Wall clock time and date at job start Tue Mar 31 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48503 * 109.47088 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47103 * 30.00108 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99811 * 3 2 1 7 7 C 1.38950 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00099 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99550 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.46908 * 109.46810 * 180.02562 * 12 10 9 14 14 C 1.47900 * 110.99815 * 52.60651 * 13 12 10 15 15 C 1.54002 * 107.05481 * 145.84530 * 14 13 12 16 16 C 1.54591 * 105.14001 * 358.77246 * 15 14 13 17 17 O 1.42901 * 110.87786 * 96.47265 * 16 15 14 18 18 C 1.53004 * 110.72417 * 219.68930 * 16 15 14 19 19 N 1.46505 * 109.46456 * 298.50010 * 18 16 15 20 20 C 1.34779 * 119.99533 * 179.97438 * 19 18 16 21 21 O 1.21616 * 120.00291 * 0.02562 * 20 19 18 22 22 C 1.43201 * 119.99886 * 179.97438 * 20 19 18 23 23 C 9.98896 * 156.94766 * 279.70835 * 11 1 2 24 24 C 9.44565 * 143.03169 * 230.75635 * 13 1 2 25 25 C 1.53005 * 117.49557 * 86.02352 * 24 23 22 26 26 C 1.53001 * 117.49881 * 17.40142 * 24 23 22 27 27 C 1.48531 * 110.99911 * 170.00258 * 13 12 10 28 28 H 0.96993 * 120.00306 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00049 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47177 * 60.00727 * 12 10 9 31 31 H 1.08999 * 109.47091 * 299.99965 * 12 10 9 32 32 H 1.08993 * 109.92347 * 26.48923 * 14 13 12 33 33 H 1.09004 * 109.91575 * 265.19522 * 14 13 12 34 34 H 1.09004 * 110.30355 * 239.85493 * 15 14 13 35 35 H 1.09001 * 110.39033 * 117.73642 * 15 14 13 36 36 H 0.96699 * 113.99398 * 66.40825 * 17 16 15 37 37 H 1.08993 * 109.47009 * 58.49553 * 18 16 15 38 38 H 1.08994 * 109.47111 * 178.50509 * 18 16 15 39 39 H 0.96999 * 120.00452 * 0.02562 * 19 18 16 40 40 H 1.08997 * 115.54662 * 231.72967 * 24 23 22 41 41 H 1.09002 * 117.49986 * 359.97438 * 25 24 23 42 42 H 1.09001 * 117.49565 * 145.01983 * 25 24 23 43 43 H 1.09000 * 117.50003 * 214.97956 * 26 24 23 44 44 H 1.09001 * 117.49714 * 0.02562 * 26 24 23 45 45 H 1.09001 * 110.67185 * 81.83947 * 27 13 12 46 46 H 1.09004 * 110.66470 * 318.71524 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4209 0.0021 12 6 5.5608 -2.3703 0.0021 13 7 6.0505 -3.7554 0.0027 14 6 5.4366 -4.5351 -1.0939 15 6 6.4975 -5.5383 -1.5836 16 6 7.7491 -5.2554 -0.7216 17 8 7.8166 -6.1529 0.3883 18 6 9.0209 -5.3466 -1.5673 19 7 9.1515 -6.7021 -2.1078 20 6 10.2036 -7.0174 -2.8890 21 8 11.0447 -6.1771 -3.1447 22 6 10.3317 -8.3424 -3.4169 23 6 10.4363 -9.4292 -3.8496 24 6 10.5676 -10.7916 -4.3914 25 6 10.4891 -10.9584 -5.9103 26 6 9.3272 -11.4210 -5.0288 27 6 7.5155 -3.8021 -0.2380 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9241 -1.8558 0.8917 31 1 5.9241 -1.8573 -0.8883 32 1 5.1512 -3.8693 -1.9084 33 1 4.5619 -5.0703 -0.7245 34 1 6.7183 -5.3709 -2.6378 35 1 6.1537 -6.5609 -1.4275 36 1 7.9618 -7.0760 0.1393 37 1 8.9633 -4.6321 -2.3883 38 1 9.8872 -5.1180 -0.9466 39 1 8.4805 -7.3722 -1.9042 40 1 11.2431 -11.4510 -3.8465 41 1 10.3398 -10.0593 -6.5083 42 1 11.1132 -11.7277 -6.3650 43 1 9.1869 -12.4946 -4.9036 44 1 8.4141 -10.8260 -5.0473 45 1 8.0633 -3.6109 0.6847 46 1 7.8012 -3.0887 -1.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671993712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:19 Heat of formation + Delta-G solvation = -19.252795 kcal Electronic energy + Delta-G solvation = -27646.145044 eV Core-core repulsion = 23538.856446 eV Total energy + Delta-G solvation = -4107.288598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51950 -39.48908 -38.25520 -38.13179 -35.99038 -34.66453 -33.94965 -33.21215 -31.78935 -31.33046 -29.46566 -27.66788 -25.95836 -24.54123 -23.77810 -23.04323 -22.29666 -21.16470 -20.71231 -19.50557 -19.33577 -18.22596 -17.42727 -17.02112 -16.44115 -16.02944 -15.90666 -15.52859 -15.42917 -15.24961 -14.80514 -14.67246 -14.23790 -13.90659 -13.56651 -13.32443 -13.17452 -13.16292 -12.76105 -12.62816 -12.58948 -12.17824 -12.17265 -11.91217 -11.81881 -11.72461 -11.46774 -11.19715 -11.14773 -10.87450 -10.72630 -10.66232 -10.59891 -10.25977 -10.18298 -9.99115 -9.63355 -9.57225 -8.53528 -8.20656 -8.05320 -6.32852 -3.84362 1.09300 1.64561 2.51427 3.02063 3.05695 3.06532 3.14332 3.32249 3.59971 3.70490 3.80404 3.90137 4.08888 4.14469 4.30060 4.31965 4.40141 4.47427 4.55971 4.77869 4.89246 5.00214 5.08921 5.16897 5.20078 5.21020 5.34259 5.39189 5.44757 5.49721 5.51661 5.62108 5.65571 5.71214 5.81600 5.82977 5.90202 6.11803 6.53361 6.72627 6.87493 7.08981 7.11140 7.40509 7.56267 7.63227 8.12164 8.57714 8.93014 9.40240 9.80195 10.80136 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.001829 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.616559 B =15305.830517 C =15782.739365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.451 3.549 11 O -0.562 6.562 12 C 0.032 3.968 13 N -0.486 5.486 14 C 0.053 3.947 15 C -0.162 4.162 16 C 0.120 3.880 17 O -0.531 6.531 18 C 0.099 3.901 19 N -0.716 5.716 20 C 0.638 3.362 21 O -0.519 6.519 22 C -0.223 4.223 23 C -0.045 4.045 24 C -0.069 4.069 25 C -0.160 4.160 26 C -0.159 4.159 27 C 0.050 3.950 28 H 0.273 0.727 29 H 0.371 0.629 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.368 0.632 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.403 0.597 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.255 -18.083 -8.504 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.236 3.764 11 O -0.444 6.444 12 C -0.100 4.100 13 N -0.211 5.211 14 C -0.075 4.075 15 C -0.201 4.201 16 C 0.078 3.922 17 O -0.336 6.336 18 C -0.025 4.025 19 N -0.368 5.368 20 C 0.424 3.576 21 O -0.396 6.396 22 C -0.225 4.225 23 C -0.047 4.047 24 C -0.087 4.087 25 C -0.197 4.197 26 C -0.195 4.195 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.215 0.785 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.966 -17.666 -7.820 29.253 hybrid contribution 0.546 1.057 -0.979 1.541 sum 22.511 -16.609 -8.799 29.326 Atomic orbital electron populations 1.69617 1.05646 1.27530 1.49256 1.25038 0.95492 0.97988 0.97596 0.86677 0.79860 0.84043 0.78857 1.19672 1.20129 1.19421 1.19424 0.79185 0.96636 1.48126 0.86261 1.42193 1.07555 1.06111 1.66948 1.19598 0.88061 0.84606 0.84097 1.90537 1.69445 1.30632 1.53826 1.22177 0.95536 0.90464 1.01848 1.64631 1.01927 1.10409 1.44083 1.22843 0.97523 0.95165 0.91942 1.23290 0.95818 1.01624 0.99344 1.22278 0.91754 0.92097 0.86077 1.86717 1.95199 1.19834 1.31820 1.22146 0.99081 0.83106 0.98147 1.45742 1.25772 1.14112 1.51202 1.14574 0.81603 0.83290 0.78123 1.90885 1.41078 1.48947 1.58678 1.20520 1.04533 0.93676 1.03812 1.21394 0.96509 0.92385 0.94452 1.18959 1.04332 0.88822 0.96565 1.23132 1.01780 1.04004 0.90766 1.23138 0.92658 1.01778 1.01972 1.23201 0.91177 0.92145 1.01346 0.91594 0.79670 0.88825 0.93143 0.93911 0.87660 0.90821 0.90371 0.78502 0.89807 0.89705 0.76192 0.84454 0.88025 0.87245 0.87195 0.87966 0.88726 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.93 5.09 -10.96 -0.06 -13.98 16 10 C 0.45 10.12 7.36 -10.98 -0.08 10.04 16 11 O -0.56 -14.66 13.37 5.54 0.07 -14.58 16 12 C 0.03 0.53 5.48 -4.97 -0.03 0.50 16 13 N -0.49 -7.79 5.26 -231.89 -1.22 -9.01 16 14 C 0.05 0.83 5.06 -2.75 -0.01 0.82 16 15 C -0.16 -1.77 5.70 -25.37 -0.14 -1.92 16 16 C 0.12 1.22 1.03 -88.76 -0.09 1.13 16 17 O -0.53 -5.74 13.13 -35.23 -0.46 -6.21 16 18 C 0.10 0.89 4.75 -4.04 -0.02 0.87 16 19 N -0.72 -5.82 5.12 -62.76 -0.32 -6.14 16 20 C 0.64 6.95 7.65 -14.33 -0.11 6.84 16 21 O -0.52 -7.59 17.09 5.26 0.09 -7.50 16 22 C -0.22 -2.17 13.62 -38.83 -0.53 -2.70 16 23 C -0.04 -0.36 13.47 -37.11 -0.50 -0.86 16 24 C -0.07 -0.34 6.22 -93.40 -0.58 -0.92 16 25 C -0.16 -0.62 10.21 -26.73 -0.27 -0.89 16 26 C -0.16 -0.58 10.21 -26.73 -0.27 -0.85 16 27 C 0.05 0.60 5.72 -1.90 -0.01 0.59 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 32 H 0.04 0.71 7.59 -51.93 -0.39 0.32 16 33 H 0.11 2.01 6.75 -51.93 -0.35 1.66 16 34 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 35 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.37 2.52 8.05 45.56 0.37 2.89 16 37 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.40 2.34 7.34 -40.82 -0.30 2.04 16 40 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -36.13 389.65 -8.78 -44.91 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.91 Total: 11.94 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.90 Total: 4.96 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.82 Total: -53.97 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.30 Total: -28.29 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.13 -8.78 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671993712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.659 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds