Wall clock time and date at job start Tue Mar 31 2020 18:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86806 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46741 * 299.99644 * 3 2 1 6 6 H 1.48498 * 109.47319 * 59.99601 * 3 2 1 7 7 C 1.38942 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00370 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00319 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00442 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00057 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00344 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47189 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99965 * 185.06246 * 13 12 10 15 15 H 1.09007 * 109.47022 * 181.50184 * 14 13 12 16 16 C 1.53000 * 109.47355 * 301.49876 * 14 13 12 17 17 N 1.46505 * 109.47146 * 305.00026 * 16 14 13 18 18 C 1.34776 * 119.99840 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00062 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99847 * 179.72686 * 18 17 16 21 21 C 1.50703 * 109.47176 * 180.27729 * 20 18 17 22 22 C 1.34508 * 125.78986 * 89.71243 * 21 20 18 23 23 C 1.41385 * 106.84032 * 179.88965 * 22 21 20 24 24 C 1.34512 * 106.84048 * 0.37355 * 23 22 21 25 25 O 1.34296 * 125.78659 * 270.02412 * 21 20 18 26 26 C 1.53001 * 109.46859 * 61.50221 * 14 13 12 27 27 C 1.52997 * 117.49680 * 133.77260 * 26 14 13 28 28 C 1.52996 * 117.50276 * 65.10845 * 26 14 13 29 29 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99946 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46473 * 59.99788 * 12 10 9 32 32 H 1.08996 * 109.47242 * 300.00115 * 12 10 9 33 33 H 1.00907 * 110.99544 * 61.11365 * 13 12 10 34 34 H 1.08999 * 109.47424 * 184.99755 * 16 14 13 35 35 H 1.09005 * 109.46698 * 64.99757 * 16 14 13 36 36 H 0.96994 * 119.99939 * 0.02562 * 17 16 14 37 37 H 1.09001 * 109.47309 * 300.27584 * 20 18 17 38 38 H 1.08996 * 109.47549 * 60.27405 * 20 18 17 39 39 H 1.08006 * 126.58329 * 0.02562 * 22 21 20 40 40 H 1.08005 * 126.57806 * 180.16066 * 23 22 21 41 41 H 1.08004 * 125.79127 * 179.74752 * 24 23 22 42 42 H 1.09001 * 115.54765 * 279.43411 * 26 14 13 43 43 H 1.08997 * 117.50548 * 359.97438 * 27 26 14 44 44 H 1.09000 * 117.50032 * 145.02575 * 27 26 14 45 45 H 1.08993 * 117.50432 * 214.97937 * 28 26 14 46 46 H 1.09011 * 117.49409 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9794 0.0004 14 6 1.5022 -7.2673 -0.1201 15 1 2.2302 -8.0781 -0.0913 16 6 0.5171 -7.4250 1.0399 17 7 1.2285 -7.2622 2.3103 18 6 0.5582 -7.3603 3.4754 19 8 -0.6340 -7.5829 3.4722 20 6 1.2911 -7.1990 4.7822 21 6 0.3217 -7.3592 5.9249 22 6 0.0124 -8.5159 6.5377 23 6 -0.9286 -8.2062 7.5465 24 6 -1.1441 -6.8799 7.4844 25 8 -0.3841 -6.3721 6.5003 26 6 0.7402 -7.3129 -1.4461 27 6 0.8689 -8.5817 -2.2914 28 6 1.5637 -7.2919 -2.7353 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6175 -4.9205 0.8913 33 1 2.7799 -5.9585 0.8248 34 1 0.0655 -8.4163 1.0009 35 1 -0.2623 -6.6672 0.9603 36 1 2.1818 -7.0831 2.3128 37 1 2.0704 -7.9573 4.8578 38 1 1.7431 -6.2081 4.8254 39 1 0.4085 -9.4935 6.3053 40 1 -1.3888 -8.9016 8.2328 41 1 -1.8149 -6.3186 8.1180 42 1 -0.2206 -6.7981 -1.4541 43 1 1.4967 -9.3837 -1.9033 44 1 -0.0070 -8.9012 -2.8561 45 1 1.1448 -6.7636 -3.5916 46 1 2.6486 -7.2451 -2.6388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690173966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:46 Heat of formation + Delta-G solvation = -52.626519 kcal Electronic energy + Delta-G solvation = -28473.346503 eV Core-core repulsion = 24364.610711 eV Total energy + Delta-G solvation = -4108.735791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.50482 -41.06365 -40.16703 -39.11698 -36.51927 -35.93496 -34.62912 -34.13256 -33.25752 -33.06841 -30.40899 -28.44721 -27.55594 -26.01092 -24.21752 -23.07349 -22.69760 -22.09785 -21.60498 -21.11571 -20.40303 -19.80344 -18.63482 -18.25063 -18.16219 -17.04257 -16.96679 -16.81860 -16.65815 -16.30374 -16.26448 -15.82596 -15.55797 -15.32416 -15.04992 -14.73502 -14.51553 -14.16497 -14.00242 -13.74404 -13.70353 -13.56562 -13.50293 -13.08197 -12.99353 -12.76874 -12.64962 -12.40179 -12.27145 -12.11715 -11.92082 -11.50708 -11.25733 -11.08969 -10.97961 -10.83386 -10.34918 -10.21511 -10.01164 -9.42638 -9.36002 -8.46425 -5.95300 0.73774 1.36400 1.41412 1.51878 1.55783 1.65654 1.99410 2.05874 2.26562 2.31034 2.77913 3.13595 3.21016 3.57014 3.58946 3.60578 3.82246 3.97334 4.11874 4.13616 4.15912 4.23682 4.25970 4.34635 4.37835 4.41394 4.43745 4.50269 4.55582 4.71301 4.90271 4.91149 4.93298 4.99606 5.15122 5.19800 5.28078 5.35096 5.40288 5.41067 5.61706 5.83521 6.06391 6.19877 6.36201 6.41767 6.59414 7.12211 7.12845 7.56570 8.11103 8.71296 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007475 B = 0.003260 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.821594 B = 8587.464688 C =11639.193184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.577 5.577 10 C 0.442 3.558 11 O -0.617 6.617 12 C 0.068 3.932 13 N -0.658 5.658 14 C 0.122 3.878 15 H 0.114 0.886 16 C 0.090 3.910 17 N -0.717 5.717 18 C 0.514 3.486 19 O -0.578 6.578 20 C -0.059 4.059 21 C -0.020 4.020 22 C -0.207 4.207 23 C -0.226 4.226 24 C -0.049 4.049 25 O -0.200 6.200 26 C -0.163 4.163 27 C -0.155 4.155 28 C -0.168 4.168 29 H 0.276 0.724 30 H 0.393 0.607 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.347 0.653 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.413 0.587 37 H 0.164 0.836 38 H 0.125 0.875 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.231 0.769 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -20.340 8.105 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.064 4.064 13 N -0.290 5.290 14 C 0.012 3.988 15 H 0.132 0.868 16 C -0.035 4.035 17 N -0.371 5.371 18 C 0.301 3.699 19 O -0.457 6.457 20 C -0.098 4.098 21 C -0.070 4.070 22 C -0.226 4.226 23 C -0.245 4.245 24 C -0.116 4.116 25 O -0.096 6.096 26 C -0.182 4.182 27 C -0.192 4.192 28 C -0.205 4.205 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.250 0.750 37 H 0.181 0.819 38 H 0.143 0.857 39 H 0.181 0.819 40 H 0.188 0.812 41 H 0.248 0.752 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.312 -19.988 7.325 21.290 hybrid contribution -0.564 1.039 0.898 1.484 sum -0.876 -18.949 8.223 20.675 Atomic orbital electron populations 1.69694 1.06948 1.29151 1.50640 1.26061 0.96504 1.02523 0.96406 0.84870 0.78157 0.77091 0.78226 1.19494 1.19741 1.19731 1.19701 0.92699 0.83918 1.49590 0.90082 1.41975 1.09213 1.04929 1.65269 1.20817 0.88271 0.85952 0.82046 1.90486 1.15478 1.87928 1.56376 1.21452 0.94156 0.88630 1.02185 1.60176 1.21641 1.00413 1.46742 1.21444 0.94177 0.91699 0.91453 0.86848 1.22033 0.96000 1.02316 0.83186 1.45843 1.13214 1.72836 1.05176 1.20870 0.87291 0.75560 0.86183 1.90728 1.17084 1.49708 1.88159 1.20250 0.95757 1.08617 0.85220 1.21989 0.99305 0.86856 0.98881 1.21879 1.02363 0.98961 0.99365 1.22185 1.02926 0.96393 1.03007 1.24755 0.98518 0.95368 0.92922 1.84002 1.46282 1.38325 1.41038 1.22102 1.00448 1.04170 0.91442 1.23083 1.03156 0.90838 1.02137 1.22785 0.99403 1.01447 0.96894 0.91418 0.77365 0.88401 0.92878 0.83317 0.90289 0.93042 0.74995 0.81886 0.85691 0.81917 0.81201 0.75248 0.88462 0.87330 0.87846 0.89467 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.73 13.05 21.66 0.28 -50.44 16 2 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.58 -29.82 5.29 -306.99 -1.62 -31.44 16 10 C 0.44 20.66 7.83 87.66 0.69 21.34 16 11 O -0.62 -32.95 15.89 -3.08 -0.05 -33.00 16 12 C 0.07 2.29 5.39 85.56 0.46 2.75 16 13 N -0.66 -17.89 5.87 -495.58 -2.91 -20.80 16 14 C 0.12 2.40 2.88 44.92 0.13 2.53 16 15 H 0.11 1.77 7.94 -2.38 -0.02 1.76 16 16 C 0.09 1.90 4.60 86.38 0.40 2.29 16 17 N -0.72 -13.75 5.35 -463.05 -2.48 -16.23 16 18 C 0.51 12.24 7.82 87.66 0.69 12.93 16 19 O -0.58 -19.44 16.03 -3.02 -0.05 -19.49 16 20 C -0.06 -1.04 6.23 29.10 0.18 -0.86 16 21 C -0.02 -0.48 5.81 24.83 0.14 -0.34 16 22 C -0.21 -4.39 10.81 22.19 0.24 -4.15 16 23 C -0.23 -4.44 10.91 22.19 0.24 -4.20 16 24 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 25 O -0.20 -5.39 10.65 -2.48 -0.03 -5.41 16 26 C -0.16 -3.28 4.03 -10.80 -0.04 -3.32 16 27 C -0.15 -2.43 10.18 30.62 0.31 -2.12 16 28 C -0.17 -3.52 10.21 30.62 0.31 -3.21 16 29 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.39 19.75 7.90 -92.71 -0.73 19.02 16 31 H 0.10 3.15 6.68 -2.39 -0.02 3.13 16 32 H 0.05 1.72 6.68 -2.39 -0.02 1.71 16 33 H 0.35 9.07 7.21 -89.69 -0.65 8.42 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.34 6.78 -2.38 -0.02 1.32 16 36 H 0.41 5.88 7.17 -92.71 -0.67 5.22 16 37 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.10 2.10 7.68 -2.39 -0.02 2.09 16 43 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -78.39 391.60 0.01 -78.39 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -1.01 Total: 48.05 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.84 Total: 5.15 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.73 Total: -118.92 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -0.12 Total: -57.90 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.39 0.01 -78.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690173966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.760 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds