Wall clock time and date at job start Tue Mar 31 2020 18:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86806 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46741 * 299.99644 * 3 2 1 6 6 H 1.48498 * 109.47319 * 59.99601 * 3 2 1 7 7 C 1.38942 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00370 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00319 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00442 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00057 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00344 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47189 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99965 * 185.06246 * 13 12 10 15 15 H 1.09007 * 109.47022 * 181.50184 * 14 13 12 16 16 C 1.53000 * 109.47355 * 301.49876 * 14 13 12 17 17 N 1.46505 * 109.47146 * 305.00026 * 16 14 13 18 18 C 1.34776 * 119.99840 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00062 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99847 * 179.72686 * 18 17 16 21 21 C 1.50703 * 109.47176 * 180.27729 * 20 18 17 22 22 C 1.34508 * 125.78986 * 89.71243 * 21 20 18 23 23 C 1.41385 * 106.84032 * 179.88965 * 22 21 20 24 24 C 1.34512 * 106.84048 * 0.37355 * 23 22 21 25 25 O 1.34296 * 125.78659 * 270.02412 * 21 20 18 26 26 C 1.53001 * 109.46859 * 61.50221 * 14 13 12 27 27 C 1.52997 * 117.49680 * 133.77260 * 26 14 13 28 28 C 1.52996 * 117.50276 * 65.10845 * 26 14 13 29 29 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99946 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46473 * 59.99788 * 12 10 9 32 32 H 1.08996 * 109.47242 * 300.00115 * 12 10 9 33 33 H 1.00907 * 110.99544 * 61.11365 * 13 12 10 34 34 H 1.08999 * 109.47424 * 184.99755 * 16 14 13 35 35 H 1.09005 * 109.46698 * 64.99757 * 16 14 13 36 36 H 0.96994 * 119.99939 * 0.02562 * 17 16 14 37 37 H 1.09001 * 109.47309 * 300.27584 * 20 18 17 38 38 H 1.08996 * 109.47549 * 60.27405 * 20 18 17 39 39 H 1.08006 * 126.58329 * 0.02562 * 22 21 20 40 40 H 1.08005 * 126.57806 * 180.16066 * 23 22 21 41 41 H 1.08004 * 125.79127 * 179.74752 * 24 23 22 42 42 H 1.09001 * 115.54765 * 279.43411 * 26 14 13 43 43 H 1.08997 * 117.50548 * 359.97438 * 27 26 14 44 44 H 1.09000 * 117.50032 * 145.02575 * 27 26 14 45 45 H 1.08993 * 117.50432 * 214.97937 * 28 26 14 46 46 H 1.09011 * 117.49409 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.5022 -7.2673 -0.1201 15 1 2.2302 -8.0781 -0.0913 16 6 0.5171 -7.4250 1.0399 17 7 1.2285 -7.2622 2.3103 18 6 0.5582 -7.3603 3.4754 19 8 -0.6340 -7.5829 3.4722 20 6 1.2911 -7.1990 4.7822 21 6 0.3217 -7.3592 5.9249 22 6 0.0124 -8.5159 6.5377 23 6 -0.9286 -8.2062 7.5465 24 6 -1.1441 -6.8799 7.4844 25 8 -0.3841 -6.3721 6.5003 26 6 0.7402 -7.3129 -1.4461 27 6 0.8689 -8.5817 -2.2914 28 6 1.5637 -7.2919 -2.7353 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 2.7799 -5.9585 0.8248 34 1 0.0655 -8.4163 1.0009 35 1 -0.2623 -6.6672 0.9603 36 1 2.1818 -7.0831 2.3128 37 1 2.0704 -7.9573 4.8578 38 1 1.7431 -6.2081 4.8254 39 1 0.4085 -9.4935 6.3053 40 1 -1.3888 -8.9016 8.2328 41 1 -1.8149 -6.3186 8.1180 42 1 -0.2206 -6.7981 -1.4541 43 1 1.4967 -9.3837 -1.9033 44 1 -0.0070 -8.9012 -2.8561 45 1 1.1448 -6.7636 -3.5916 46 1 2.6486 -7.2451 -2.6388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690173966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:47 Heat of formation + Delta-G solvation = -25.927780 kcal Electronic energy + Delta-G solvation = -28472.188758 eV Core-core repulsion = 24364.610711 eV Total energy + Delta-G solvation = -4107.578047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.68048 -40.04284 -38.74074 -37.72596 -35.52058 -34.03654 -33.45096 -33.25853 -32.26790 -31.20998 -29.29576 -27.37294 -26.26378 -24.27905 -23.28319 -22.27694 -21.88234 -21.15912 -20.49303 -19.97726 -18.97620 -17.87694 -17.76228 -17.38778 -16.68843 -16.11617 -15.91435 -15.68518 -15.34031 -15.25656 -14.70994 -14.50588 -14.15162 -14.06766 -13.90661 -13.53579 -13.39514 -13.10234 -12.95043 -12.83551 -12.76033 -12.29389 -12.08537 -11.86877 -11.59018 -11.51252 -11.41361 -11.06969 -10.95123 -10.34647 -10.33564 -10.25430 -10.19675 -10.07242 -9.99893 -9.51327 -9.26750 -8.60773 -8.52225 -8.09522 -7.95579 -6.40967 -3.81961 1.56618 2.44391 2.45845 2.76872 3.12070 3.16515 3.27029 3.33959 3.71758 3.91616 4.14045 4.33953 4.39739 4.47248 4.61190 4.78883 4.79438 4.87940 4.98358 5.04431 5.07043 5.07980 5.18600 5.22282 5.28695 5.37133 5.53231 5.63685 5.65531 5.71545 5.75608 5.87376 5.95316 5.98251 6.01565 6.11658 6.18941 6.26539 6.28071 6.36073 7.01034 7.09251 7.23518 7.51190 7.55707 8.01969 8.06780 8.61661 9.18541 9.55199 10.06345 10.76769 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007475 B = 0.003260 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.821594 B = 8587.464688 C =11639.193184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.651 5.651 14 C 0.110 3.890 15 H 0.089 0.911 16 C 0.084 3.916 17 N -0.728 5.728 18 C 0.516 3.484 19 O -0.527 6.527 20 C -0.064 4.064 21 C 0.007 3.993 22 C -0.198 4.198 23 C -0.216 4.216 24 C -0.036 4.036 25 O -0.170 6.170 26 C -0.147 4.147 27 C -0.181 4.181 28 C -0.153 4.153 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.343 0.657 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.202 0.798 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -19.094 7.770 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.282 5.282 14 C -0.001 4.001 15 H 0.107 0.893 16 C -0.041 4.041 17 N -0.382 5.382 18 C 0.301 3.699 19 O -0.403 6.403 20 C -0.104 4.104 21 C -0.044 4.044 22 C -0.217 4.217 23 C -0.235 4.235 24 C -0.104 4.104 25 O -0.065 6.065 26 C -0.166 4.166 27 C -0.219 4.219 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.219 0.781 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.744 -18.721 6.999 20.000 hybrid contribution -0.431 0.736 1.010 1.322 sum -1.174 -17.985 8.009 19.722 Atomic orbital electron populations 1.69625 1.05940 1.28042 1.50617 1.25263 0.95621 0.99722 0.97369 0.85815 0.79699 0.81206 0.77707 1.19218 1.20756 1.20775 1.19732 0.93341 0.82216 1.47509 0.87899 1.41877 1.09194 1.04653 1.64348 1.19796 0.88361 0.84659 0.84427 1.90516 1.13704 1.87110 1.55456 1.21721 0.94496 0.90900 1.01399 1.60202 1.21772 0.99877 1.46361 1.21428 0.94004 0.93066 0.91631 0.89253 1.22144 0.96404 1.02730 0.82851 1.45915 1.12663 1.73837 1.05776 1.20351 0.87787 0.76701 0.85018 1.90753 1.14895 1.47202 1.87436 1.20105 0.95848 1.06748 0.87685 1.21450 0.98437 0.86615 0.97860 1.21494 1.02407 0.98406 0.99418 1.21786 1.03034 0.95962 1.02759 1.24027 0.98579 0.94582 0.93200 1.84022 1.45412 1.37087 1.40011 1.22057 1.00758 1.02300 0.91527 1.23010 1.03250 0.91579 1.04016 1.22808 0.99928 0.99380 0.96907 0.91927 0.77534 0.89324 0.93705 0.83656 0.90918 0.90821 0.76483 0.85782 0.86598 0.83671 0.83510 0.78111 0.87781 0.88967 0.88972 0.88998 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.21 7.83 -10.99 -0.09 10.12 16 11 O -0.58 -15.38 15.89 5.54 0.09 -15.29 16 12 C 0.05 0.80 5.39 -4.98 -0.03 0.78 16 13 N -0.65 -9.23 5.87 -107.99 -0.63 -9.87 16 14 C 0.11 1.18 2.88 -67.71 -0.19 0.99 16 15 H 0.09 0.85 7.94 -51.93 -0.41 0.43 16 16 C 0.08 0.94 4.60 -4.04 -0.02 0.92 16 17 N -0.73 -7.53 5.35 -60.29 -0.32 -7.85 16 18 C 0.52 6.36 7.82 -10.99 -0.09 6.28 16 19 O -0.53 -8.84 16.03 5.56 0.09 -8.75 16 20 C -0.06 -0.60 6.23 -29.04 -0.18 -0.79 16 21 C 0.01 0.09 5.81 -35.63 -0.21 -0.12 16 22 C -0.20 -2.20 10.81 -39.70 -0.43 -2.63 16 23 C -0.22 -2.24 10.91 -39.70 -0.43 -2.67 16 24 C -0.04 -0.38 12.09 29.42 0.36 -0.03 16 25 O -0.17 -2.28 10.65 5.71 0.06 -2.22 16 26 C -0.15 -1.60 4.03 -90.62 -0.36 -1.97 16 27 C -0.18 -1.66 10.18 -26.69 -0.27 -1.93 16 28 C -0.15 -1.70 10.21 -26.69 -0.27 -1.97 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 31 H 0.09 1.44 6.68 -51.93 -0.35 1.10 16 32 H 0.05 0.74 6.68 -51.93 -0.35 0.39 16 33 H 0.34 4.73 7.21 -39.29 -0.28 4.45 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.98 6.78 -51.93 -0.35 0.62 16 36 H 0.40 3.27 7.17 -40.82 -0.29 2.98 16 37 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.20 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.10 1.18 7.68 -51.93 -0.40 0.78 16 43 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 1.22 8.14 -51.92 -0.42 0.79 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -35.46 391.60 -8.12 -43.58 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -6.49 Total: 17.72 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.46 Total: -0.98 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.29 Total: -56.04 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: 0.24 Total: -26.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.46 -8.12 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690173966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.653 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds