Wall clock time and date at job start Tue Mar 31 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48494 * 109.47238 * 240.00267 * 3 2 1 5 5 H 1.48497 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46647 * 120.00233 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21608 * 120.00060 * 0.02562 * 19 18 17 21 21 C 1.47485 * 120.00382 * 179.97438 * 19 18 17 22 22 C 1.37809 * 126.77359 * 359.68518 * 21 19 18 23 23 O 1.33498 * 108.34622 * 179.89192 * 22 21 19 24 24 C 1.34880 * 109.88564 * 0.38072 * 23 22 21 25 25 C 1.46771 * 125.65472 * 179.79570 * 24 23 22 26 26 N 1.34776 * 119.99848 * 359.96526 * 25 24 23 27 27 O 1.21677 * 120.00126 * 179.97438 * 25 24 23 28 28 C 1.36058 * 108.69238 * 359.76600 * 24 23 22 29 29 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 31 31 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 32 32 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 33 33 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 34 34 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 35 35 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 36 36 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 37 37 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 38 38 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 39 39 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 40 40 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 41 41 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 42 42 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 43 43 H 1.08006 * 125.82382 * 0.02562 * 22 21 19 44 44 H 0.96999 * 120.00346 * 359.97438 * 26 25 24 45 45 H 0.97001 * 119.99946 * 179.97438 * 26 25 24 46 46 H 1.08005 * 126.68687 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6284 5.6440 21 6 5.7972 -7.7851 5.0512 22 6 5.8607 -8.8674 4.2004 23 8 6.5715 -9.8282 4.7952 24 6 6.9711 -9.4148 6.0153 25 6 7.7685 -10.1991 6.9657 26 7 8.1632 -11.4473 6.6451 27 8 8.0730 -9.7226 8.0431 28 6 6.5131 -8.1499 6.2187 29 1 -0.4850 0.8400 0.0004 30 1 -0.7062 -2.3831 0.5925 31 1 -0.4092 -1.8689 -1.0964 32 1 -1.2604 -4.3898 -0.6103 33 1 0.0383 -4.1244 -1.8213 34 1 1.1341 -5.6561 -0.3157 35 1 0.3125 -4.9628 1.1207 36 1 1.6081 -3.6120 2.4341 37 1 3.1411 -2.9063 1.8679 38 1 3.9144 -5.2131 1.2398 39 1 2.4200 -5.8699 1.9498 40 1 4.5150 -4.2136 3.4280 41 1 3.0208 -4.8704 4.1382 42 1 4.4566 -6.9976 2.9583 43 1 5.4137 -8.9271 3.2191 44 1 7.9201 -11.8274 5.7864 45 1 8.6905 -11.9655 7.2730 46 1 6.6658 -7.5420 7.0983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663092586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:26 Heat of formation + Delta-G solvation = -48.667145 kcal Electronic energy + Delta-G solvation = -27494.374059 eV Core-core repulsion = 23385.809959 eV Total energy + Delta-G solvation = -4108.564100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.34287 -39.78298 -39.54655 -37.85066 -35.60144 -34.45278 -33.65188 -32.96323 -32.18762 -30.58399 -29.38227 -28.09805 -25.19540 -24.40603 -24.28763 -23.12601 -21.59384 -21.41337 -20.27451 -20.09859 -19.26667 -19.05297 -17.64404 -17.05484 -16.92201 -16.76529 -16.35459 -15.93271 -15.67289 -15.06673 -14.93110 -14.81967 -14.39713 -14.25675 -13.89300 -13.68782 -13.64037 -13.19966 -12.88977 -12.35069 -12.05855 -11.93133 -11.73596 -11.47921 -11.03423 -11.03260 -10.81066 -10.74486 -10.59157 -10.52623 -10.37499 -10.27171 -10.09395 -9.99790 -9.77412 -9.61992 -9.61778 -9.37836 -9.18122 -8.55421 -6.75345 -5.72561 -3.07742 0.40720 1.14750 1.98996 2.56883 2.76249 3.06891 3.07679 3.41322 3.46315 3.46789 3.99411 4.10455 4.44249 4.50646 4.88909 4.96849 5.04256 5.14574 5.19918 5.35333 5.45031 5.58796 5.59906 5.64995 5.72508 5.84180 5.93629 5.96645 6.00680 6.08631 6.17057 6.23983 6.31796 6.33966 6.41957 6.56372 6.68097 6.69816 6.72169 6.95777 7.17007 7.27222 7.53922 7.56118 7.64988 7.82068 7.99044 8.31786 9.22680 9.84323 10.53529 11.39742 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.264648 B =15616.728724 C =16572.720089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.163 3.837 14 H 0.030 0.970 15 C -0.123 4.123 16 C -0.127 4.127 17 C 0.118 3.882 18 N -0.723 5.723 19 C 0.581 3.419 20 O -0.529 6.529 21 C -0.233 4.233 22 C 0.047 3.953 23 O -0.153 6.153 24 C -0.093 4.093 25 C 0.612 3.388 26 N -0.843 5.843 27 O -0.517 6.517 28 C -0.059 4.059 29 H 0.253 0.747 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.396 0.604 43 H 0.223 0.777 44 H 0.407 0.593 45 H 0.411 0.589 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.279 -25.884 5.831 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.165 4.165 17 C -0.005 4.005 18 N -0.374 5.374 19 C 0.368 3.632 20 O -0.406 6.406 21 C -0.238 4.238 22 C -0.026 4.026 23 O -0.047 6.047 24 C -0.144 4.144 25 C 0.396 3.604 26 N -0.407 5.407 27 O -0.394 6.394 28 C -0.080 4.080 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.239 0.761 44 H 0.236 0.764 45 H 0.242 0.758 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.403 -24.806 6.977 28.179 hybrid contribution 0.425 0.317 -0.504 0.731 sum 11.828 -24.490 6.474 27.956 Atomic orbital electron populations 1.69928 1.04977 1.25229 1.56334 1.24899 0.95660 0.97762 1.01861 0.86259 0.78577 0.83336 0.77956 1.21179 1.21636 1.21061 1.18906 0.90275 0.82352 1.44064 0.90881 1.44534 1.06174 1.01323 1.79991 1.21403 0.85220 0.89981 0.98600 1.23013 0.97505 0.99859 0.98556 1.22588 0.97192 0.97090 0.99327 1.20922 0.93890 0.87039 0.92654 0.95199 1.22040 0.99915 0.94587 0.99756 1.21842 0.99772 1.00387 0.94530 1.21577 0.96516 0.84329 0.98039 1.45932 1.54846 1.18957 1.17678 1.17214 0.78362 0.85480 0.82178 1.90841 1.60513 1.44325 1.44914 1.20817 1.08711 0.97023 0.97242 1.25134 0.93553 0.85505 0.98366 1.83895 1.54052 1.40429 1.26340 1.21809 1.09267 0.96855 0.86511 1.16471 0.78163 0.81233 0.84498 1.43670 1.57707 1.16093 1.23227 1.90969 1.56040 1.70425 1.21989 1.21942 0.93934 0.93435 0.98723 0.93684 0.95834 0.91326 0.92584 0.92515 0.92694 0.92044 0.92191 0.91540 0.91698 0.91683 0.91061 0.91145 0.76982 0.76115 0.76366 0.75762 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.58 55.49 0.59 -26.20 16 2 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.19 9.71 -15.06 -0.15 -6.33 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.60 -14.69 3.13 -162.58 -0.51 -15.20 16 10 C 0.17 4.13 5.41 -2.53 -0.01 4.11 16 11 C -0.15 -2.76 7.08 -24.59 -0.17 -2.93 16 12 C -0.12 -2.02 5.71 -24.90 -0.14 -2.16 16 13 C 0.16 3.12 3.16 -66.96 -0.21 2.91 16 14 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.12 -2.08 4.71 -26.73 -0.13 -2.21 16 16 C -0.13 -1.50 5.10 -26.73 -0.14 -1.64 16 17 C 0.12 1.43 5.68 -4.03 -0.02 1.41 16 18 N -0.72 -6.97 5.55 -61.36 -0.34 -7.31 16 19 C 0.58 7.01 7.82 -12.50 -0.10 6.91 16 20 O -0.53 -8.85 16.94 5.27 0.09 -8.76 16 21 C -0.23 -2.16 6.16 -104.95 -0.65 -2.81 16 22 C 0.05 0.25 11.64 30.58 0.36 0.61 16 23 O -0.15 -0.93 10.33 6.20 0.06 -0.86 16 24 C -0.09 -0.78 7.09 -36.92 -0.26 -1.04 16 25 C 0.61 5.14 8.06 -12.81 -0.10 5.04 16 26 N -0.84 -3.32 8.87 30.28 0.27 -3.05 16 27 O -0.52 -6.36 17.68 5.21 0.09 -6.27 16 28 C -0.06 -0.60 10.41 -39.03 -0.41 -1.01 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.07 1.83 6.93 -51.93 -0.36 1.47 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.96 7.76 -51.93 -0.40 0.55 16 36 H 0.06 1.09 8.02 -51.93 -0.42 0.68 16 37 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 2.30 7.42 -40.82 -0.30 2.00 16 43 H 0.22 0.15 7.46 -52.48 -0.39 -0.24 16 44 H 0.41 0.64 8.57 -40.82 -0.35 0.29 16 45 H 0.41 0.99 8.93 -40.82 -0.36 0.63 16 46 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -36.36 386.99 -7.91 -44.27 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.74 Total: -0.08 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.23 Total: 0.62 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.01 Total: -51.77 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.25 Total: -15.89 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.36 -7.91 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.399 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds