -0.32 1.10 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.34 2.65 9.08 -39.29 -0.36 2.29 16 36 H 0.33 2.14 7.23 -39.29 -0.28 1.86 16 37 H 0.08 0.37 6.77 -51.93 -0.35 0.02 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.29 7.05 -51.93 -0.37 -0.07 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.26 6.46 -51.93 -0.34 0.93 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.13 2.78 5.64 -52.48 -0.30 2.48 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -33.76 364.98 -8.13 -41.88 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.07 Total: 13.93 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.59 Total: -9.34 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.38 Total: -48.63 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.33 Total: -19.01 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.76 -8.13 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647314683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.875 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds