Wall clock time and date at job start Tue Mar 31 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48507 * 109.47122 * 239.99995 * 3 2 1 5 5 H 1.48492 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47142 * 120.00601 * 3 2 1 7 7 C 1.38628 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00229 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.35783 * 117.00227 * 174.90773 * 9 7 2 11 11 C 1.38903 * 120.00367 * 185.74107 * 10 9 7 12 12 C 1.38004 * 120.00230 * 179.76487 * 11 10 9 13 13 C 1.38907 * 120.00203 * 0.52683 * 12 11 10 14 14 N 1.40024 * 120.00327 * 179.69913 * 13 12 11 15 15 C 1.34778 * 120.00004 * 35.36722 * 14 13 12 16 16 O 1.21582 * 119.99698 * 355.69271 * 15 14 13 17 17 N 1.34773 * 119.99909 * 175.70039 * 15 14 13 18 18 C 1.46498 * 120.00007 * 184.58938 * 17 15 14 19 19 C 1.53002 * 109.54122 * 302.39496 * 18 17 15 20 20 N 1.46898 * 109.47359 * 305.73974 * 19 18 17 21 21 C 1.53171 * 109.54535 * 182.12883 * 18 17 15 22 22 C 1.53097 * 109.16409 * 297.11179 * 21 18 17 23 23 O 1.42900 * 109.41557 * 302.38968 * 22 21 18 24 24 C 1.42909 * 114.09279 * 61.15739 * 23 22 21 25 25 C 1.53095 * 109.41551 * 298.83826 * 24 23 22 26 26 C 1.38912 * 119.99394 * 359.72757 * 13 12 11 27 27 C 1.38011 * 120.00063 * 359.97438 * 26 13 12 28 28 H 0.96995 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99415 * 359.97438 * 11 10 9 30 30 H 1.08006 * 119.99944 * 180.25145 * 12 11 10 31 31 H 0.97007 * 119.99806 * 215.35898 * 14 13 12 32 32 H 0.97004 * 120.00390 * 4.58322 * 17 15 14 33 33 H 1.09007 * 109.46954 * 65.74166 * 19 18 17 34 34 H 1.09004 * 109.46894 * 185.73431 * 19 18 17 35 35 H 1.00895 * 111.00059 * 184.72232 * 20 19 18 36 36 H 1.00896 * 110.99350 * 308.67316 * 20 19 18 37 37 H 1.09003 * 109.52334 * 57.02278 * 21 18 17 38 38 H 1.09002 * 109.52424 * 177.20777 * 21 18 17 39 39 H 1.09005 * 109.47777 * 182.40959 * 22 21 18 40 40 H 1.09000 * 109.48537 * 62.38043 * 22 21 18 41 41 H 1.09001 * 109.47346 * 178.86114 * 24 23 22 42 42 H 1.08997 * 109.49219 * 58.83029 * 24 23 22 43 43 H 1.08998 * 109.52452 * 297.70522 * 25 24 23 44 44 H 1.08994 * 109.57002 * 177.54648 * 25 24 23 45 45 H 1.08002 * 119.99956 * 179.97438 * 26 13 12 46 46 H 1.08006 * 119.99662 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2126 5 1 1.2850 2.7464 -0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1085 11 6 1.4350 -4.7333 -0.2350 12 6 2.1823 -5.8878 -0.3496 13 6 3.5696 -5.8222 -0.3273 14 7 4.3279 -6.9943 -0.4372 15 6 3.9003 -8.0023 -1.2230 16 8 2.8193 -7.9267 -1.7745 17 7 4.6708 -9.0942 -1.3974 18 6 4.2529 -10.1445 -2.3293 19 6 2.8755 -10.6716 -1.9220 20 7 2.9101 -11.0976 -0.5166 21 6 5.2704 -11.2890 -2.3013 22 6 6.6264 -10.7680 -2.7846 23 8 6.4849 -10.2220 -4.0976 24 6 5.5814 -9.1175 -4.1759 25 6 4.1835 -9.5723 -3.7485 26 6 4.2047 -4.5939 -0.1954 27 6 3.4574 -3.4387 -0.0871 28 1 -0.4849 0.8400 0.0004 29 1 0.3562 -4.7849 -0.2472 30 1 1.6884 -6.8429 -0.4521 31 1 5.1610 -7.0806 0.0521 32 1 5.5022 -9.1847 -0.9059 33 1 2.1337 -9.8823 -2.0444 34 1 2.6103 -11.5203 -2.5526 35 1 2.0352 -11.5206 -0.2453 36 1 3.6825 -11.7244 -0.3478 37 1 5.3668 -11.6659 -1.2830 38 1 4.9338 -12.0918 -2.9573 39 1 7.3439 -11.5883 -2.8074 40 1 6.9815 -9.9932 -2.1050 41 1 5.5461 -8.7488 -5.2010 42 1 5.9225 -8.3210 -3.5146 43 1 3.8249 -10.3404 -4.4338 44 1 3.5018 -8.7220 -3.7655 45 1 5.2834 -4.5428 -0.1777 46 1 3.9512 -2.4836 0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647314683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:25 Heat of formation + Delta-G solvation = -88.950254 kcal Electronic energy + Delta-G solvation = -29305.340922 eV Core-core repulsion = 25195.030015 eV Total energy + Delta-G solvation = -4110.310907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00542 -40.85200 -39.91721 -38.24172 -36.98123 -35.32873 -34.29152 -33.92317 -32.29042 -32.06149 -31.81189 -29.22043 -27.37623 -27.10156 -24.75048 -23.96218 -23.54962 -23.09227 -21.98195 -20.47893 -19.99930 -19.21692 -18.87683 -18.04582 -17.51628 -16.99458 -16.72676 -16.51826 -16.32312 -16.21567 -15.84763 -15.67476 -15.51087 -15.41429 -15.16293 -14.69950 -14.52549 -14.27253 -14.19996 -13.82084 -13.62779 -13.55590 -13.25352 -13.16406 -13.08668 -12.85848 -12.63545 -12.41427 -12.31348 -12.14100 -11.71503 -11.42197 -11.29662 -11.02615 -10.82063 -10.57379 -10.45302 -9.91822 -9.79025 -9.50142 -8.51519 -8.42500 -6.10112 0.57227 0.65308 1.37463 1.48323 1.54118 1.70260 2.20954 2.27465 2.88171 2.93593 3.19956 3.24570 3.48286 3.57263 3.65681 3.78419 3.92976 4.09027 4.09958 4.19060 4.23919 4.40812 4.48674 4.54559 4.58294 4.65724 4.66789 4.78632 4.81346 4.83654 5.03657 5.05933 5.08078 5.09522 5.16121 5.25475 5.36430 5.50827 5.61738 5.66403 5.75263 6.05318 6.10844 6.23823 6.25890 6.26908 6.64751 7.01420 7.17019 7.71618 7.83753 8.80625 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.002355 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.737233 B =11888.103861 C =12432.581290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.020 2.980 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.412 4.412 8 H 0.106 0.894 9 O -0.234 6.234 10 C 0.105 3.895 11 C -0.191 4.191 12 C -0.070 4.070 13 C 0.089 3.911 14 N -0.667 5.667 15 C 0.708 3.292 16 O -0.607 6.607 17 N -0.707 5.707 18 C 0.201 3.799 19 C 0.053 3.947 20 N -0.845 5.845 21 C -0.150 4.150 22 C 0.054 3.946 23 O -0.397 6.397 24 C 0.070 3.930 25 C -0.165 4.165 26 C -0.084 4.084 27 C -0.220 4.220 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.407 0.593 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.345 0.655 36 H 0.345 0.655 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.156 0.844 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.608 -25.430 -3.062 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.123 0.877 9 O -0.141 6.141 10 C 0.055 3.945 11 C -0.210 4.210 12 C -0.090 4.090 13 C -0.006 4.006 14 N -0.316 5.316 15 C 0.409 3.591 16 O -0.487 6.487 17 N -0.363 5.363 18 C 0.114 3.886 19 C -0.079 4.079 20 N -0.377 5.377 21 C -0.188 4.188 22 C -0.022 4.022 23 O -0.316 6.316 24 C -0.007 4.007 25 C -0.204 4.204 26 C -0.104 4.104 27 C -0.239 4.239 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.255 0.745 32 H 0.244 0.756 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.174 0.826 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.476 -24.563 -3.567 29.792 hybrid contribution -0.133 0.097 0.243 0.293 sum 16.343 -24.466 -3.324 29.610 Atomic orbital electron populations 1.70208 1.08145 1.28765 1.49176 1.26629 0.96840 1.02861 0.95988 0.84630 0.77333 0.74129 0.80009 1.18153 1.19938 1.17854 1.21826 0.92655 0.81379 1.52952 0.87695 1.83958 1.35944 1.12530 1.81638 1.19844 0.91794 0.87647 0.95263 1.20259 0.99647 0.90455 1.10688 1.20829 0.93142 0.97089 0.97971 1.17094 0.89874 0.85608 1.08011 1.42143 1.26555 1.13952 1.48994 1.15976 0.83773 0.80326 0.79074 1.90845 1.22727 1.80789 1.54319 1.44758 1.25419 1.18855 1.47228 1.20187 0.94342 0.86706 0.87336 1.22139 0.97422 0.99038 0.89258 1.58546 1.09217 1.49654 1.20290 1.22475 0.95019 0.96815 1.04472 1.22790 0.96498 0.99026 0.83874 1.87933 1.64194 1.48959 1.30486 1.22444 0.87920 0.88289 1.02053 1.22529 0.98643 1.02586 0.96639 1.20796 1.00393 0.89188 1.00016 1.21094 0.92555 0.99826 1.10455 0.91960 0.87396 0.85012 0.74487 0.75634 0.91680 0.94266 0.84193 0.84105 0.87766 0.88888 0.86575 0.92204 0.88802 0.93516 0.89834 0.91627 0.82621 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.93 13.67 21.61 0.30 -57.64 16 2 C -0.03 -1.51 5.49 84.82 0.47 -1.05 16 3 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -24.20 9.48 67.91 0.64 -23.56 16 8 H 0.11 5.53 5.20 -2.91 -0.02 5.52 16 9 O -0.23 -14.44 9.76 -22.95 -0.22 -14.66 16 10 C 0.11 5.41 6.65 22.59 0.15 5.56 16 11 C -0.19 -8.98 9.98 22.37 0.22 -8.75 16 12 C -0.07 -2.82 8.68 22.37 0.19 -2.62 16 13 C 0.09 2.99 6.30 38.15 0.24 3.23 16 14 N -0.67 -16.12 5.34 -317.05 -1.69 -17.82 16 15 C 0.71 17.99 7.80 179.05 1.40 19.39 16 16 O -0.61 -20.74 10.13 -3.97 -0.04 -20.78 16 17 N -0.71 -11.23 3.97 -437.48 -1.73 -12.96 16 18 C 0.20 3.02 0.43 3.72 0.00 3.02 16 19 C 0.05 0.95 5.41 86.30 0.47 1.42 16 20 N -0.85 -12.51 9.37 -186.71 -1.75 -14.26 16 21 C -0.15 -1.20 4.69 30.68 0.14 -1.06 16 22 C 0.05 0.48 6.67 72.01 0.48 0.96 16 23 O -0.40 -6.37 10.77 -148.98 -1.60 -7.97 16 24 C 0.07 1.21 6.68 72.01 0.48 1.69 16 25 C -0.16 -3.08 4.80 30.69 0.15 -2.93 16 26 C -0.08 -2.80 9.96 22.38 0.22 -2.58 16 27 C -0.22 -9.47 9.16 22.37 0.20 -9.26 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.13 5.32 6.25 -2.91 -0.02 5.31 16 31 H 0.42 6.58 8.84 -92.70 -0.82 5.76 16 32 H 0.41 3.98 7.47 -92.71 -0.69 3.29 16 33 H 0.06 1.76 6.07 -2.38 -0.01 1.74 16 34 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.35 4.77 9.08 -89.70 -0.81 3.95 16 36 H 0.34 3.25 7.23 -89.70 -0.65 2.60 16 37 H 0.10 0.41 6.77 -2.39 -0.02 0.39 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.06 0.42 7.05 -2.39 -0.02 0.40 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.70 6.46 -2.39 -0.02 1.69 16 45 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 46 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -80.06 364.98 -1.16 -81.22 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -1.90 Total: 36.29 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.46 Total: -16.54 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.88 Total: -102.68 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.87 Total: -43.42 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -80.06 -1.16 -81.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647314683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.735 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds