Wall clock time and date at job start Tue Mar 31 2020 19:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48494 * 109.47238 * 240.00267 * 3 2 1 5 5 H 1.48497 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46647 * 120.00233 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21608 * 120.00060 * 0.02562 * 19 18 17 21 21 C 1.47485 * 120.00382 * 179.97438 * 19 18 17 22 22 C 1.37809 * 126.77359 * 359.68518 * 21 19 18 23 23 O 1.33498 * 108.34622 * 179.89192 * 22 21 19 24 24 C 1.34880 * 109.88564 * 0.38072 * 23 22 21 25 25 C 1.46771 * 125.65472 * 179.79570 * 24 23 22 26 26 N 1.34776 * 119.99848 * 359.96526 * 25 24 23 27 27 O 1.21677 * 120.00126 * 179.97438 * 25 24 23 28 28 C 1.36058 * 108.69238 * 359.76600 * 24 23 22 29 29 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 31 31 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 32 32 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 33 33 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 34 34 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 35 35 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 36 36 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 37 37 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 38 38 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 39 39 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 40 40 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 41 41 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 42 42 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 43 43 H 1.08006 * 125.82382 * 0.02562 * 22 21 19 44 44 H 0.96999 * 120.00346 * 359.97438 * 26 25 24 45 45 H 0.97001 * 119.99946 * 179.97438 * 26 25 24 46 46 H 1.08005 * 126.68687 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6284 5.6440 21 6 5.7972 -7.7851 5.0512 22 6 5.8607 -8.8674 4.2004 23 8 6.5715 -9.8282 4.7952 24 6 6.9711 -9.4148 6.0153 25 6 7.7685 -10.1991 6.9657 26 7 8.1632 -11.4473 6.6451 27 8 8.0730 -9.7226 8.0431 28 6 6.5131 -8.1499 6.2187 29 1 -0.4850 0.8400 0.0004 30 1 -0.7062 -2.3831 0.5925 31 1 -0.4092 -1.8689 -1.0964 32 1 -1.2604 -4.3898 -0.6103 33 1 0.0383 -4.1244 -1.8213 34 1 1.1341 -5.6561 -0.3157 35 1 0.3125 -4.9628 1.1207 36 1 1.6081 -3.6120 2.4341 37 1 3.1411 -2.9063 1.8679 38 1 3.9144 -5.2131 1.2398 39 1 2.4200 -5.8699 1.9498 40 1 4.5150 -4.2136 3.4280 41 1 3.0208 -4.8704 4.1382 42 1 4.4566 -6.9976 2.9583 43 1 5.4137 -8.9271 3.2191 44 1 7.9201 -11.8274 5.7864 45 1 8.6905 -11.9655 7.2730 46 1 6.6658 -7.5420 7.0983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663092586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:25 Heat of formation + Delta-G solvation = -77.873883 kcal Electronic energy + Delta-G solvation = -27495.640559 eV Core-core repulsion = 23385.809959 eV Total energy + Delta-G solvation = -4109.830599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.93479 -40.64142 -40.30535 -39.42462 -36.71765 -35.04031 -34.70418 -34.29033 -33.58227 -31.37128 -31.11581 -29.40630 -26.68614 -26.00225 -24.86143 -24.16774 -22.68160 -22.10235 -21.84054 -21.10057 -20.61217 -19.81083 -18.68595 -18.13965 -17.64042 -17.50347 -17.18309 -16.93315 -16.86073 -16.61387 -16.04426 -15.70076 -15.62143 -15.43534 -15.32668 -14.71019 -14.33725 -14.30896 -13.91759 -13.80612 -13.66478 -13.52151 -13.10956 -12.96738 -12.70651 -12.64897 -12.21850 -12.02978 -11.79630 -11.75771 -11.66582 -11.52557 -11.30064 -11.26683 -11.23780 -11.08021 -10.89536 -10.62807 -10.21650 -9.87024 -8.74910 -7.83995 -5.19181 -0.15251 0.41345 1.42460 1.44580 1.47308 1.53015 1.90898 1.99847 2.24731 2.49779 2.51580 3.34072 3.36222 3.65364 3.73053 3.87420 3.98398 4.05143 4.19579 4.26049 4.28860 4.36003 4.41436 4.47195 4.65968 4.71955 4.82586 4.86341 4.90087 4.91606 5.03512 5.08310 5.17510 5.27488 5.34234 5.40941 5.43265 5.52636 5.56706 5.70780 5.73082 5.75382 5.82733 6.25525 6.29974 6.51582 7.07965 7.14888 7.17116 7.85361 8.52089 9.27344 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.001793 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.264648 B =15616.728724 C =16572.720089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.115 4.115 16 C -0.106 4.106 17 C 0.124 3.876 18 N -0.702 5.702 19 C 0.581 3.419 20 O -0.590 6.590 21 C -0.268 4.268 22 C 0.100 3.900 23 O -0.136 6.136 24 C -0.092 4.092 25 C 0.609 3.391 26 N -0.816 5.816 27 O -0.568 6.568 28 C -0.086 4.086 29 H 0.245 0.755 30 H -0.011 1.011 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.420 0.580 43 H 0.280 0.720 44 H 0.422 0.578 45 H 0.420 0.580 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.223 -30.132 3.716 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.046 3.954 14 H 0.056 0.944 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.000 4.000 18 N -0.354 5.354 19 C 0.369 3.631 20 O -0.472 6.472 21 C -0.272 4.272 22 C 0.027 3.973 23 O -0.029 6.029 24 C -0.143 4.143 25 C 0.394 3.606 26 N -0.380 5.380 27 O -0.449 6.449 28 C -0.108 4.108 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.259 0.741 43 H 0.295 0.705 44 H 0.254 0.746 45 H 0.254 0.746 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.382 -29.180 4.798 32.059 hybrid contribution 0.148 1.556 0.091 1.566 sum 12.531 -27.623 4.889 30.724 Atomic orbital electron populations 1.70143 1.06273 1.25138 1.58289 1.25665 0.96483 1.00934 1.02913 0.85290 0.77278 0.79482 0.78156 1.20169 1.22267 1.20721 1.19252 0.90690 0.83785 1.42190 0.90610 1.44860 1.06553 1.02657 1.80329 1.21206 0.84729 0.93281 0.95932 1.22881 0.99809 0.95613 0.99324 1.22591 0.95063 0.97399 0.99714 1.21244 0.95270 0.85324 0.93600 0.94365 1.21845 0.98912 0.96771 0.97986 1.21637 1.00464 0.97913 0.94405 1.21306 0.95686 0.84997 0.97994 1.45607 1.53593 1.18589 1.17595 1.17606 0.77838 0.85784 0.81830 1.90813 1.62854 1.46535 1.46986 1.20548 1.10871 0.97348 0.98452 1.26085 0.89771 0.82921 0.98539 1.83946 1.53633 1.40134 1.25173 1.21564 1.09351 0.96115 0.87313 1.16551 0.78059 0.82179 0.83857 1.43485 1.56163 1.14441 1.23945 1.90946 1.58150 1.71734 1.24025 1.21898 0.95483 0.94470 0.98927 0.94588 0.99258 0.95394 0.90216 0.91734 0.88086 0.91078 0.94177 0.94699 0.89512 0.88598 0.93354 0.92892 0.74130 0.70460 0.74555 0.74617 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 10.58 21.65 0.23 -57.69 16 2 C -0.07 -3.85 5.47 84.86 0.46 -3.39 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.23 -12.75 9.71 84.03 0.82 -11.93 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.62 -30.82 3.13 -668.29 -2.09 -32.91 16 10 C 0.17 8.47 5.41 86.86 0.47 8.94 16 11 C -0.14 -4.71 7.08 31.98 0.23 -4.48 16 12 C -0.11 -3.11 5.71 31.78 0.18 -2.93 16 13 C 0.15 5.51 3.16 45.34 0.14 5.65 16 14 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.11 -3.78 4.71 30.59 0.14 -3.64 16 16 C -0.11 -2.13 5.10 30.60 0.16 -1.98 16 17 C 0.12 2.84 5.68 86.38 0.49 3.33 16 18 N -0.70 -11.54 5.55 -466.29 -2.59 -14.13 16 19 C 0.58 13.56 7.82 86.68 0.68 14.23 16 20 O -0.59 -20.74 16.94 -4.06 -0.07 -20.80 16 21 C -0.27 -4.49 6.16 -20.08 -0.12 -4.61 16 22 C 0.10 0.57 11.64 67.72 0.79 1.36 16 23 O -0.14 -1.09 10.33 -0.73 -0.01 -1.10 16 24 C -0.09 -1.41 7.09 24.00 0.17 -1.24 16 25 C 0.61 9.79 8.06 86.47 0.70 10.48 16 26 N -0.82 -4.66 8.87 -176.33 -1.56 -6.22 16 27 O -0.57 -14.49 17.68 -4.28 -0.08 -14.56 16 28 C -0.09 -1.79 10.41 22.63 0.24 -1.55 16 29 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 30 H -0.01 -0.58 8.06 -2.39 -0.02 -0.60 16 31 H 0.03 1.55 6.93 -2.38 -0.02 1.54 16 32 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 1.91 7.76 -2.39 -0.02 1.89 16 36 H 0.04 1.45 8.02 -2.39 -0.02 1.44 16 37 H 0.03 1.34 7.84 -2.38 -0.02 1.32 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.43 7.65 -2.39 -0.02 1.41 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.42 2.59 7.42 -92.71 -0.69 1.90 16 43 H 0.28 -1.87 7.46 -2.91 -0.02 -1.90 16 44 H 0.42 -0.07 8.57 -92.71 -0.79 -0.87 16 45 H 0.42 1.20 8.93 -92.71 -0.83 0.37 16 46 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -88.85 386.99 0.13 -88.72 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -1.27 Total: 1.84 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.54 Total: 8.25 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -6.01 Total: -110.95 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.15 Total: -36.46 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -88.85 0.13 -88.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.846 kcal (2) G-P(sol) polarization free energy of solvation -88.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds