Wall clock time and date at job start Tue Mar 31 2020 18:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47305 * 272.81094 * 3 2 1 5 5 H 1.48501 * 109.47238 * 32.81428 * 3 2 1 6 6 H 1.48501 * 109.47048 * 152.81236 * 3 2 1 7 7 C 1.38811 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99853 * 31.47509 * 7 2 1 9 9 N 1.36937 * 120.00133 * 211.47686 * 7 2 1 10 10 C 1.46495 * 119.99863 * 42.12282 * 9 7 2 11 11 C 1.52998 * 109.47121 * 96.20173 * 10 9 7 12 12 O 1.42893 * 109.47465 * 64.53871 * 11 10 9 13 13 C 1.46501 * 119.99917 * 222.12749 * 9 7 2 14 14 H 1.09003 * 109.49514 * 179.97438 * 13 9 7 15 15 C 1.53037 * 109.49833 * 59.83732 * 13 9 7 16 16 C 1.53046 * 109.53645 * 178.68310 * 15 13 9 17 17 C 1.53192 * 109.31049 * 61.36247 * 16 15 13 18 18 N 1.46928 * 108.77564 * 305.36506 * 17 16 15 19 19 C 1.34782 * 120.63020 * 233.58793 * 18 17 16 20 20 O 1.21572 * 120.00203 * 184.84429 * 19 18 17 21 21 C 1.47624 * 119.99770 * 4.84346 * 19 18 17 22 22 C 1.40288 * 120.49851 * 318.19091 * 21 19 18 23 23 C 1.37948 * 118.35495 * 179.75845 * 22 21 19 24 24 C 1.39171 * 119.26475 * 0.51499 * 23 22 21 25 25 O 1.35498 * 119.52771 * 179.71827 * 24 23 22 26 26 N 1.32408 * 120.94381 * 359.75225 * 24 23 22 27 27 C 1.31656 * 121.80197 * 359.96886 * 26 24 23 28 28 C 1.46919 * 118.74061 * 53.61038 * 18 17 16 29 29 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47346 * 336.20308 * 10 9 7 31 31 H 1.08996 * 109.47473 * 216.20179 * 10 9 7 32 32 H 1.09006 * 109.46985 * 184.54290 * 11 10 9 33 33 H 1.09004 * 109.46800 * 304.53456 * 11 10 9 34 34 H 0.96692 * 114.00503 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.45867 * 298.69671 * 15 13 9 36 36 H 1.08996 * 109.46336 * 58.66504 * 15 13 9 37 37 H 1.09006 * 109.49661 * 301.41348 * 16 15 13 38 38 H 1.08996 * 109.52377 * 181.33068 * 16 15 13 39 39 H 1.09003 * 109.58277 * 185.57747 * 17 16 15 40 40 H 1.08998 * 109.58805 * 65.15573 * 17 16 15 41 41 H 1.07997 * 120.81945 * 359.97438 * 22 21 19 42 42 H 1.07997 * 120.36903 * 180.23813 * 23 22 21 43 43 H 0.96693 * 114.00499 * 270.02974 * 25 24 23 44 44 H 1.08002 * 119.68373 * 180.02562 * 27 26 24 45 45 H 1.08996 * 109.59083 * 186.59813 * 28 18 17 46 46 H 1.09006 * 109.70258 * 66.24562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4382 2.0808 -1.3984 5 1 1.4786 2.6347 0.7587 6 1 3.5762 1.4238 0.6397 7 6 2.0103 -1.2021 -0.0005 8 1 1.5895 -2.0684 -0.4893 9 7 3.2286 -1.2897 0.6186 10 6 3.4354 -0.6527 1.9215 11 6 3.2351 -1.6860 3.0319 12 8 4.2413 -2.6956 2.9303 13 6 4.3250 -2.0202 -0.0220 14 1 5.2090 -1.9812 0.6147 15 6 4.6409 -1.3825 -1.3768 16 6 5.8079 -2.1246 -2.0321 17 6 5.4117 -3.5858 -2.2661 18 7 4.9678 -4.1654 -0.9910 19 6 5.5183 -5.3042 -0.5257 20 8 5.0828 -5.8214 0.4847 21 6 6.6501 -5.9237 -1.2431 22 6 6.6529 -5.9926 -2.6443 23 6 7.7353 -6.5764 -3.2693 24 6 8.7754 -7.0834 -2.4961 25 8 9.8385 -7.6630 -3.1043 26 7 8.7407 -7.0081 -1.1746 27 6 7.7302 -6.4547 -0.5375 28 6 3.9120 -3.4802 -0.2331 29 1 -0.4850 0.8400 0.0004 30 1 2.7188 0.1590 2.0471 31 1 4.4486 -0.2543 1.9745 32 1 3.3093 -1.1954 4.0025 33 1 2.2506 -2.1426 2.9300 34 1 4.1754 -3.3858 3.6043 35 1 3.7637 -1.4446 -2.0207 36 1 4.9114 -0.3366 -1.2316 37 1 6.6785 -2.0841 -1.3774 38 1 6.0481 -1.6556 -2.9862 39 1 6.2710 -4.1419 -2.6408 40 1 4.5992 -3.6325 -2.9913 41 1 5.8297 -5.5953 -3.2195 42 1 7.7730 -6.6432 -4.3466 43 1 9.7396 -8.6143 -3.2469 44 1 7.7376 -6.4113 0.5416 45 1 3.7817 -3.9666 0.7336 46 1 2.9759 -3.5182 -0.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689207909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:24 Heat of formation + Delta-G solvation = -43.913691 kcal Electronic energy + Delta-G solvation = -30154.622903 eV Core-core repulsion = 26046.264928 eV Total energy + Delta-G solvation = -4108.357975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08853 -39.62223 -37.75179 -37.12235 -36.38556 -34.87136 -33.21662 -32.12322 -31.57636 -30.87998 -29.84387 -27.46699 -25.66821 -24.49839 -23.82001 -23.56977 -22.29991 -21.27092 -20.06141 -19.30158 -19.05916 -17.45551 -16.99321 -16.81208 -16.44423 -16.34871 -15.84765 -15.24737 -14.91067 -14.74618 -14.48587 -14.32633 -14.04027 -13.61750 -13.47078 -13.35156 -13.13364 -13.10970 -12.86874 -12.48411 -12.43965 -12.26074 -12.14540 -11.89086 -11.55044 -10.92449 -10.85619 -10.69610 -10.40054 -10.31712 -10.21576 -10.12471 -9.98715 -9.90675 -9.57117 -9.54546 -9.24117 -9.16827 -8.54602 -8.33168 -6.73567 -6.13535 -3.48511 0.39601 0.83735 2.68143 3.09836 3.21366 3.30935 3.43999 3.48625 3.53726 4.26436 4.43909 4.47906 4.49056 4.67663 4.79469 4.92886 5.00874 5.07007 5.17259 5.26188 5.33096 5.39915 5.51053 5.64580 5.69080 5.79614 5.91648 5.99528 6.05744 6.07978 6.11859 6.18646 6.23912 6.33097 6.52859 6.58940 6.67582 6.75856 6.77448 7.02541 7.07175 7.08458 7.51836 7.63152 7.99209 8.25567 8.26908 8.39425 8.96567 9.65333 10.13963 11.01896 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.003263 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.765964 B = 8578.700406 C = 9258.765463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.049 3.951 3 Si 0.850 3.150 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.277 4.277 8 H 0.074 0.926 9 N -0.588 5.588 10 C 0.154 3.846 11 C 0.054 3.946 12 O -0.565 6.565 13 C 0.177 3.823 14 H 0.060 0.940 15 C -0.131 4.131 16 C -0.132 4.132 17 C 0.089 3.911 18 N -0.594 5.594 19 C 0.560 3.440 20 O -0.532 6.532 21 C -0.182 4.182 22 C -0.036 4.036 23 C -0.192 4.192 24 C 0.324 3.676 25 O -0.482 6.482 26 N -0.505 5.505 27 C 0.178 3.822 28 C 0.107 3.893 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.050 0.950 34 H 0.363 0.637 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.403 0.597 44 H 0.171 0.829 45 H 0.095 0.905 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.208 -10.859 -5.649 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.153 4.153 3 Si 0.677 3.323 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.186 1.186 7 C -0.405 4.405 8 H 0.091 0.909 9 N -0.309 5.309 10 C 0.028 3.972 11 C -0.026 4.026 12 O -0.369 6.369 13 C 0.069 3.931 14 H 0.078 0.922 15 C -0.170 4.170 16 C -0.171 4.171 17 C -0.034 4.034 18 N -0.326 5.326 19 C 0.346 3.654 20 O -0.410 6.410 21 C -0.188 4.188 22 C -0.061 4.061 23 C -0.213 4.213 24 C 0.145 3.855 25 O -0.290 6.290 26 N -0.224 5.224 27 C 0.020 3.980 28 C -0.015 4.015 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.208 0.792 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.261 0.739 44 H 0.188 0.812 45 H 0.114 0.886 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.903 -10.434 -5.196 18.919 hybrid contribution -0.686 0.734 -0.216 1.028 sum 14.216 -9.699 -5.411 18.041 Atomic orbital electron populations 1.70034 1.06375 1.26983 1.48652 1.25583 0.94753 0.97675 0.97293 0.87264 0.81637 0.85432 0.78000 1.21572 1.22284 1.18645 1.18567 0.92706 0.95036 1.34182 0.90851 1.43942 1.09426 1.61834 1.15713 1.21242 0.98687 0.92830 0.84490 1.23037 0.91135 0.90595 0.97802 1.86530 1.54285 1.38808 1.57271 1.20531 0.90872 0.89661 0.92022 0.92223 1.22015 0.97178 0.99007 0.98832 1.21937 0.99521 0.94586 1.01058 1.22310 1.00056 0.95210 0.85817 1.48128 1.38621 1.23524 1.22315 1.17896 0.82151 0.80954 0.84399 1.90802 1.62616 1.62232 1.25310 1.21122 0.98628 1.04304 0.94722 1.21889 0.97936 0.93030 0.93289 1.22044 0.93846 1.03336 1.02047 1.19405 0.85584 0.93347 0.87169 1.84718 1.39017 1.27571 1.77684 1.67245 1.26702 1.18172 1.10249 1.22666 0.85973 0.88888 1.00469 1.22299 0.88290 0.93889 0.97023 0.92676 0.91341 0.94324 0.95678 0.93181 0.79203 0.90801 0.92504 0.92072 0.91250 0.89477 0.90811 0.82921 0.83515 0.73862 0.81225 0.88642 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.97 55.49 0.78 -24.60 16 2 C 0.05 1.33 5.00 -17.43 -0.09 1.24 16 3 Si 0.85 20.45 26.50 -169.99 -4.50 15.95 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.03 5.94 56.52 0.34 -5.70 16 7 C -0.28 -7.11 8.48 -15.06 -0.13 -7.23 16 8 H 0.07 2.06 6.96 -52.49 -0.37 1.69 16 9 N -0.59 -13.09 1.89 -165.53 -0.31 -13.40 16 10 C 0.15 3.24 4.27 -4.05 -0.02 3.22 16 11 C 0.05 1.01 7.39 37.16 0.27 1.28 16 12 O -0.57 -10.05 12.03 -35.23 -0.42 -10.47 16 13 C 0.18 3.43 2.12 -67.81 -0.14 3.28 16 14 H 0.06 1.20 7.55 -51.93 -0.39 0.81 16 15 C -0.13 -2.29 5.11 -26.69 -0.14 -2.43 16 16 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 17 C 0.09 1.07 5.16 -3.71 -0.02 1.05 16 18 N -0.59 -9.12 2.97 -173.97 -0.52 -9.63 16 19 C 0.56 8.73 7.35 -12.43 -0.09 8.64 16 20 O -0.53 -10.13 16.39 5.30 0.09 -10.04 16 21 C -0.18 -2.25 5.34 -104.82 -0.56 -2.81 16 22 C -0.04 -0.34 7.45 -38.92 -0.29 -0.63 16 23 C -0.19 -1.60 10.02 -39.34 -0.39 -2.00 16 24 C 0.32 3.29 7.74 -16.96 -0.13 3.16 16 25 O -0.48 -4.01 13.55 -18.19 -0.25 -4.26 16 26 N -0.51 -6.17 10.37 -12.97 -0.13 -6.30 16 27 C 0.18 2.18 10.82 -17.15 -0.19 2.00 16 28 C 0.11 2.01 5.75 -3.72 -0.02 1.99 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.07 1.53 5.10 -51.93 -0.27 1.26 16 31 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.36 4.97 9.12 45.56 0.42 5.38 16 35 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.86 3.89 -51.93 -0.20 0.65 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.15 1.18 6.20 -52.49 -0.33 0.85 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.40 1.26 9.06 45.56 0.41 1.67 16 44 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 45 H 0.10 2.00 6.44 -51.93 -0.33 1.66 16 46 H 0.07 1.45 6.83 -51.93 -0.35 1.10 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -33.31 366.06 -6.66 -39.97 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.81 Total: 8.40 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -2.09 Total: 8.87 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.19 Total: -53.94 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.58 Total: -24.76 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.50 Total: 15.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.31 -6.66 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689207909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.940 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds