Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00370 * 3 2 1 5 5 H 1.48499 * 109.46783 * 30.00374 * 3 2 1 6 6 H 1.48499 * 109.46816 * 149.99585 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99739 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.55438 * 305.12482 * 11 10 9 13 13 C 1.53300 * 109.51386 * 184.99969 * 11 10 9 14 14 N 1.47148 * 108.41473 * 187.79338 * 13 11 10 15 15 C 1.34784 * 120.98330 * 230.49467 * 14 13 11 16 16 O 1.21283 * 119.99557 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00133 * 180.02562 * 15 14 13 18 18 O 1.42898 * 109.47190 * 180.02562 * 17 15 14 19 19 C 1.42902 * 114.00511 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47256 * 179.97438 * 19 18 17 21 21 C 1.38669 * 120.41956 * 90.00487 * 20 19 18 22 22 C 1.38622 * 118.42080 * 180.02562 * 21 20 19 23 23 C 1.38225 * 119.16336 * 359.97438 * 22 21 20 24 24 N 1.31856 * 120.76313 * 0.02562 * 23 22 21 25 25 C 1.31878 * 121.72216 * 359.69968 * 24 23 22 26 26 C 1.47148 * 118.03926 * 50.51693 * 14 13 11 27 27 C 1.53300 * 108.38206 * 309.46540 * 26 14 13 28 28 O 1.42955 * 109.22459 * 52.30018 * 27 26 14 29 29 H 0.97007 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99884 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47090 * 59.99527 * 10 9 7 32 32 H 1.08999 * 109.47026 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.68260 * 68.04945 * 13 11 10 34 34 H 1.08999 * 109.68056 * 307.53378 * 13 11 10 35 35 H 1.09000 * 109.47397 * 299.99733 * 17 15 14 36 36 H 1.09004 * 109.47328 * 59.99995 * 17 15 14 37 37 H 1.08995 * 109.47048 * 300.00323 * 19 18 17 38 38 H 1.09001 * 109.47119 * 59.99893 * 19 18 17 39 39 H 1.08001 * 120.78679 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.42230 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.62075 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.61761 * 180.31411 * 25 24 23 43 43 H 1.09002 * 109.68553 * 69.18322 * 26 14 13 44 44 H 1.09000 * 109.68444 * 189.70208 * 26 14 13 45 45 H 1.09005 * 109.51071 * 172.22485 * 27 26 14 46 46 H 1.08997 * 109.51211 * 292.32088 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8670 -1.5436 -0.8401 13 6 6.3827 -3.5129 -0.1259 14 7 7.8159 -3.2391 0.0647 15 6 8.7313 -3.6875 -0.8171 16 8 8.3782 -4.3273 -1.7851 17 6 10.1934 -3.3947 -0.5999 18 8 10.9574 -3.9702 -1.6616 19 6 12.3649 -3.7500 -1.5506 20 6 13.0680 -4.3970 -2.7159 21 6 13.2868 -3.6864 -3.8865 22 6 13.9371 -4.3224 -4.9326 23 6 14.3434 -5.6341 -4.7751 24 7 14.1185 -6.2791 -3.6473 25 6 13.5076 -5.7042 -2.6297 26 6 8.2203 -2.4619 1.2469 27 6 7.3651 -1.1910 1.3056 28 8 5.9836 -1.5491 1.2234 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8490 -3.0423 -0.8902 32 1 3.8484 -3.0426 0.8897 33 1 6.2189 -3.9395 -1.1156 34 1 6.0378 -4.2114 0.6365 35 1 10.3496 -2.3161 -0.5838 36 1 10.5123 -3.8222 0.3508 37 1 12.5664 -2.6788 -1.5535 38 1 12.7286 -4.1856 -0.6200 39 1 12.9584 -2.6619 -3.9808 40 1 14.1247 -3.7993 -5.8587 41 1 14.8504 -6.1368 -5.5855 42 1 13.3454 -6.2629 -1.7197 43 1 8.0602 -3.0539 2.1480 44 1 9.2736 -2.1929 1.1668 45 1 7.5510 -0.6701 2.2450 46 1 7.6234 -0.5394 0.4709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673332178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = -54.761589 kcal Electronic energy + Delta-G solvation = -27938.779549 eV Core-core repulsion = 23829.951174 eV Total energy + Delta-G solvation = -4108.828375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72270 -40.49128 -38.81052 -37.72330 -35.27548 -34.58788 -33.43850 -32.37882 -32.18429 -30.72169 -29.30594 -28.03244 -26.66851 -25.24658 -24.03383 -23.62101 -22.51041 -22.16784 -21.07730 -19.54613 -18.02304 -17.65127 -17.46024 -17.19860 -17.13182 -16.47139 -16.34392 -16.06583 -15.67357 -15.26042 -15.06004 -14.63706 -14.45504 -14.30215 -14.17540 -13.81577 -13.54110 -13.51819 -13.18302 -12.88332 -12.77878 -12.66342 -12.43320 -12.30521 -11.93257 -11.81716 -11.27573 -11.12089 -10.86499 -10.57409 -10.32146 -10.30523 -10.20994 -10.04699 -9.93874 -9.87767 -9.57501 -9.53211 -8.90063 -8.72614 -7.21829 -5.74645 -3.10051 0.54915 0.82283 2.29930 2.33066 3.17581 3.39942 3.44077 3.46918 3.59377 3.73171 3.97630 4.12039 4.26452 4.36879 4.48503 4.49562 4.51544 4.52995 4.62050 4.66225 4.71014 4.78533 4.85711 4.87446 4.93701 5.12487 5.13827 5.27136 5.29444 5.47741 5.51903 5.54717 5.63197 5.69977 5.74121 5.75403 5.90927 6.09241 6.20970 6.43939 6.49457 6.57292 7.04527 7.25469 7.51065 7.88134 8.00394 8.43839 9.22918 9.95183 10.15182 11.43579 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.001885 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.095225 B =14847.685377 C =15055.794564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.168 3.832 11 C 0.069 3.931 12 H 0.064 0.936 13 C 0.088 3.912 14 N -0.614 5.614 15 C 0.516 3.484 16 O -0.514 6.514 17 C 0.046 3.954 18 O -0.356 6.356 19 C 0.106 3.894 20 C -0.143 4.143 21 C -0.052 4.052 22 C -0.176 4.176 23 C 0.104 3.896 24 N -0.488 5.488 25 C 0.122 3.878 26 C 0.071 3.929 27 C 0.044 3.956 28 O -0.360 6.360 29 H 0.259 0.741 30 H 0.364 0.636 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.569 -6.343 -1.258 34.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.040 3.960 11 C 0.011 3.989 12 H 0.082 0.918 13 C -0.035 4.035 14 N -0.351 5.351 15 C 0.303 3.697 16 O -0.389 6.389 17 C -0.034 4.034 18 O -0.275 6.275 19 C 0.029 3.971 20 C -0.145 4.145 21 C -0.078 4.078 22 C -0.195 4.195 23 C -0.053 4.053 24 N -0.196 5.196 25 C -0.035 4.035 26 C -0.053 4.053 27 C -0.034 4.034 28 O -0.278 6.278 29 H 0.069 0.931 30 H 0.197 0.803 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 33.214 -7.734 -1.733 34.147 hybrid contribution 0.599 2.347 0.040 2.423 sum 33.814 -5.387 -1.693 34.282 Atomic orbital electron populations 1.69706 1.05082 1.25804 1.57596 1.24657 0.95235 0.97216 1.01998 0.86540 0.79448 0.84926 0.77708 1.21184 1.21736 1.20040 1.19056 0.80469 0.94828 1.42997 0.89120 1.42566 1.03982 1.01959 1.91094 1.20603 0.85351 0.90296 0.99780 1.22887 0.96815 0.92156 0.87086 0.91837 1.22337 0.78277 0.98176 1.04688 1.48099 1.07318 1.54961 1.24723 1.20162 0.87156 0.79780 0.82624 1.90757 1.80985 1.38469 1.28649 1.22244 0.90128 0.99101 0.91904 1.88112 1.16545 1.76917 1.45887 1.21271 0.80931 0.99237 0.95682 1.20542 1.01128 0.96342 0.96495 1.21551 0.94099 1.00383 0.91788 1.22183 1.00441 0.96768 1.00140 1.22871 0.95606 0.91800 0.95007 1.67751 1.13289 1.37966 1.00576 1.22719 0.92314 0.91207 0.97235 1.22543 0.99739 0.94234 0.88741 1.22931 0.82956 0.94505 1.02998 1.88155 1.23363 1.78376 1.37934 0.93080 0.80341 0.93633 0.94343 0.87739 0.90008 0.90086 0.89958 0.91807 0.91624 0.84592 0.84433 0.82532 0.82621 0.89887 0.89315 0.87606 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.66 13.97 55.49 0.78 -28.89 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.43 27.74 -169.99 -4.71 17.72 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.27 5.36 -59.91 -0.32 -18.59 16 10 C 0.17 3.25 5.93 -4.05 -0.02 3.23 16 11 C 0.07 1.09 2.81 -26.58 -0.07 1.01 16 12 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.09 1.17 5.93 -3.53 -0.02 1.15 16 14 N -0.61 -6.94 3.02 -172.28 -0.52 -7.46 16 15 C 0.52 6.37 7.79 -10.99 -0.09 6.28 16 16 O -0.51 -8.79 15.97 -14.36 -0.23 -9.02 16 17 C 0.05 0.37 4.79 36.00 0.17 0.54 16 18 O -0.36 -3.66 9.86 -55.14 -0.54 -4.20 16 19 C 0.11 0.68 6.09 36.00 0.22 0.90 16 20 C -0.14 -1.13 5.53 -104.48 -0.58 -1.71 16 21 C -0.05 -0.37 9.86 -39.28 -0.39 -0.76 16 22 C -0.18 -1.14 10.11 -39.44 -0.40 -1.54 16 23 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 24 N -0.49 -4.71 10.36 -13.25 -0.14 -4.85 16 25 C 0.12 1.05 10.86 -17.55 -0.19 0.86 16 26 C 0.07 0.56 6.54 -3.53 -0.02 0.53 16 27 C 0.04 0.45 6.99 37.31 0.26 0.71 16 28 O -0.36 -5.59 10.34 -35.23 -0.36 -5.95 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 30 H 0.36 8.76 5.53 -40.82 -0.23 8.53 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.08 0.42 8.02 -51.93 -0.42 0.01 16 37 H 0.06 0.29 8.10 -51.93 -0.42 -0.14 16 38 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 41 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.39 6.05 -51.93 -0.31 0.08 16 45 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -38.80 383.84 -8.66 -47.46 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.80 Total: 3.34 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.58 Total: 4.66 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.20 Total: -59.79 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.14 Total: -19.17 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.80 -8.66 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673332178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.303 kcal (2) G-P(sol) polarization free energy of solvation -38.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds