Wall clock time and date at job start Tue Mar 31 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00370 * 3 2 1 5 5 H 1.48499 * 109.46783 * 30.00374 * 3 2 1 6 6 H 1.48499 * 109.46816 * 149.99585 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99739 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.55438 * 305.12482 * 11 10 9 13 13 C 1.53300 * 109.51386 * 184.99969 * 11 10 9 14 14 N 1.47148 * 108.41473 * 187.79338 * 13 11 10 15 15 C 1.34784 * 120.98330 * 230.49467 * 14 13 11 16 16 O 1.21283 * 119.99557 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00133 * 180.02562 * 15 14 13 18 18 O 1.42898 * 109.47190 * 180.02562 * 17 15 14 19 19 C 1.42902 * 114.00511 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47256 * 179.97438 * 19 18 17 21 21 C 1.38669 * 120.41956 * 90.00487 * 20 19 18 22 22 C 1.38622 * 118.42080 * 180.02562 * 21 20 19 23 23 C 1.38225 * 119.16336 * 359.97438 * 22 21 20 24 24 N 1.31856 * 120.76313 * 0.02562 * 23 22 21 25 25 C 1.31878 * 121.72216 * 359.69968 * 24 23 22 26 26 C 1.47148 * 118.03926 * 50.51693 * 14 13 11 27 27 C 1.53300 * 108.38206 * 309.46540 * 26 14 13 28 28 O 1.42955 * 109.22459 * 52.30018 * 27 26 14 29 29 H 0.97007 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99884 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47090 * 59.99527 * 10 9 7 32 32 H 1.08999 * 109.47026 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.68260 * 68.04945 * 13 11 10 34 34 H 1.08999 * 109.68056 * 307.53378 * 13 11 10 35 35 H 1.09000 * 109.47397 * 299.99733 * 17 15 14 36 36 H 1.09004 * 109.47328 * 59.99995 * 17 15 14 37 37 H 1.08995 * 109.47048 * 300.00323 * 19 18 17 38 38 H 1.09001 * 109.47119 * 59.99893 * 19 18 17 39 39 H 1.08001 * 120.78679 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.42230 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.62075 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.61761 * 180.31411 * 25 24 23 43 43 H 1.09002 * 109.68553 * 69.18322 * 26 14 13 44 44 H 1.09000 * 109.68444 * 189.70208 * 26 14 13 45 45 H 1.09005 * 109.51071 * 172.22485 * 27 26 14 46 46 H 1.08997 * 109.51211 * 292.32088 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8670 -1.5436 -0.8401 13 6 6.3827 -3.5129 -0.1259 14 7 7.8159 -3.2391 0.0647 15 6 8.7313 -3.6875 -0.8171 16 8 8.3782 -4.3273 -1.7851 17 6 10.1934 -3.3947 -0.5999 18 8 10.9574 -3.9702 -1.6616 19 6 12.3649 -3.7500 -1.5506 20 6 13.0680 -4.3970 -2.7159 21 6 13.2868 -3.6864 -3.8865 22 6 13.9371 -4.3224 -4.9326 23 6 14.3434 -5.6341 -4.7751 24 7 14.1185 -6.2791 -3.6473 25 6 13.5076 -5.7042 -2.6297 26 6 8.2203 -2.4619 1.2469 27 6 7.3651 -1.1910 1.3056 28 8 5.9836 -1.5491 1.2234 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8490 -3.0423 -0.8902 32 1 3.8484 -3.0426 0.8897 33 1 6.2189 -3.9395 -1.1156 34 1 6.0378 -4.2114 0.6365 35 1 10.3496 -2.3161 -0.5838 36 1 10.5123 -3.8222 0.3508 37 1 12.5664 -2.6788 -1.5535 38 1 12.7286 -4.1856 -0.6200 39 1 12.9584 -2.6619 -3.9808 40 1 14.1247 -3.7993 -5.8587 41 1 14.8504 -6.1368 -5.5855 42 1 13.3454 -6.2629 -1.7197 43 1 8.0602 -3.0539 2.1480 44 1 9.2736 -2.1929 1.1668 45 1 7.5510 -0.6701 2.2450 46 1 7.6234 -0.5394 0.4709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673332178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:15 Heat of formation + Delta-G solvation = -83.917649 kcal Electronic energy + Delta-G solvation = -27940.043850 eV Core-core repulsion = 23829.951174 eV Total energy + Delta-G solvation = -4110.092676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52568 -41.11953 -39.74185 -38.45643 -36.84085 -35.81003 -34.09168 -33.91260 -32.74760 -32.36342 -30.04457 -29.14101 -27.43931 -26.39086 -24.71805 -24.55523 -23.75395 -23.00214 -22.45689 -20.39915 -19.78148 -18.66187 -18.03449 -17.95088 -17.73011 -17.45590 -17.03682 -16.91967 -16.71519 -16.26503 -16.04025 -15.97713 -15.56836 -15.32974 -14.87912 -14.76013 -14.66747 -14.42325 -14.26222 -14.08574 -14.00231 -13.75092 -13.38157 -13.15492 -13.02014 -12.86584 -12.62508 -12.34449 -12.32442 -12.04756 -11.85106 -11.67359 -11.22677 -11.01742 -10.91782 -10.80601 -10.77451 -10.42114 -10.05949 -9.67992 -9.32822 -8.03546 -5.37561 0.03055 0.30264 1.37136 1.40870 1.44491 1.49087 1.54996 2.48281 2.60316 2.71555 3.05666 3.28058 3.36626 3.43668 3.56563 3.84536 3.86532 3.86648 3.90789 4.02634 4.03740 4.04884 4.06258 4.15106 4.21717 4.30528 4.36474 4.41281 4.47830 4.49166 4.65837 4.70027 4.74284 4.83036 4.87935 4.91843 5.04820 5.14511 5.20497 5.26608 5.72709 5.72855 5.97019 6.17723 6.21756 6.26940 6.97360 7.01614 7.05671 7.80464 8.00890 9.17664 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.001885 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.095225 B =14847.685377 C =15055.794564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.238 4.238 8 H 0.058 0.942 9 N -0.753 5.753 10 C 0.161 3.839 11 C 0.087 3.913 12 H 0.057 0.943 13 C 0.094 3.906 14 N -0.612 5.612 15 C 0.508 3.492 16 O -0.575 6.575 17 C 0.050 3.950 18 O -0.395 6.395 19 C 0.105 3.895 20 C -0.154 4.154 21 C -0.064 4.064 22 C -0.176 4.176 23 C 0.088 3.912 24 N -0.520 5.520 25 C 0.102 3.898 26 C 0.072 3.928 27 C 0.033 3.967 28 O -0.389 6.389 29 H 0.259 0.741 30 H 0.367 0.633 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.095 0.905 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.203 -4.553 -0.186 37.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.076 0.924 9 N -0.398 5.398 10 C 0.035 3.965 11 C 0.028 3.972 12 H 0.075 0.925 13 C -0.030 4.030 14 N -0.348 5.348 15 C 0.298 3.702 16 O -0.454 6.454 17 C -0.028 4.028 18 O -0.315 6.315 19 C 0.029 3.971 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.195 4.195 23 C -0.068 4.068 24 N -0.229 5.229 25 C -0.054 4.054 26 C -0.050 4.050 27 C -0.044 4.044 28 O -0.308 6.308 29 H 0.067 0.933 30 H 0.200 0.800 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.194 0.806 42 H 0.183 0.817 43 H 0.113 0.887 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 36.917 -5.951 -0.622 37.399 hybrid contribution -0.518 1.706 -0.287 1.806 sum 36.399 -4.244 -0.909 36.657 Atomic orbital electron populations 1.69890 1.07094 1.26759 1.59523 1.25529 0.96184 1.01378 1.02451 0.85367 0.78720 0.79422 0.78082 1.20418 1.21939 1.17643 1.19054 0.82532 0.93686 1.41611 0.92398 1.42541 1.02480 1.03874 1.90948 1.20743 0.88038 0.88304 0.99452 1.22465 0.94126 0.93259 0.87377 0.92486 1.22041 0.80122 0.96824 1.03974 1.48194 1.06067 1.54880 1.25621 1.21110 0.89142 0.78477 0.81486 1.90730 1.82177 1.41286 1.31195 1.22390 0.86459 1.01239 0.92753 1.88060 1.18436 1.77769 1.47204 1.21461 0.79015 1.00705 0.95899 1.20814 1.01101 0.96186 0.97534 1.21917 0.93981 1.01328 0.91779 1.22504 0.99515 0.96460 1.01035 1.23305 0.95869 0.92593 0.95055 1.67727 1.14427 1.39159 1.01610 1.22988 0.92841 0.92021 0.97584 1.22811 1.01776 0.92754 0.87618 1.23317 0.80530 0.95924 1.04580 1.88092 1.26949 1.78559 1.37228 0.93264 0.79954 0.93588 0.94692 0.89477 0.89434 0.86631 0.86300 0.89424 0.89366 0.82834 0.81911 0.80596 0.81748 0.88672 0.84689 0.84969 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.96 46.29 27.74 68.60 1.90 48.19 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 7 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 8 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 9 N -0.75 -36.59 5.36 -343.47 -1.84 -38.43 16 10 C 0.16 6.31 5.93 86.38 0.51 6.82 16 11 C 0.09 2.64 2.81 30.69 0.09 2.72 16 12 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 13 C 0.09 2.44 5.93 86.36 0.51 2.96 16 14 N -0.61 -12.28 3.02 -817.35 -2.47 -14.75 16 15 C 0.51 11.50 7.79 87.65 0.68 12.18 16 16 O -0.58 -19.73 15.97 16.00 0.26 -19.47 16 17 C 0.05 0.59 4.79 71.23 0.34 0.94 16 18 O -0.40 -7.10 9.86 -129.94 -1.28 -8.38 16 19 C 0.11 1.02 6.09 71.24 0.43 1.46 16 20 C -0.15 -2.20 5.53 -19.77 -0.11 -2.31 16 21 C -0.06 -0.81 9.86 22.46 0.22 -0.59 16 22 C -0.18 -2.03 10.11 22.36 0.23 -1.80 16 23 C 0.09 1.27 11.18 84.69 0.95 2.21 16 24 N -0.52 -10.04 10.36 -195.84 -2.03 -12.07 16 25 C 0.10 1.72 10.86 84.67 0.92 2.63 16 26 C 0.07 0.81 6.54 86.36 0.56 1.37 16 27 C 0.03 0.55 6.99 72.08 0.50 1.05 16 28 O -0.39 -11.20 10.34 -148.98 -1.54 -12.74 16 29 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 30 H 0.37 17.18 5.53 -92.71 -0.51 16.67 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 2.57 7.08 -2.39 -0.02 2.56 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 0.57 7.66 -2.39 -0.02 0.55 16 36 H 0.12 0.54 8.02 -2.38 -0.02 0.52 16 37 H 0.09 0.41 8.10 -2.39 -0.02 0.39 16 38 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.14 0.29 6.05 -2.39 -0.01 0.28 16 45 H 0.13 1.48 8.14 -2.38 -0.02 1.47 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -89.04 383.84 0.91 -88.13 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.42 Total: 20.04 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 7.19 Total: 13.13 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -6.04 Total: -128.91 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.57 Total: -40.59 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Total: -89.04 0.91 -88.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673332178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.216 kcal (2) G-P(sol) polarization free energy of solvation -89.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds