Wall clock time and date at job start Tue Mar 31 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47586 * 300.00448 * 3 2 1 6 6 H 1.48501 * 109.46938 * 60.00475 * 3 2 1 7 7 C 1.38626 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99705 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00031 * 185.17135 * 9 7 2 11 11 C 1.38902 * 119.99790 * 354.94587 * 10 9 7 12 12 C 1.38011 * 119.99631 * 180.02562 * 11 10 9 13 13 C 1.38900 * 120.00327 * 0.02562 * 12 11 10 14 14 N 1.40025 * 120.00783 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00301 * 214.49462 * 14 13 12 16 16 O 1.21589 * 120.00373 * 5.89041 * 15 14 13 17 17 N 1.34784 * 119.99928 * 185.89341 * 15 14 13 18 18 C 1.47075 * 120.88168 * 174.82367 * 17 15 14 19 19 C 1.53245 * 108.51838 * 128.83766 * 18 17 15 20 20 N 1.46899 * 109.33757 * 53.83294 * 19 18 17 21 21 C 1.46902 * 110.99463 * 172.74598 * 20 19 18 22 22 C 1.53005 * 109.46679 * 176.68440 * 21 20 19 23 23 O 1.42900 * 109.47195 * 60.32698 * 22 21 20 24 24 C 1.46892 * 111.26790 * 296.88985 * 20 19 18 25 25 C 1.47077 * 120.88082 * 354.85114 * 17 15 14 26 26 C 1.38913 * 119.99804 * 0.25117 * 13 12 11 27 27 C 1.38014 * 119.99795 * 359.49186 * 26 13 12 28 28 H 0.97002 * 120.00137 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.00084 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.99449 * 179.97438 * 12 11 10 31 31 H 0.97006 * 119.99601 * 34.48189 * 14 13 12 32 32 H 1.09006 * 109.62907 * 9.13056 * 18 17 15 33 33 H 1.08993 * 109.79582 * 248.64308 * 18 17 15 34 34 H 1.09008 * 109.48857 * 173.79200 * 19 18 17 35 35 H 1.08997 * 109.49519 * 293.87070 * 19 18 17 36 36 H 1.09004 * 109.47389 * 296.67908 * 21 20 19 37 37 H 1.08996 * 109.47656 * 56.68617 * 21 20 19 38 38 H 1.08998 * 109.46630 * 180.32529 * 22 21 20 39 39 H 1.09000 * 109.47200 * 300.32739 * 22 21 20 40 40 H 0.96698 * 114.00373 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.49801 * 303.14698 * 24 20 19 42 42 H 1.09006 * 109.51674 * 183.07617 * 24 20 19 43 43 H 1.09004 * 109.62860 * 350.87234 * 25 17 15 44 44 H 1.08995 * 109.63087 * 111.44865 * 25 17 15 45 45 H 1.08004 * 120.00389 * 179.75234 * 26 13 12 46 46 H 1.07998 * 119.99858 * 180.25430 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3966 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0701 -3.5044 0.1080 11 6 3.4574 -3.4366 0.1067 12 6 4.2048 -4.5917 0.2165 13 6 3.5697 -5.8220 0.3277 14 7 4.3278 -6.9940 0.4385 15 6 3.8864 -8.1377 -0.1214 16 8 2.8860 -8.1297 -0.8125 17 7 4.5538 -9.2904 0.0848 18 6 4.0290 -10.5675 -0.4217 19 6 5.1391 -11.2721 -1.2087 20 7 6.3373 -11.3833 -0.3662 21 6 7.3662 -12.2031 -1.0199 22 6 8.6261 -12.2277 -0.1520 23 8 8.3151 -12.7925 1.1232 24 6 6.8653 -10.0588 -0.0132 25 6 5.8259 -9.3045 0.8228 26 6 2.1822 -5.8902 0.3231 27 6 1.4348 -4.7347 0.2187 28 1 -0.4850 0.8400 0.0004 29 1 3.9512 -2.4802 0.0199 30 1 5.2836 -4.5390 0.2151 31 1 5.1709 -6.9826 0.9181 32 1 3.1782 -10.3798 -1.0768 33 1 3.7168 -11.1953 0.4128 34 1 4.8040 -12.2683 -1.4978 35 1 5.3750 -10.6938 -2.1020 36 1 6.9937 -13.2194 -1.1483 37 1 7.6048 -11.7777 -1.9946 38 1 9.3915 -12.8312 -0.6399 39 1 8.9954 -11.2108 -0.0187 40 1 9.0691 -12.8400 1.7268 41 1 7.0772 -9.4973 -0.9231 42 1 7.7823 -10.1744 0.5646 43 1 6.1633 -8.2816 0.9905 44 1 5.6889 -9.8092 1.7791 45 1 1.6883 -6.8472 0.4055 46 1 0.3562 -4.7874 0.2193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649717325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:16 Heat of formation + Delta-G solvation = -42.372222 kcal Electronic energy + Delta-G solvation = -28353.539881 eV Core-core repulsion = 24245.248750 eV Total energy + Delta-G solvation = -4108.291132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71355 -39.26245 -38.53809 -37.10278 -36.37610 -34.72622 -33.91815 -32.16820 -31.45209 -30.17401 -30.10280 -27.92982 -26.37825 -25.25102 -24.25876 -22.78143 -22.15810 -21.58833 -20.82199 -19.52811 -18.51464 -17.87753 -17.86145 -17.22091 -16.53055 -16.38834 -15.63918 -15.46849 -15.19663 -15.02195 -14.58235 -14.50165 -14.33782 -14.00963 -13.78931 -13.64675 -13.47661 -13.32058 -12.78355 -12.65993 -12.49137 -12.31772 -12.02638 -11.86495 -11.69781 -11.60880 -11.46892 -11.41482 -11.07612 -11.02985 -10.69274 -10.42807 -10.41014 -9.92805 -9.54627 -9.24516 -8.98618 -8.69302 -8.53741 -8.16069 -6.85878 -6.41076 -3.99082 2.19648 2.26072 2.59580 3.13009 3.15252 3.20937 3.29625 3.43273 3.80902 3.85800 3.99510 4.45352 4.47361 4.61957 4.64080 4.67171 4.84462 4.85717 4.91576 5.00689 5.13535 5.17260 5.19382 5.34616 5.36663 5.37384 5.51145 5.54292 5.59338 5.77604 5.81433 6.12307 6.20573 6.28651 6.37834 6.53169 6.62399 6.75377 6.86950 6.95456 7.14726 7.21193 7.26486 7.28381 7.46749 7.83985 7.99778 8.03819 8.68731 9.04424 9.75910 10.77125 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.001951 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.293716 B =14347.992232 C =14966.840134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.218 4.218 12 C -0.093 4.093 13 C 0.057 3.943 14 N -0.676 5.676 15 C 0.704 3.296 16 O -0.574 6.574 17 N -0.633 5.633 18 C 0.136 3.864 19 C 0.040 3.960 20 N -0.526 5.526 21 C 0.054 3.946 22 C 0.074 3.926 23 O -0.557 6.557 24 C 0.037 3.963 25 C 0.118 3.882 26 C -0.066 4.066 27 C -0.176 4.176 28 H 0.269 0.731 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.374 0.626 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.111 -23.318 1.321 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.092 3.908 11 C -0.238 4.238 12 C -0.114 4.114 13 C -0.036 4.036 14 N -0.325 5.325 15 C 0.406 3.594 16 O -0.450 6.450 17 N -0.372 5.372 18 C 0.013 3.987 19 C -0.089 4.089 20 N -0.251 5.251 21 C -0.073 4.073 22 C -0.004 4.004 23 O -0.361 6.361 24 C -0.092 4.092 25 C -0.006 4.006 26 C -0.086 4.086 27 C -0.196 4.196 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.221 0.779 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.142 0.858 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.192 -23.390 0.952 29.044 hybrid contribution 1.987 1.253 -0.351 2.375 sum 19.179 -22.138 0.601 29.296 Atomic orbital electron populations 1.70061 1.05919 1.27467 1.46335 1.25285 0.95845 0.98805 0.96707 0.85650 0.79078 0.80485 0.78200 1.19160 1.20209 1.20199 1.21351 0.91773 0.80898 1.52642 0.89070 1.83994 1.34205 1.11362 1.78612 1.19397 0.90222 0.88122 0.93100 1.20949 0.93673 0.98347 1.10857 1.20424 0.98307 0.91108 1.01540 1.17037 0.90448 0.83953 1.12169 1.42517 1.25048 1.07484 1.57440 1.15839 0.83263 0.80159 0.80151 1.90935 1.26981 1.84704 1.42408 1.47305 1.23945 1.06264 1.59720 1.21517 0.96093 0.82463 0.98672 1.22550 0.91052 1.00911 0.94351 1.61909 1.05724 1.13686 1.43753 1.22173 0.91513 0.99091 0.94572 1.22270 0.95985 0.97047 0.85073 1.86635 1.39143 1.85012 1.25304 1.22568 0.98073 0.89281 0.99238 1.21682 0.83244 1.00075 0.95593 1.20608 0.91786 0.97705 0.98538 1.20130 0.99702 0.89741 1.10004 0.92124 0.85131 0.87332 0.76805 0.88316 0.90898 0.89432 0.94287 0.89704 0.93487 0.93304 0.93454 0.77949 0.94498 0.89180 0.90281 0.90303 0.85795 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.39 -10.98 9.48 30.88 0.29 -10.69 16 8 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 9 O -0.18 -5.17 9.76 -0.01 0.00 -5.17 16 10 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 11 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 12 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 13 C 0.06 1.05 6.26 -83.62 -0.52 0.53 16 14 N -0.68 -9.95 5.25 -14.18 -0.07 -10.03 16 15 C 0.70 10.96 8.03 -86.91 -0.70 10.26 16 16 O -0.57 -11.24 13.57 5.29 0.07 -11.17 16 17 N -0.63 -7.38 3.01 -178.19 -0.54 -7.91 16 18 C 0.14 1.41 6.61 -3.60 -0.02 1.39 16 19 C 0.04 0.34 5.62 -3.70 -0.02 0.32 16 20 N -0.53 -4.23 4.60 -234.31 -1.08 -5.31 16 21 C 0.05 0.35 5.52 -3.82 -0.02 0.32 16 22 C 0.07 0.37 6.63 37.16 0.25 0.62 16 23 O -0.56 -3.59 13.53 -35.23 -0.48 -4.07 16 24 C 0.04 0.28 5.24 -3.70 -0.02 0.26 16 25 C 0.12 0.99 6.54 -3.60 -0.02 0.97 16 26 C -0.07 -1.36 8.64 -39.41 -0.34 -1.70 16 27 C -0.18 -3.98 9.99 -39.42 -0.39 -4.37 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.13 2.81 5.62 -52.49 -0.30 2.52 16 30 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 31 H 0.40 4.40 6.35 -40.82 -0.26 4.15 16 32 H 0.10 1.17 7.04 -51.93 -0.37 0.80 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.61 8.11 -51.92 -0.42 0.19 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.05 0.20 6.14 -51.93 -0.32 -0.12 16 40 H 0.37 0.81 9.12 45.56 0.42 1.23 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.54 5.77 -51.93 -0.30 0.24 16 43 H 0.08 0.55 5.73 -51.93 -0.30 0.25 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.12 2.50 6.50 -52.48 -0.34 2.16 16 46 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -35.86 371.09 -8.80 -44.66 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.40 Total: 7.67 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.64 Total: -5.05 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.93 Total: -48.07 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.41 Total: -20.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.86 -8.80 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649717325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.287 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds