Wall clock time and date at job start Tue Mar 31 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.47233 * 60.00180 * 3 2 1 7 7 C 1.38815 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47337 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.55225 * 59.87631 * 11 10 9 13 13 C 1.53296 * 109.51424 * 180.02562 * 11 10 9 14 14 N 1.47148 * 108.38343 * 172.22949 * 13 11 10 15 15 C 1.34777 * 120.98121 * 129.48933 * 14 13 11 16 16 O 1.21280 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00268 * 179.97438 * 15 14 13 18 18 O 1.42891 * 109.47541 * 180.02562 * 17 15 14 19 19 C 1.42904 * 114.00406 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47326 * 179.97438 * 19 18 17 21 21 C 1.38669 * 120.41640 * 269.72117 * 20 19 18 22 22 C 1.38628 * 118.42216 * 179.78082 * 21 20 19 23 23 C 1.38232 * 119.15792 * 0.51846 * 22 21 20 24 24 N 1.31850 * 120.76188 * 359.72170 * 23 22 21 25 25 C 1.31883 * 121.72778 * 359.97438 * 24 23 22 26 26 C 1.47151 * 118.03873 * 309.46325 * 14 13 11 27 27 C 1.53294 * 108.38428 * 50.53625 * 26 14 13 28 28 O 1.42957 * 109.51438 * 299.75029 * 11 10 9 29 29 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00142 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46513 * 60.00537 * 10 9 7 32 32 H 1.08996 * 109.47299 * 300.00768 * 10 9 7 33 33 H 1.08996 * 109.67842 * 291.95153 * 13 11 10 34 34 H 1.08999 * 109.67990 * 52.46694 * 13 11 10 35 35 H 1.09001 * 109.46914 * 300.00360 * 17 15 14 36 36 H 1.09001 * 109.46868 * 59.99487 * 17 15 14 37 37 H 1.08998 * 109.47026 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46765 * 59.99878 * 19 18 17 39 39 H 1.08009 * 120.79341 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.42194 * 180.25791 * 22 21 20 41 41 H 1.07995 * 119.61846 * 179.74341 * 23 22 21 42 42 H 1.08006 * 119.62247 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.68629 * 170.26248 * 26 14 13 44 44 H 1.08998 * 109.67969 * 290.77799 * 26 14 13 45 45 H 1.09005 * 109.50976 * 67.61995 * 27 26 14 46 46 H 1.08996 * 109.51690 * 187.77283 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4345 -4.7614 -0.8903 13 6 1.8292 -6.1479 -0.0026 14 7 0.8622 -7.2409 0.1858 15 6 0.8489 -8.3056 -0.6405 16 8 1.6414 -8.3726 -1.5560 17 6 -0.1508 -9.4129 -0.4268 18 8 0.0342 -10.4205 -1.4228 19 6 -0.8685 -11.5226 -1.3096 20 6 -0.5852 -12.5186 -2.4045 21 6 -1.2346 -12.4228 -3.6259 22 6 -0.9392 -13.3583 -4.6054 23 6 -0.0217 -14.3549 -4.3301 24 7 0.5730 -14.4181 -3.1551 25 6 0.3210 -13.5419 -2.2021 26 6 -0.0895 -7.1375 1.3034 27 6 -0.7615 -5.7611 1.2403 28 8 0.2456 -4.7489 1.1682 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6852 -3.7150 0.8879 32 1 2.6840 -3.7142 -0.8921 33 1 2.3448 -6.2740 -0.9546 34 1 2.5542 -6.1540 0.8112 35 1 -0.0048 -9.8484 0.5617 36 1 -1.1608 -9.0097 -0.5004 37 1 -0.7372 -12.0015 -0.3393 38 1 -1.8935 -11.1635 -1.4018 39 1 -1.9506 -11.6356 -3.8113 40 1 -1.4230 -13.3116 -5.5699 41 1 0.2108 -15.0900 -5.0863 42 1 0.8282 -13.6255 -1.2522 43 1 -0.8444 -7.9189 1.2163 44 1 0.4418 -7.2442 2.2491 45 1 -1.3971 -5.7064 0.3564 46 1 -1.3663 -5.6099 2.1344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673332177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:13 Heat of formation + Delta-G solvation = -58.677116 kcal Electronic energy + Delta-G solvation = -27845.706247 eV Core-core repulsion = 23736.708083 eV Total energy + Delta-G solvation = -4108.998165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67208 -40.41714 -38.70590 -37.64987 -35.11739 -34.41310 -33.40254 -32.33362 -32.14762 -30.33167 -29.21593 -27.79792 -26.55810 -25.09663 -24.00306 -23.55030 -22.47921 -22.44997 -20.91890 -19.47524 -17.92691 -17.44076 -17.26237 -17.13244 -16.94466 -16.35316 -16.28051 -15.99995 -15.60509 -15.12954 -15.01073 -14.50796 -14.49485 -14.21306 -14.12948 -13.65451 -13.48295 -13.46109 -13.16424 -12.83405 -12.64327 -12.62876 -12.35561 -12.19073 -11.82799 -11.62790 -11.04962 -10.90684 -10.80922 -10.49813 -10.28551 -10.25642 -10.07730 -9.92756 -9.88441 -9.84468 -9.67987 -9.49889 -8.86903 -8.61648 -6.88863 -5.72889 -3.01418 0.58114 0.85237 2.36979 2.40577 3.22422 3.45857 3.51300 3.53683 3.63860 3.88770 4.01475 4.17541 4.30108 4.41588 4.51884 4.55110 4.56495 4.59890 4.67551 4.72895 4.80261 4.83207 4.90946 5.00039 5.08485 5.17048 5.26293 5.32509 5.38821 5.59982 5.61597 5.64367 5.66273 5.78771 5.83797 5.92546 6.18756 6.24049 6.26861 6.54087 6.56186 6.68427 7.12925 7.41731 7.53870 7.72890 7.95365 8.45296 9.57230 10.14218 10.50300 11.49992 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.001764 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.220190 B =15871.784800 C =16215.825887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.087 3.913 14 N -0.613 5.613 15 C 0.516 3.484 16 O -0.517 6.517 17 C 0.046 3.954 18 O -0.356 6.356 19 C 0.106 3.894 20 C -0.142 4.142 21 C -0.052 4.052 22 C -0.176 4.176 23 C 0.103 3.897 24 N -0.488 5.488 25 C 0.122 3.878 26 C 0.070 3.930 27 C 0.045 3.955 28 O -0.355 6.355 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 -29.466 -0.979 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.035 4.035 14 N -0.350 5.350 15 C 0.303 3.697 16 O -0.391 6.391 17 C -0.034 4.034 18 O -0.275 6.275 19 C 0.029 3.971 20 C -0.144 4.144 21 C -0.078 4.078 22 C -0.195 4.195 23 C -0.053 4.053 24 N -0.196 5.196 25 C -0.035 4.035 26 C -0.053 4.053 27 C -0.033 4.033 28 O -0.273 6.273 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.532 -29.926 -1.341 30.463 hybrid contribution -0.874 1.421 -0.062 1.670 sum -6.406 -28.505 -1.403 29.250 Atomic orbital electron populations 1.69687 1.05116 1.25428 1.57815 1.24745 0.95536 0.97683 1.03068 0.86102 0.78786 0.84081 0.77132 1.20538 1.21914 1.21888 1.19284 0.91075 0.84080 1.42539 0.91059 1.42211 1.06052 0.99445 1.89323 1.20632 0.92355 0.84677 0.98864 1.22814 0.93050 0.94237 0.88415 0.91851 1.22363 0.91466 0.85332 1.04386 1.48098 1.35901 1.20765 1.30213 1.20154 0.84997 0.82538 0.82038 1.90748 1.39983 1.77771 1.30596 1.22249 0.98613 0.89408 0.93111 1.88107 1.57267 1.30516 1.51585 1.21272 0.93334 0.86213 0.96326 1.20546 0.99873 0.97716 0.96314 1.21560 0.97258 0.97156 0.91846 1.22185 1.00272 0.96460 1.00617 1.22865 0.91980 0.96533 0.93947 1.67746 1.24208 1.26182 1.01495 1.22716 0.93007 0.89628 0.98144 1.22562 0.92790 0.99745 0.90208 1.22917 0.90926 0.86533 1.02915 1.88180 1.46169 1.50511 1.42468 0.93634 0.77846 0.95297 0.94615 0.87940 0.90209 0.89999 0.90027 0.91633 0.91788 0.84561 0.84438 0.82555 0.82625 0.89398 0.89999 0.92785 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.91 5.50 -59.91 -0.33 -19.24 16 10 C 0.16 3.34 5.95 -4.04 -0.02 3.31 16 11 C 0.07 1.24 2.86 -26.58 -0.08 1.16 16 12 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.09 1.23 5.93 -3.53 -0.02 1.21 16 14 N -0.61 -7.42 3.02 -172.28 -0.52 -7.94 16 15 C 0.52 6.71 7.79 -10.98 -0.09 6.62 16 16 O -0.52 -9.12 15.97 -14.35 -0.23 -9.35 16 17 C 0.05 0.39 4.79 36.01 0.17 0.57 16 18 O -0.36 -3.82 9.86 -55.14 -0.54 -4.36 16 19 C 0.11 0.72 6.09 36.00 0.22 0.94 16 20 C -0.14 -1.17 5.53 -104.49 -0.58 -1.75 16 21 C -0.05 -0.39 9.86 -39.28 -0.39 -0.77 16 22 C -0.18 -1.18 10.11 -39.44 -0.40 -1.58 16 23 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 24 N -0.49 -4.83 10.36 -13.25 -0.14 -4.97 16 25 C 0.12 1.08 10.86 -17.55 -0.19 0.89 16 26 C 0.07 0.62 6.54 -3.53 -0.02 0.59 16 27 C 0.05 0.51 6.99 37.31 0.26 0.77 16 28 O -0.36 -5.99 10.14 -35.23 -0.36 -6.35 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.39 10.71 7.55 -40.82 -0.31 10.40 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.46 8.02 -51.93 -0.42 0.05 16 36 H 0.08 0.49 7.66 -51.93 -0.40 0.10 16 37 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 38 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.09 0.46 6.05 -51.93 -0.31 0.14 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -38.04 386.66 -9.00 -47.04 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.84 Total: 4.46 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.57 Total: 5.10 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.26 Total: -60.03 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.13 Total: -20.06 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.04 -9.00 -47.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673332177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.633 kcal (2) G-P(sol) polarization free energy of solvation -38.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds