Wall clock time and date at job start Tue Mar 31 2020 18:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47305 * 272.81094 * 3 2 1 5 5 H 1.48501 * 109.47238 * 32.81428 * 3 2 1 6 6 H 1.48501 * 109.47048 * 152.81236 * 3 2 1 7 7 C 1.38811 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99853 * 31.47509 * 7 2 1 9 9 N 1.36937 * 120.00133 * 211.47686 * 7 2 1 10 10 C 1.46495 * 119.99863 * 42.12282 * 9 7 2 11 11 C 1.52998 * 109.47121 * 96.20173 * 10 9 7 12 12 O 1.42893 * 109.47465 * 64.53871 * 11 10 9 13 13 C 1.46501 * 119.99917 * 222.12749 * 9 7 2 14 14 H 1.09003 * 109.49514 * 179.97438 * 13 9 7 15 15 C 1.53037 * 109.49833 * 59.83732 * 13 9 7 16 16 C 1.53046 * 109.53645 * 178.68310 * 15 13 9 17 17 C 1.53192 * 109.31049 * 61.36247 * 16 15 13 18 18 N 1.46928 * 108.77564 * 305.36506 * 17 16 15 19 19 C 1.34782 * 120.63020 * 233.58793 * 18 17 16 20 20 O 1.21572 * 120.00203 * 184.84429 * 19 18 17 21 21 C 1.47624 * 119.99770 * 4.84346 * 19 18 17 22 22 C 1.40288 * 120.49851 * 318.19091 * 21 19 18 23 23 C 1.37948 * 118.35495 * 179.75845 * 22 21 19 24 24 C 1.39171 * 119.26475 * 0.51499 * 23 22 21 25 25 O 1.35498 * 119.52771 * 179.71827 * 24 23 22 26 26 N 1.32408 * 120.94381 * 359.75225 * 24 23 22 27 27 C 1.31656 * 121.80197 * 359.96886 * 26 24 23 28 28 C 1.46919 * 118.74061 * 53.61038 * 18 17 16 29 29 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47346 * 336.20308 * 10 9 7 31 31 H 1.08996 * 109.47473 * 216.20179 * 10 9 7 32 32 H 1.09006 * 109.46985 * 184.54290 * 11 10 9 33 33 H 1.09004 * 109.46800 * 304.53456 * 11 10 9 34 34 H 0.96692 * 114.00503 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.45867 * 298.69671 * 15 13 9 36 36 H 1.08996 * 109.46336 * 58.66504 * 15 13 9 37 37 H 1.09006 * 109.49661 * 301.41348 * 16 15 13 38 38 H 1.08996 * 109.52377 * 181.33068 * 16 15 13 39 39 H 1.09003 * 109.58277 * 185.57747 * 17 16 15 40 40 H 1.08998 * 109.58805 * 65.15573 * 17 16 15 41 41 H 1.07997 * 120.81945 * 359.97438 * 22 21 19 42 42 H 1.07997 * 120.36903 * 180.23813 * 23 22 21 43 43 H 0.96693 * 114.00499 * 270.02974 * 25 24 23 44 44 H 1.08002 * 119.68373 * 180.02562 * 27 26 24 45 45 H 1.08996 * 109.59083 * 186.59813 * 28 18 17 46 46 H 1.09006 * 109.70258 * 66.24562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4382 2.0808 -1.3984 5 1 1.4786 2.6347 0.7587 6 1 3.5762 1.4238 0.6397 7 6 2.0103 -1.2021 -0.0005 8 1 1.5895 -2.0684 -0.4893 9 7 3.2286 -1.2897 0.6186 10 6 3.4354 -0.6527 1.9215 11 6 3.2351 -1.6860 3.0319 12 8 4.2413 -2.6956 2.9303 13 6 4.3250 -2.0202 -0.0220 14 1 5.2090 -1.9812 0.6147 15 6 4.6409 -1.3825 -1.3768 16 6 5.8079 -2.1246 -2.0321 17 6 5.4117 -3.5858 -2.2661 18 7 4.9678 -4.1654 -0.9910 19 6 5.5183 -5.3042 -0.5257 20 8 5.0828 -5.8214 0.4847 21 6 6.6501 -5.9237 -1.2431 22 6 6.6529 -5.9926 -2.6443 23 6 7.7353 -6.5764 -3.2693 24 6 8.7754 -7.0834 -2.4961 25 8 9.8385 -7.6630 -3.1043 26 7 8.7407 -7.0081 -1.1746 27 6 7.7302 -6.4547 -0.5375 28 6 3.9120 -3.4802 -0.2331 29 1 -0.4850 0.8400 0.0004 30 1 2.7188 0.1590 2.0471 31 1 4.4486 -0.2543 1.9745 32 1 3.3093 -1.1954 4.0025 33 1 2.2506 -2.1426 2.9300 34 1 4.1754 -3.3858 3.6043 35 1 3.7637 -1.4446 -2.0207 36 1 4.9114 -0.3366 -1.2316 37 1 6.6785 -2.0841 -1.3774 38 1 6.0481 -1.6556 -2.9862 39 1 6.2710 -4.1419 -2.6408 40 1 4.5992 -3.6325 -2.9913 41 1 5.8297 -5.5953 -3.2195 42 1 7.7730 -6.6432 -4.3466 43 1 9.7396 -8.6143 -3.2469 44 1 7.7376 -6.4113 0.5416 45 1 3.7817 -3.9666 0.7336 46 1 2.9759 -3.5182 -0.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689207909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:23 Heat of formation + Delta-G solvation = -72.725288 kcal Electronic energy + Delta-G solvation = -30155.872267 eV Core-core repulsion = 26046.264928 eV Total energy + Delta-G solvation = -4109.607339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03240 -40.71845 -39.14636 -37.95051 -37.78816 -36.41937 -34.35387 -33.61328 -33.11198 -31.88706 -31.12669 -29.16646 -26.85464 -26.05069 -24.86352 -24.59879 -23.66629 -22.70140 -21.54176 -20.45159 -19.93596 -18.58743 -18.41045 -18.21097 -17.82800 -17.21988 -16.93373 -16.81172 -16.66813 -15.78375 -15.70720 -15.56341 -15.17584 -15.08531 -14.86011 -14.64272 -14.38508 -14.25476 -14.12941 -14.02284 -13.78433 -13.61679 -13.29557 -13.18243 -12.83096 -12.76150 -12.28100 -12.15432 -12.03349 -11.89947 -11.72449 -11.60692 -11.24300 -11.22733 -10.81634 -10.74871 -10.57624 -10.46866 -10.05173 -9.68974 -8.58160 -8.22255 -5.53736 -0.43105 0.08025 1.36834 1.46224 1.55077 1.57407 1.92902 2.44273 2.47215 2.71489 2.98724 3.32538 3.40553 3.59525 3.60801 3.72534 3.93991 4.04211 4.07418 4.11563 4.24182 4.30054 4.44096 4.48247 4.54368 4.59486 4.62629 4.65161 4.76082 4.81119 4.90094 4.92199 4.97226 5.02153 5.07039 5.14595 5.17959 5.35733 5.43760 5.52245 5.59084 5.98287 6.28422 6.39613 6.56243 6.80128 6.97644 7.03987 7.07952 7.67125 8.17334 8.97611 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.003263 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.765964 B = 8578.700406 C = 9258.765463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.911 3.089 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.255 4.255 8 H 0.038 0.962 9 N -0.598 5.598 10 C 0.145 3.855 11 C 0.065 3.935 12 O -0.576 6.576 13 C 0.180 3.820 14 H 0.056 0.944 15 C -0.127 4.127 16 C -0.124 4.124 17 C 0.086 3.914 18 N -0.594 5.594 19 C 0.560 3.440 20 O -0.577 6.577 21 C -0.196 4.196 22 C -0.029 4.029 23 C -0.173 4.173 24 C 0.324 3.676 25 O -0.488 6.488 26 N -0.530 5.530 27 C 0.171 3.829 28 C 0.124 3.876 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.382 0.618 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.176 0.824 42 H 0.185 0.815 43 H 0.425 0.575 44 H 0.163 0.837 45 H 0.068 0.932 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.208 -11.122 -7.662 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.738 3.262 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.169 1.169 7 C -0.384 4.384 8 H 0.056 0.944 9 N -0.320 5.320 10 C 0.019 3.981 11 C -0.015 4.015 12 O -0.382 6.382 13 C 0.073 3.927 14 H 0.074 0.926 15 C -0.167 4.167 16 C -0.162 4.162 17 C -0.035 4.035 18 N -0.326 5.326 19 C 0.348 3.652 20 O -0.457 6.457 21 C -0.202 4.202 22 C -0.054 4.054 23 C -0.194 4.194 24 C 0.145 3.855 25 O -0.299 6.299 26 N -0.249 5.249 27 C 0.013 3.987 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.193 0.807 42 H 0.202 0.798 43 H 0.288 0.712 44 H 0.180 0.820 45 H 0.086 0.914 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.965 -10.729 -7.225 22.137 hybrid contribution -1.524 0.623 0.396 1.693 sum 16.441 -10.106 -6.829 20.471 Atomic orbital electron populations 1.70130 1.07920 1.27530 1.51656 1.26035 0.95110 1.00497 0.98040 0.86285 0.80955 0.81378 0.77584 1.21915 1.22850 1.16867 1.18341 0.93568 0.93697 1.32821 0.94415 1.44044 1.09215 1.62203 1.16493 1.21322 0.98837 0.93293 0.84645 1.22764 0.90056 0.90265 0.98386 1.86475 1.53737 1.39397 1.58580 1.20588 0.89533 0.89605 0.92990 0.92550 1.21925 0.98378 0.98968 0.97383 1.21903 0.97386 0.94722 1.02228 1.22612 1.01780 0.94787 0.84352 1.48135 1.37764 1.23477 1.23186 1.18396 0.82392 0.80467 0.83901 1.90770 1.64050 1.63447 1.27471 1.20796 0.97476 1.05920 0.95961 1.22116 0.98901 0.92542 0.91850 1.22342 0.92187 1.01208 1.03630 1.19721 0.86123 0.92892 0.86734 1.84675 1.38510 1.29585 1.77151 1.67237 1.26910 1.18970 1.11768 1.22555 0.86364 0.89329 1.00430 1.21791 0.88630 0.93716 0.95876 0.92824 0.92677 0.93125 0.92467 0.95589 0.77003 0.92650 0.93393 0.91773 0.88020 0.86268 0.89427 0.80675 0.79786 0.71201 0.81997 0.91380 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.97 21.65 0.30 -55.14 16 2 C 0.00 0.10 5.00 84.86 0.42 0.52 16 3 Si 0.91 42.95 26.50 68.60 1.82 44.77 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.74 5.94 99.48 0.59 -10.14 16 7 C -0.25 -13.55 8.48 84.03 0.71 -12.84 16 8 H 0.04 2.26 6.96 -2.91 -0.02 2.24 16 9 N -0.60 -27.03 1.89 -677.62 -1.28 -28.31 16 10 C 0.14 6.06 4.27 86.38 0.37 6.42 16 11 C 0.07 2.40 7.39 71.98 0.53 2.94 16 12 O -0.58 -20.31 12.03 -148.98 -1.79 -22.10 16 13 C 0.18 6.99 2.12 45.07 0.10 7.09 16 14 H 0.06 2.24 7.55 -2.39 -0.02 2.22 16 15 C -0.13 -4.31 5.11 30.62 0.16 -4.16 16 16 C -0.12 -2.90 6.08 30.67 0.19 -2.71 16 17 C 0.09 1.83 5.16 86.36 0.45 2.27 16 18 N -0.59 -17.88 2.97 -822.57 -2.44 -20.33 16 19 C 0.56 17.35 7.35 86.72 0.64 17.98 16 20 O -0.58 -22.69 16.39 -3.94 -0.06 -22.75 16 21 C -0.20 -4.52 5.34 -19.99 -0.11 -4.62 16 22 C -0.03 -0.44 7.45 22.70 0.17 -0.27 16 23 C -0.17 -2.09 10.02 22.43 0.22 -1.87 16 24 C 0.32 5.50 7.74 84.83 0.66 6.16 16 25 O -0.49 -6.36 13.55 -87.99 -1.19 -7.56 16 26 N -0.53 -12.00 10.37 -307.83 -3.19 -15.19 16 27 C 0.17 4.06 10.82 85.03 0.92 4.98 16 28 C 0.12 4.78 5.75 86.36 0.50 5.28 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.05 2.44 5.10 -2.39 -0.01 2.43 16 31 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 32 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.38 10.29 9.12 -74.06 -0.68 9.62 16 35 H 0.05 2.08 7.70 -2.39 -0.02 2.06 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.12 1.82 3.89 -2.39 -0.01 1.82 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.18 1.87 6.20 -2.91 -0.02 1.85 16 42 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.43 1.13 9.06 -74.06 -0.67 0.46 16 44 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 45 H 0.07 2.99 6.44 -2.39 -0.02 2.98 16 46 H 0.05 2.05 6.83 -2.38 -0.02 2.04 16 Total: -1.00 -76.07 366.06 -2.35 -78.42 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.42 Total: 21.02 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.92 Total: 27.17 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.62 Total: -118.97 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -3.05 Total: -52.41 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.82 Total: 44.77 kcal Total: -76.07 -2.35 -78.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689207909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.696 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds