Wall clock time and date at job start Tue Mar 31 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.47233 * 60.00180 * 3 2 1 7 7 C 1.38815 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47337 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.55225 * 59.87631 * 11 10 9 13 13 C 1.53296 * 109.51424 * 180.02562 * 11 10 9 14 14 N 1.47148 * 108.38343 * 172.22949 * 13 11 10 15 15 C 1.34777 * 120.98121 * 129.48933 * 14 13 11 16 16 O 1.21280 * 120.00266 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00268 * 179.97438 * 15 14 13 18 18 O 1.42891 * 109.47541 * 180.02562 * 17 15 14 19 19 C 1.42904 * 114.00406 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47326 * 179.97438 * 19 18 17 21 21 C 1.38669 * 120.41640 * 269.72117 * 20 19 18 22 22 C 1.38628 * 118.42216 * 179.78082 * 21 20 19 23 23 C 1.38232 * 119.15792 * 0.51846 * 22 21 20 24 24 N 1.31850 * 120.76188 * 359.72170 * 23 22 21 25 25 C 1.31883 * 121.72778 * 359.97438 * 24 23 22 26 26 C 1.47151 * 118.03873 * 309.46325 * 14 13 11 27 27 C 1.53294 * 108.38428 * 50.53625 * 26 14 13 28 28 O 1.42957 * 109.51438 * 299.75029 * 11 10 9 29 29 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00142 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46513 * 60.00537 * 10 9 7 32 32 H 1.08996 * 109.47299 * 300.00768 * 10 9 7 33 33 H 1.08996 * 109.67842 * 291.95153 * 13 11 10 34 34 H 1.08999 * 109.67990 * 52.46694 * 13 11 10 35 35 H 1.09001 * 109.46914 * 300.00360 * 17 15 14 36 36 H 1.09001 * 109.46868 * 59.99487 * 17 15 14 37 37 H 1.08998 * 109.47026 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46765 * 59.99878 * 19 18 17 39 39 H 1.08009 * 120.79341 * 0.02562 * 21 20 19 40 40 H 1.08001 * 120.42194 * 180.25791 * 22 21 20 41 41 H 1.07995 * 119.61846 * 179.74341 * 23 22 21 42 42 H 1.08006 * 119.62247 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.68629 * 170.26248 * 26 14 13 44 44 H 1.08998 * 109.67969 * 290.77799 * 26 14 13 45 45 H 1.09005 * 109.50976 * 67.61995 * 27 26 14 46 46 H 1.08996 * 109.51690 * 187.77283 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4345 -4.7614 -0.8903 13 6 1.8292 -6.1479 -0.0026 14 7 0.8622 -7.2409 0.1858 15 6 0.8489 -8.3056 -0.6405 16 8 1.6414 -8.3726 -1.5560 17 6 -0.1508 -9.4129 -0.4268 18 8 0.0342 -10.4205 -1.4228 19 6 -0.8685 -11.5226 -1.3096 20 6 -0.5852 -12.5186 -2.4045 21 6 -1.2346 -12.4228 -3.6259 22 6 -0.9392 -13.3583 -4.6054 23 6 -0.0217 -14.3549 -4.3301 24 7 0.5730 -14.4181 -3.1551 25 6 0.3210 -13.5419 -2.2021 26 6 -0.0895 -7.1375 1.3034 27 6 -0.7615 -5.7611 1.2403 28 8 0.2456 -4.7489 1.1682 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6852 -3.7150 0.8879 32 1 2.6840 -3.7142 -0.8921 33 1 2.3448 -6.2740 -0.9546 34 1 2.5542 -6.1540 0.8112 35 1 -0.0048 -9.8484 0.5617 36 1 -1.1608 -9.0097 -0.5004 37 1 -0.7372 -12.0015 -0.3393 38 1 -1.8935 -11.1635 -1.4018 39 1 -1.9506 -11.6356 -3.8113 40 1 -1.4230 -13.3116 -5.5699 41 1 0.2108 -15.0900 -5.0863 42 1 0.8282 -13.6255 -1.2522 43 1 -0.8444 -7.9189 1.2163 44 1 0.4418 -7.2442 2.2491 45 1 -1.3971 -5.7064 0.3564 46 1 -1.3663 -5.6099 2.1344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673332177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:12 Heat of formation + Delta-G solvation = -86.615671 kcal Electronic energy + Delta-G solvation = -27846.917754 eV Core-core repulsion = 23736.708083 eV Total energy + Delta-G solvation = -4110.209671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51327 -41.11422 -39.71181 -38.44811 -36.67893 -35.77471 -34.04611 -33.86319 -32.72802 -31.98485 -30.03277 -28.96085 -27.38055 -26.40329 -24.85272 -24.55081 -23.92949 -22.99764 -22.32400 -20.40360 -19.25402 -18.65289 -18.02516 -17.92223 -17.72581 -17.44105 -17.02080 -16.94611 -16.69155 -16.18799 -16.05016 -15.91381 -15.55594 -15.21283 -15.01936 -14.75567 -14.60258 -14.37617 -14.19015 -14.01714 -13.98862 -13.46309 -13.31347 -13.08007 -12.96579 -12.81554 -12.62695 -12.33056 -12.24407 -12.02184 -11.88475 -11.63078 -11.20292 -10.97307 -10.90688 -10.80225 -10.76831 -10.41928 -10.05516 -9.66406 -9.01158 -7.94629 -5.23980 0.03503 0.30513 1.44311 1.47897 1.49120 1.55950 1.59528 2.55722 2.61243 2.76410 3.05869 3.39260 3.40599 3.54951 3.57587 3.86916 3.87279 3.89014 3.96358 4.04135 4.04613 4.06652 4.11219 4.20457 4.25030 4.35862 4.41816 4.43218 4.49533 4.49630 4.65761 4.70270 4.75839 4.83474 4.89075 4.94493 5.08225 5.14919 5.20902 5.27199 5.48452 5.73180 5.97353 6.23647 6.26374 6.29146 6.97620 7.01585 7.33384 8.07068 8.32275 9.29229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025938 B = 0.001764 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.220190 B =15871.784800 C =16215.825887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.739 5.739 10 C 0.159 3.841 11 C 0.090 3.910 12 H 0.047 0.953 13 C 0.096 3.904 14 N -0.612 5.612 15 C 0.508 3.492 16 O -0.576 6.576 17 C 0.051 3.949 18 O -0.395 6.395 19 C 0.105 3.895 20 C -0.154 4.154 21 C -0.064 4.064 22 C -0.176 4.176 23 C 0.088 3.912 24 N -0.520 5.520 25 C 0.102 3.898 26 C 0.074 3.926 27 C 0.034 3.966 28 O -0.388 6.388 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.178 0.822 42 H 0.165 0.835 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -30.695 0.002 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.031 3.969 12 H 0.065 0.935 13 C -0.028 4.028 14 N -0.347 5.347 15 C 0.298 3.702 16 O -0.454 6.454 17 C -0.028 4.028 18 O -0.314 6.314 19 C 0.029 3.971 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.195 4.195 23 C -0.068 4.068 24 N -0.229 5.229 25 C -0.054 4.054 26 C -0.048 4.048 27 C -0.043 4.043 28 O -0.307 6.307 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.195 0.805 42 H 0.183 0.817 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.501 -31.196 -0.326 31.868 hybrid contribution -0.607 1.728 -0.371 1.869 sum -7.108 -29.468 -0.697 30.321 Atomic orbital electron populations 1.69845 1.06671 1.25997 1.59418 1.25612 0.96469 1.01201 1.03580 0.85021 0.78196 0.79509 0.76692 1.19004 1.21976 1.21879 1.19712 0.91605 0.85266 1.41339 0.90446 1.42389 1.05712 1.00766 1.89326 1.20778 0.93156 0.84081 0.98828 1.22421 0.92356 0.94003 0.88154 0.93452 1.22050 0.91784 0.85003 1.03964 1.48198 1.35771 1.19834 1.30941 1.21109 0.85000 0.83281 0.80812 1.90720 1.42549 1.79091 1.33057 1.22383 0.98230 0.87871 0.94336 1.88055 1.58834 1.31771 1.52754 1.21467 0.93705 0.85094 0.96864 1.20807 0.99692 0.97872 0.97252 1.21921 0.97558 0.97705 0.91847 1.22508 0.99704 0.95691 1.01598 1.23308 0.92135 0.97464 0.93881 1.67725 1.25396 1.27231 1.02563 1.22982 0.93714 0.90129 0.98582 1.22796 0.93133 0.99369 0.89477 1.23281 0.90118 0.86813 1.04045 1.88112 1.47434 1.53178 1.41942 0.93995 0.79229 0.95068 0.94198 0.89481 0.89371 0.86234 0.86760 0.89320 0.89504 0.82883 0.81890 0.80541 0.81735 0.84678 0.88572 0.92947 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -39.29 5.50 -343.44 -1.89 -41.18 16 10 C 0.16 6.61 5.95 86.38 0.51 7.12 16 11 C 0.09 3.05 2.86 30.69 0.09 3.14 16 12 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 13 C 0.10 2.69 5.93 86.36 0.51 3.21 16 14 N -0.61 -13.65 3.02 -817.37 -2.47 -16.11 16 15 C 0.51 12.39 7.79 87.66 0.68 13.07 16 16 O -0.58 -20.53 15.97 16.01 0.26 -20.27 16 17 C 0.05 0.68 4.79 71.24 0.34 1.02 16 18 O -0.39 -7.56 9.86 -129.94 -1.28 -8.84 16 19 C 0.10 1.13 6.09 71.24 0.43 1.57 16 20 C -0.15 -2.33 5.53 -19.78 -0.11 -2.44 16 21 C -0.06 -0.86 9.86 22.47 0.22 -0.64 16 22 C -0.18 -2.13 10.11 22.36 0.23 -1.91 16 23 C 0.09 1.31 11.18 84.69 0.95 2.26 16 24 N -0.52 -10.30 10.36 -195.85 -2.03 -12.33 16 25 C 0.10 1.78 10.86 84.67 0.92 2.70 16 26 C 0.07 1.02 6.54 86.35 0.56 1.59 16 27 C 0.03 0.70 6.99 72.08 0.50 1.21 16 28 O -0.39 -12.88 10.14 -148.98 -1.51 -14.39 16 29 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.38 21.39 7.55 -92.71 -0.70 20.69 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 2.72 7.08 -2.39 -0.02 2.71 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.12 0.71 8.02 -2.39 -0.02 0.69 16 36 H 0.11 0.79 7.66 -2.39 -0.02 0.77 16 37 H 0.09 0.51 8.09 -2.39 -0.02 0.49 16 38 H 0.09 0.51 8.09 -2.39 -0.02 0.50 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.14 0.62 6.05 -2.39 -0.01 0.61 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -86.25 386.66 0.83 -85.42 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.29 Total: 24.50 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.15 Total: 14.45 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -6.10 Total: -129.82 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -2.54 Total: -43.51 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -86.25 0.83 -85.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673332177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.198 kcal (2) G-P(sol) polarization free energy of solvation -86.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds