Wall clock time and date at job start Tue Mar 31 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48503 * 109.47088 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47103 * 30.00108 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99811 * 3 2 1 7 7 C 1.38950 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00099 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99550 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.46908 * 109.46810 * 180.02562 * 12 10 9 14 14 C 1.47900 * 110.99815 * 52.60651 * 13 12 10 15 15 C 1.54002 * 107.05481 * 145.84530 * 14 13 12 16 16 C 1.54591 * 105.14001 * 358.77246 * 15 14 13 17 17 O 1.42901 * 110.87786 * 96.47265 * 16 15 14 18 18 C 1.53004 * 110.72417 * 219.68930 * 16 15 14 19 19 N 1.46505 * 109.46456 * 298.50010 * 18 16 15 20 20 C 1.34779 * 119.99533 * 179.97438 * 19 18 16 21 21 O 1.21616 * 120.00291 * 0.02562 * 20 19 18 22 22 C 1.43201 * 119.99886 * 179.97438 * 20 19 18 23 23 C 9.98896 * 156.94766 * 279.70835 * 11 1 2 24 24 C 9.44565 * 143.03169 * 230.75635 * 13 1 2 25 25 C 1.53005 * 117.49557 * 86.02352 * 24 23 22 26 26 C 1.53001 * 117.49881 * 17.40142 * 24 23 22 27 27 C 1.48531 * 110.99911 * 170.00258 * 13 12 10 28 28 H 0.96993 * 120.00306 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00049 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47177 * 60.00727 * 12 10 9 31 31 H 1.08999 * 109.47091 * 299.99965 * 12 10 9 32 32 H 1.08993 * 109.92347 * 26.48923 * 14 13 12 33 33 H 1.09004 * 109.91575 * 265.19522 * 14 13 12 34 34 H 1.09004 * 110.30355 * 239.85493 * 15 14 13 35 35 H 1.09001 * 110.39033 * 117.73642 * 15 14 13 36 36 H 0.96699 * 113.99398 * 66.40825 * 17 16 15 37 37 H 1.08993 * 109.47009 * 58.49553 * 18 16 15 38 38 H 1.08994 * 109.47111 * 178.50509 * 18 16 15 39 39 H 0.96999 * 120.00452 * 0.02562 * 19 18 16 40 40 H 1.08997 * 115.54662 * 231.72967 * 24 23 22 41 41 H 1.09002 * 117.49986 * 359.97438 * 25 24 23 42 42 H 1.09001 * 117.49565 * 145.01983 * 25 24 23 43 43 H 1.09000 * 117.50003 * 214.97956 * 26 24 23 44 44 H 1.09001 * 117.49714 * 0.02562 * 26 24 23 45 45 H 1.09001 * 110.67185 * 81.83947 * 27 13 12 46 46 H 1.09004 * 110.66470 * 318.71524 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4209 0.0021 12 6 5.5608 -2.3703 0.0021 13 7 6.0505 -3.7554 0.0027 14 6 5.4366 -4.5351 -1.0939 15 6 6.4975 -5.5383 -1.5836 16 6 7.7491 -5.2554 -0.7216 17 8 7.8166 -6.1529 0.3883 18 6 9.0209 -5.3466 -1.5673 19 7 9.1515 -6.7021 -2.1078 20 6 10.2036 -7.0174 -2.8890 21 8 11.0447 -6.1771 -3.1447 22 6 10.3317 -8.3424 -3.4169 23 6 10.4363 -9.4292 -3.8496 24 6 10.5676 -10.7916 -4.3914 25 6 10.4891 -10.9584 -5.9103 26 6 9.3272 -11.4210 -5.0288 27 6 7.5155 -3.8021 -0.2380 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9241 -1.8558 0.8917 31 1 5.9241 -1.8573 -0.8883 32 1 5.1512 -3.8693 -1.9084 33 1 4.5619 -5.0703 -0.7245 34 1 6.7183 -5.3709 -2.6378 35 1 6.1537 -6.5609 -1.4275 36 1 7.9618 -7.0760 0.1393 37 1 8.9633 -4.6321 -2.3883 38 1 9.8872 -5.1180 -0.9466 39 1 8.4805 -7.3722 -1.9042 40 1 11.2431 -11.4510 -3.8465 41 1 10.3398 -10.0593 -6.5083 42 1 11.1132 -11.7277 -6.3650 43 1 9.1869 -12.4946 -4.9036 44 1 8.4141 -10.8260 -5.0473 45 1 8.0633 -3.6109 0.6847 46 1 7.8012 -3.0887 -1.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671993712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:18 Heat of formation + Delta-G solvation = -50.476973 kcal Electronic energy + Delta-G solvation = -27647.499026 eV Core-core repulsion = 23538.856446 eV Total energy + Delta-G solvation = -4108.642580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44526 -40.67314 -39.70304 -38.51188 -37.14644 -35.91233 -35.47490 -33.86199 -33.78490 -32.48461 -30.42887 -28.94149 -27.14537 -25.74714 -24.85712 -23.30438 -23.04096 -22.29011 -21.64537 -21.22673 -20.24237 -20.06008 -18.19069 -17.68190 -17.59966 -17.26472 -16.90657 -16.73417 -16.47467 -16.31920 -15.93224 -15.69671 -15.37918 -15.10512 -15.00164 -14.60874 -14.51441 -14.25158 -13.82918 -13.64521 -13.53040 -13.20734 -13.16411 -13.08321 -12.76505 -12.55048 -12.43978 -12.40874 -12.31187 -12.10652 -11.98673 -11.91697 -11.61396 -11.50562 -11.14160 -11.06270 -10.73315 -10.39610 -10.30635 -10.23961 -9.31418 -8.42148 -6.02978 0.37117 1.02930 1.30085 1.34538 1.43951 1.82096 1.93456 2.22220 2.34290 2.64073 2.93044 2.98015 3.08175 3.14203 3.21929 3.48159 3.58190 3.66567 3.82122 3.97817 4.01058 4.11371 4.17816 4.31647 4.35515 4.40775 4.48241 4.59869 4.65016 4.70139 4.76312 4.80151 4.82580 4.96326 5.02367 5.07744 5.08252 5.20182 5.23908 5.51704 5.86604 5.91934 6.02023 6.08922 6.18738 6.58400 6.74973 6.87186 6.88774 7.38000 7.94772 8.75354 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.001829 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.616559 B =15305.830517 C =15782.739365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.328 4.328 8 H 0.055 0.945 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.606 6.606 12 C 0.042 3.958 13 N -0.511 5.511 14 C 0.054 3.946 15 C -0.151 4.151 16 C 0.134 3.866 17 O -0.549 6.549 18 C 0.108 3.892 19 N -0.700 5.700 20 C 0.640 3.360 21 O -0.565 6.565 22 C -0.266 4.266 23 C -0.022 4.022 24 C -0.087 4.087 25 C -0.158 4.158 26 C -0.150 4.150 27 C 0.047 3.953 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.385 0.615 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.415 0.585 40 H 0.159 0.841 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.618 -17.888 -9.084 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.457 4.457 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.490 6.490 12 C -0.089 4.089 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.190 4.190 16 C 0.091 3.909 17 O -0.356 6.356 18 C -0.016 4.016 19 N -0.352 5.352 20 C 0.428 3.572 21 O -0.445 6.445 22 C -0.269 4.269 23 C -0.025 4.025 24 C -0.105 4.105 25 C -0.195 4.195 26 C -0.187 4.187 27 C -0.081 4.081 28 H 0.089 0.911 29 H 0.225 0.775 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.176 0.824 41 H 0.109 0.891 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.333 -17.514 -8.387 31.919 hybrid contribution -0.584 0.765 -0.801 1.252 sum 24.749 -16.749 -9.187 31.264 Atomic orbital electron populations 1.69799 1.08120 1.29241 1.50281 1.26102 0.96458 1.02676 0.96060 0.85379 0.79535 0.76784 0.79925 1.18140 1.20034 1.15465 1.18993 0.81426 0.94925 1.50345 0.92642 1.42018 1.05842 1.07521 1.67816 1.20836 0.90778 0.83446 0.81317 1.90538 1.71322 1.32325 1.54838 1.22127 0.90316 0.91841 1.04619 1.64551 1.04477 1.09960 1.44630 1.22644 0.97729 0.95709 0.91350 1.23214 0.94700 1.00829 1.00241 1.22083 0.91670 0.91352 0.85748 1.86683 1.95229 1.21252 1.32415 1.22018 0.98183 0.83402 0.97950 1.45595 1.25294 1.14230 1.50064 1.14699 0.81368 0.83339 0.77835 1.90852 1.42766 1.50288 1.60575 1.20487 1.06660 0.94106 1.05664 1.22124 0.94641 0.92859 0.92828 1.19317 1.06039 0.87568 0.97537 1.23240 1.02211 1.04165 0.89840 1.23243 0.91877 1.02781 1.00784 1.23337 0.88277 0.93780 1.02684 0.91148 0.77502 0.86188 0.89791 0.95391 0.92180 0.89153 0.89217 0.76567 0.89498 0.89649 0.74720 0.82355 0.89113 0.85183 0.85097 0.88667 0.88033 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.96 21.66 0.30 -56.12 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.96 38.84 27.74 68.60 1.90 40.74 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 8 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 9 N -0.59 -27.93 5.09 -306.98 -1.56 -29.49 16 10 C 0.45 20.35 7.36 87.65 0.64 20.99 16 11 O -0.61 -33.31 13.37 -3.08 -0.04 -33.36 16 12 C 0.04 1.32 5.48 85.55 0.47 1.78 16 13 N -0.51 -15.68 5.26 -887.56 -4.67 -20.36 16 14 C 0.05 1.70 5.06 86.45 0.44 2.14 16 15 C -0.15 -3.09 5.70 31.47 0.18 -2.91 16 16 C 0.13 2.42 1.03 -9.59 -0.01 2.41 16 17 O -0.55 -10.74 13.13 -148.98 -1.96 -12.69 16 18 C 0.11 1.69 4.75 86.38 0.41 2.10 16 19 N -0.70 -10.24 5.12 -470.73 -2.41 -12.65 16 20 C 0.64 13.54 7.65 85.49 0.65 14.19 16 21 O -0.56 -16.42 17.09 -4.08 -0.07 -16.49 16 22 C -0.27 -5.03 13.62 30.01 0.41 -4.63 16 23 C -0.02 -0.33 13.47 31.12 0.42 0.09 16 24 C -0.09 -0.67 6.22 -12.59 -0.08 -0.75 16 25 C -0.16 -0.89 10.21 30.60 0.31 -0.57 16 26 C -0.15 -0.73 10.21 30.60 0.31 -0.42 16 27 C 0.05 0.99 5.72 86.65 0.50 1.48 16 28 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 30 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 32 H 0.03 0.94 7.59 -2.39 -0.02 0.92 16 33 H 0.06 2.43 6.75 -2.38 -0.02 2.42 16 34 H 0.09 1.57 7.85 -2.38 -0.02 1.55 16 35 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 36 H 0.38 4.44 8.05 -74.06 -0.60 3.84 16 37 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 4.02 7.34 -92.71 -0.68 3.34 16 40 H 0.16 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 1.40 7.75 -2.39 -0.02 1.38 16 Total: -1.00 -86.16 389.65 -3.35 -89.51 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.83 Total: 33.71 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.98 Total: 17.19 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -8.34 Total: -118.62 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: -2.07 Total: -62.54 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -86.16 -3.35 -89.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671993712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -86.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds