Wall clock time and date at job start Tue Mar 31 2020 18:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86810 * 119.99593 * 2 1 4 4 H 1.48494 * 109.47051 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47180 * 30.00620 * 3 2 1 6 6 H 1.48501 * 109.46801 * 150.00471 * 3 2 1 7 7 C 1.38943 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99978 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99951 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00203 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47381 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00220 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47394 * 155.00114 * 14 13 12 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 N 1.46500 * 109.47473 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00270 * 154.99797 * 18 17 16 20 20 O 1.21699 * 119.99595 * 0.02562 * 19 18 17 21 21 C 1.46652 * 120.00123 * 180.02562 * 19 18 17 22 22 C 1.36545 * 125.98604 * 179.71947 * 21 19 18 23 23 C 1.40368 * 106.70595 * 179.85166 * 22 21 19 24 24 C 1.35131 * 107.11277 * 0.40734 * 23 22 21 25 25 O 1.33930 * 108.76856 * 359.74581 * 24 23 22 26 26 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 27 27 C 1.52997 * 109.47254 * 274.99988 * 14 13 12 28 28 H 0.97002 * 120.00401 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00416 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47379 * 59.99241 * 12 10 9 31 31 H 1.09007 * 109.47050 * 300.00331 * 12 10 9 32 32 H 1.00896 * 111.00346 * 303.95105 * 13 12 10 33 33 H 1.09002 * 109.47496 * 34.99776 * 14 13 12 34 34 H 1.08992 * 109.47063 * 59.99965 * 15 14 13 35 35 H 1.09004 * 109.46733 * 299.99678 * 15 14 13 36 36 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 37 37 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 39 39 H 0.97000 * 119.99491 * 335.00093 * 18 17 16 40 40 H 1.07991 * 126.64724 * 359.95668 * 22 21 19 41 41 H 1.08001 * 126.44453 * 180.15567 * 23 22 21 42 42 H 1.08008 * 125.61277 * 179.78245 * 24 23 22 43 43 H 1.09000 * 109.47486 * 180.02562 * 26 17 16 44 44 H 1.09002 * 109.46716 * 60.00091 * 26 17 16 45 45 H 1.09002 * 109.47153 * 300.00004 * 27 14 13 46 46 H 1.09001 * 109.47289 * 60.00087 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1385 -0.0005 9 7 3.3799 -1.2031 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3703 -0.0022 13 7 6.0506 -3.7552 -0.0014 14 6 7.5190 -3.7943 -0.0031 15 6 7.9948 -5.1141 0.6073 16 6 9.5243 -5.1546 0.6061 17 6 10.0362 -5.0437 -0.8314 18 7 11.5007 -5.0831 -0.8327 19 6 12.1627 -5.5011 -1.9298 20 8 11.5438 -5.8455 -2.9195 21 6 13.6286 -5.5410 -1.9309 22 6 14.4195 -5.9463 -2.9676 23 6 15.7487 -5.8182 -2.5352 24 6 15.7112 -5.3550 -1.2663 25 8 14.4320 -5.1892 -0.9058 26 6 9.5605 -3.7240 -1.4419 27 6 8.0305 -3.6837 -1.4408 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3631 -0.0014 30 1 5.9249 -1.8559 0.8872 31 1 5.9234 -1.8567 -0.8928 32 1 5.6758 -4.2708 0.7807 33 1 7.9054 -2.9618 0.5850 34 1 7.6085 -5.9465 0.0192 35 1 7.6305 -5.1929 1.6316 36 1 9.9103 -4.3221 1.1945 37 1 9.8632 -6.0950 1.0405 38 1 9.6502 -5.8762 -1.4198 39 1 11.9939 -4.8082 -0.0440 40 1 14.0868 -6.2958 -3.9337 41 1 16.6347 -6.0505 -3.1074 42 1 16.5712 -5.1513 -0.6454 43 1 9.9248 -3.6452 -2.4662 44 1 9.9465 -2.8915 -0.8536 45 1 7.6442 -4.5162 -2.0289 46 1 7.6916 -2.7434 -1.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662091834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:56 Heat of formation + Delta-G solvation = -60.513432 kcal Electronic energy + Delta-G solvation = -27743.375460 eV Core-core repulsion = 23634.297667 eV Total energy + Delta-G solvation = -4109.077793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14800 -40.27732 -38.85600 -38.07408 -35.57191 -34.02203 -33.61617 -33.09337 -31.64190 -31.04862 -30.56341 -28.75519 -26.22123 -24.18569 -23.55592 -22.86522 -22.25981 -21.43799 -20.74156 -20.10867 -19.35748 -18.87210 -18.27112 -16.81184 -16.78886 -16.68616 -16.21134 -15.43242 -15.23860 -14.92304 -14.86827 -14.59894 -14.32327 -14.15843 -13.77668 -13.70323 -13.48680 -13.25535 -13.15523 -13.02038 -12.59240 -12.46859 -12.24929 -12.09998 -11.95116 -11.48906 -11.45262 -11.27382 -11.14553 -10.67090 -10.58709 -10.55874 -10.51382 -10.42559 -9.96075 -9.55659 -9.50514 -9.13894 -8.55047 -8.17678 -8.11211 -6.29579 -3.80923 0.59896 1.87328 2.19416 2.77142 2.78862 3.03156 3.08021 3.15824 3.76230 4.04849 4.11699 4.19558 4.37552 4.41445 4.48020 4.55004 4.78923 4.93180 4.97633 5.07561 5.12940 5.20022 5.23168 5.24757 5.28118 5.28285 5.39996 5.50061 5.57116 5.64965 5.71903 5.78170 5.81838 5.88576 5.94275 5.99206 6.02438 6.06875 6.13545 6.31581 6.37160 7.05130 7.17204 7.59826 7.63202 7.68506 8.16450 8.61658 8.96776 9.44253 9.84913 10.83598 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028190 B = 0.001727 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.011752 B =16207.398580 C =16584.958575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.564 6.564 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.086 3.914 15 C -0.117 4.117 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.716 5.716 19 C 0.602 3.398 20 O -0.516 6.516 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.225 4.225 24 C -0.007 4.007 25 O -0.165 6.165 26 C -0.128 4.128 27 C -0.106 4.106 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.351 0.649 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.404 0.596 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.725 -7.830 0.701 35.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.084 4.084 13 N -0.298 5.298 14 C -0.024 4.024 15 C -0.155 4.155 16 C -0.160 4.160 17 C 0.040 3.960 18 N -0.366 5.366 19 C 0.388 3.612 20 O -0.393 6.393 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.244 4.244 24 C -0.077 4.077 25 O -0.061 6.061 26 C -0.167 4.167 27 C -0.144 4.144 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.238 0.762 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 33.428 -8.641 -0.393 34.529 hybrid contribution 1.299 1.891 1.126 2.555 sum 34.727 -6.750 0.732 35.384 Atomic orbital electron populations 1.69620 1.05633 1.27459 1.49473 1.25032 0.95485 0.97946 0.97687 0.86672 0.79725 0.84074 0.78910 1.19593 1.20210 1.19565 1.19437 0.79276 0.96636 1.48015 0.86283 1.42213 1.07522 1.06168 1.67205 1.19737 0.88246 0.84541 0.83890 1.90566 1.69461 1.30934 1.53619 1.21750 0.94899 0.90631 1.01141 1.60048 1.05697 1.12611 1.51413 1.21572 0.88120 0.96507 0.96174 1.21643 0.93919 0.98486 1.01500 1.21758 0.96480 1.02623 0.95113 1.21169 0.77717 0.99581 0.97551 1.46019 1.08027 1.66517 1.15989 1.16556 0.83185 0.77699 0.83731 1.90918 1.66335 1.48795 1.33219 1.22155 0.91495 1.10817 0.88733 1.22027 0.92117 1.00023 0.99908 1.21902 0.98260 1.07662 0.96577 1.24440 0.84488 1.01757 0.97048 1.84055 1.16796 1.66477 1.38737 1.21936 0.96592 0.96605 1.01540 1.21510 0.92926 1.03310 0.96682 0.91638 0.79724 0.93884 0.89547 0.82852 0.94005 0.90309 0.91216 0.91304 0.90997 0.88723 0.76169 0.82143 0.82510 0.77275 0.91205 0.91875 0.90641 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 7 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -14.21 5.09 -10.97 -0.06 -14.27 16 10 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 11 O -0.56 -15.27 15.78 5.54 0.09 -15.18 16 12 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 13 N -0.66 -10.11 5.93 -107.99 -0.64 -10.75 16 14 C 0.09 0.97 2.49 -67.71 -0.17 0.80 16 15 C -0.12 -1.07 5.19 -26.73 -0.14 -1.21 16 16 C -0.12 -0.88 5.39 -26.73 -0.14 -1.02 16 17 C 0.14 1.26 2.45 -67.93 -0.17 1.09 16 18 N -0.72 -5.77 5.07 -55.12 -0.28 -6.05 16 19 C 0.60 6.25 7.75 -12.86 -0.10 6.15 16 20 O -0.52 -7.08 16.53 5.19 0.09 -6.99 16 21 C -0.08 -0.71 7.13 -36.80 -0.26 -0.97 16 22 C -0.12 -0.96 10.62 -39.39 -0.42 -1.38 16 23 C -0.22 -1.25 10.88 -39.89 -0.43 -1.68 16 24 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 25 O -0.17 -1.18 10.40 5.01 0.05 -1.12 16 26 C -0.13 -1.22 5.50 -26.71 -0.15 -1.37 16 27 C -0.11 -1.18 5.43 -26.71 -0.14 -1.33 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 30 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 31 H 0.09 1.31 7.44 -51.92 -0.39 0.92 16 32 H 0.35 5.49 8.05 -39.29 -0.32 5.18 16 33 H 0.04 0.45 7.80 -51.93 -0.41 0.04 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 39 H 0.40 2.37 8.36 -40.82 -0.34 2.03 16 40 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.16 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.21 0.11 8.06 -52.48 -0.42 -0.31 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.79 7.45 -51.93 -0.39 0.41 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -35.33 382.91 -7.72 -43.05 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.67 Total: 13.37 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.13 Total: 2.56 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.20 Total: -56.22 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.23 Total: -23.30 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.33 -7.72 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662091834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.468 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds