Wall clock time and date at job start Tue Mar 31 2020 18:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86810 * 119.99593 * 2 1 4 4 H 1.48494 * 109.47051 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47180 * 30.00620 * 3 2 1 6 6 H 1.48501 * 109.46801 * 150.00471 * 3 2 1 7 7 C 1.38943 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99978 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99951 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00203 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47381 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00220 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47394 * 155.00114 * 14 13 12 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 N 1.46500 * 109.47473 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00270 * 154.99797 * 18 17 16 20 20 O 1.21699 * 119.99595 * 0.02562 * 19 18 17 21 21 C 1.46652 * 120.00123 * 180.02562 * 19 18 17 22 22 C 1.36545 * 125.98604 * 179.71947 * 21 19 18 23 23 C 1.40368 * 106.70595 * 179.85166 * 22 21 19 24 24 C 1.35131 * 107.11277 * 0.40734 * 23 22 21 25 25 O 1.33930 * 108.76856 * 359.74581 * 24 23 22 26 26 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 27 27 C 1.52997 * 109.47254 * 274.99988 * 14 13 12 28 28 H 0.97002 * 120.00401 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00416 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47379 * 59.99241 * 12 10 9 31 31 H 1.09007 * 109.47050 * 300.00331 * 12 10 9 32 32 H 1.00896 * 111.00346 * 303.95105 * 13 12 10 33 33 H 1.09002 * 109.47496 * 34.99776 * 14 13 12 34 34 H 1.08992 * 109.47063 * 59.99965 * 15 14 13 35 35 H 1.09004 * 109.46733 * 299.99678 * 15 14 13 36 36 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 37 37 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 39 39 H 0.97000 * 119.99491 * 335.00093 * 18 17 16 40 40 H 1.07991 * 126.64724 * 359.95668 * 22 21 19 41 41 H 1.08001 * 126.44453 * 180.15567 * 23 22 21 42 42 H 1.08008 * 125.61277 * 179.78245 * 24 23 22 43 43 H 1.09000 * 109.47486 * 180.02562 * 26 17 16 44 44 H 1.09002 * 109.46716 * 60.00091 * 26 17 16 45 45 H 1.09002 * 109.47153 * 300.00004 * 27 14 13 46 46 H 1.09001 * 109.47289 * 60.00087 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1385 -0.0005 9 7 3.3799 -1.2031 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3703 -0.0022 13 7 6.0506 -3.7552 -0.0014 14 6 7.5190 -3.7943 -0.0031 15 6 7.9948 -5.1141 0.6073 16 6 9.5243 -5.1546 0.6061 17 6 10.0362 -5.0437 -0.8314 18 7 11.5007 -5.0831 -0.8327 19 6 12.1627 -5.5011 -1.9298 20 8 11.5438 -5.8455 -2.9195 21 6 13.6286 -5.5410 -1.9309 22 6 14.4195 -5.9463 -2.9676 23 6 15.7487 -5.8182 -2.5352 24 6 15.7112 -5.3550 -1.2663 25 8 14.4320 -5.1892 -0.9058 26 6 9.5605 -3.7240 -1.4419 27 6 8.0305 -3.6837 -1.4408 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3631 -0.0014 30 1 5.9249 -1.8559 0.8872 31 1 5.9234 -1.8567 -0.8928 32 1 5.6758 -4.2708 0.7807 33 1 7.9054 -2.9618 0.5850 34 1 7.6085 -5.9465 0.0192 35 1 7.6305 -5.1929 1.6316 36 1 9.9103 -4.3221 1.1945 37 1 9.8632 -6.0950 1.0405 38 1 9.6502 -5.8762 -1.4198 39 1 11.9939 -4.8082 -0.0440 40 1 14.0868 -6.2958 -3.9337 41 1 16.6347 -6.0505 -3.1074 42 1 16.5712 -5.1513 -0.6454 43 1 9.9248 -3.6452 -2.4662 44 1 9.9465 -2.8915 -0.8536 45 1 7.6442 -4.5162 -2.0289 46 1 7.6916 -2.7434 -1.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662091834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:55 Heat of formation + Delta-G solvation = -89.010240 kcal Electronic energy + Delta-G solvation = -27744.611174 eV Core-core repulsion = 23634.297667 eV Total energy + Delta-G solvation = -4110.313508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63697 -41.06252 -40.33629 -39.29701 -36.61691 -35.92419 -34.33800 -33.93126 -33.71627 -31.81320 -31.21529 -29.73825 -27.69294 -25.61042 -24.45681 -23.67198 -22.74763 -22.22687 -21.43039 -21.29908 -20.86357 -20.23283 -19.45077 -17.88910 -17.43010 -17.33252 -17.24047 -16.96944 -16.56696 -16.02092 -15.89095 -15.69945 -15.48895 -15.11330 -14.97369 -14.79652 -14.38636 -14.29214 -14.13161 -13.97251 -13.77588 -13.56247 -13.43226 -13.15948 -13.05212 -12.92502 -12.41600 -12.39632 -12.32354 -12.05732 -11.97155 -11.52261 -11.48717 -11.34844 -11.22746 -11.05435 -10.42345 -10.24877 -10.24811 -9.64405 -9.28736 -8.41306 -6.02385 0.01950 1.29869 1.35985 1.42614 1.44536 1.64059 1.95769 2.07988 2.18148 2.23088 2.73536 3.14955 3.38460 3.63423 3.72206 3.77397 3.95142 4.11910 4.12183 4.16809 4.22239 4.24519 4.40185 4.43869 4.46886 4.54033 4.57455 4.61922 4.72375 4.84625 4.90342 4.95743 5.02818 5.09246 5.19885 5.24276 5.27588 5.32656 5.39163 5.48860 5.53996 5.83285 5.92373 6.13058 6.42054 6.45913 6.60144 6.88075 6.99854 7.39792 7.96667 8.76381 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028190 B = 0.001727 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.011752 B =16207.398580 C =16584.958575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.230 1.230 7 C -0.330 4.330 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.615 6.615 12 C 0.063 3.937 13 N -0.686 5.686 14 C 0.090 3.910 15 C -0.114 4.114 16 C -0.109 4.109 17 C 0.145 3.855 18 N -0.701 5.701 19 C 0.599 3.401 20 O -0.562 6.562 21 C -0.109 4.109 22 C -0.130 4.130 23 C -0.237 4.237 24 C 0.013 3.987 25 O -0.168 6.168 26 C -0.118 4.118 27 C -0.103 4.103 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.347 0.653 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.417 0.583 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.256 0.744 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.468 -5.528 2.397 39.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.233 5.233 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.069 4.069 13 N -0.319 5.319 14 C -0.019 4.019 15 C -0.153 4.153 16 C -0.147 4.147 17 C 0.041 3.959 18 N -0.351 5.351 19 C 0.387 3.613 20 O -0.443 6.443 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.256 4.256 24 C -0.057 4.057 25 O -0.063 6.063 26 C -0.157 4.157 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.225 0.775 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.166 0.834 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.255 0.745 40 H 0.172 0.828 41 H 0.198 0.802 42 H 0.272 0.728 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 38.216 -6.337 1.336 38.761 hybrid contribution -0.149 1.022 0.572 1.181 sum 38.068 -5.315 1.909 38.484 Atomic orbital electron populations 1.69804 1.08160 1.29254 1.50278 1.26123 0.96475 1.02732 0.96021 0.85359 0.79533 0.76674 0.79908 1.18298 1.19925 1.15316 1.19017 0.81571 0.94939 1.50445 0.92756 1.42035 1.05787 1.07623 1.67838 1.21036 0.91081 0.83273 0.81031 1.90544 1.71443 1.32828 1.55092 1.21664 0.89326 0.92164 1.03738 1.60027 1.08285 1.11905 1.51706 1.21644 0.85581 0.98357 0.96312 1.21614 0.95299 0.96796 1.01572 1.21681 0.94776 1.04328 0.93960 1.21072 0.78115 0.98275 0.98410 1.45867 1.07695 1.65603 1.15913 1.16796 0.83983 0.77059 0.83483 1.90885 1.67519 1.51044 1.34881 1.21832 0.90989 1.13392 0.89837 1.22265 0.93651 0.99546 0.99663 1.22222 0.97801 1.08139 0.97401 1.25385 0.84407 0.98796 0.97096 1.84048 1.17645 1.66485 1.38149 1.21823 0.95253 0.97668 1.00944 1.21466 0.94054 1.02082 0.96615 0.91141 0.77474 0.90338 0.87368 0.83361 0.91821 0.91942 0.90126 0.88993 0.89728 0.91271 0.74544 0.82832 0.80201 0.72823 0.93055 0.89910 0.92948 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.96 21.66 0.30 -56.51 16 2 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.97 38.96 27.74 68.60 1.90 40.86 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 7 C -0.33 -19.62 10.16 84.04 0.85 -18.76 16 8 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 9 N -0.59 -28.17 5.09 -306.99 -1.56 -29.74 16 10 C 0.45 20.46 7.82 87.65 0.69 21.15 16 11 O -0.61 -34.63 15.78 -3.08 -0.05 -34.68 16 12 C 0.06 1.94 5.96 85.56 0.51 2.45 16 13 N -0.69 -20.01 5.93 -495.58 -2.94 -22.95 16 14 C 0.09 1.82 2.49 44.92 0.11 1.93 16 15 C -0.11 -1.89 5.19 30.60 0.16 -1.73 16 16 C -0.11 -1.29 5.39 30.59 0.16 -1.12 16 17 C 0.15 2.41 2.45 44.99 0.11 2.52 16 18 N -0.70 -10.51 5.07 -446.52 -2.27 -12.78 16 19 C 0.60 12.59 7.75 86.44 0.67 13.26 16 20 O -0.56 -16.38 16.53 -4.35 -0.07 -16.45 16 21 C -0.11 -1.87 7.13 24.07 0.17 -1.70 16 22 C -0.13 -2.05 10.62 22.39 0.24 -1.81 16 23 C -0.24 -2.09 10.88 22.07 0.24 -1.85 16 24 C 0.01 0.07 12.08 67.10 0.81 0.88 16 25 O -0.17 -2.00 10.40 -4.98 -0.05 -2.05 16 26 C -0.12 -2.11 5.50 30.61 0.17 -1.94 16 27 C -0.10 -2.22 5.43 30.61 0.17 -2.06 16 28 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 30 H 0.08 1.91 8.06 -2.38 -0.02 1.89 16 31 H 0.11 2.90 7.44 -2.38 -0.02 2.88 16 32 H 0.35 10.62 8.05 -89.70 -0.72 9.90 16 33 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.19 8.12 -2.39 -0.02 1.18 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 39 H 0.42 3.92 8.36 -92.71 -0.77 3.14 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.26 -1.06 8.06 -2.91 -0.02 -1.09 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 Total: -1.00 -85.18 382.91 -0.27 -85.44 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -1.06 Total: 38.00 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.53 Total: 10.85 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.47 Total: -121.97 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.17 Total: -53.18 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.90 Total: 40.86 kcal Total: -85.18 -0.27 -85.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662091834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.568 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds