Wall clock time and date at job start Tue Mar 31 2020 18:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47285 * 275.68357 * 3 2 1 5 5 H 1.48499 * 109.46831 * 35.68192 * 3 2 1 6 6 H 1.48493 * 109.47356 * 155.68092 * 3 2 1 7 7 C 1.38815 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99792 * 337.76056 * 7 2 1 9 9 N 1.36937 * 120.00599 * 157.76617 * 7 2 1 10 10 C 1.46501 * 119.99668 * 321.42045 * 9 7 2 11 11 C 1.52995 * 109.47126 * 270.00100 * 10 9 7 12 12 N 1.46501 * 109.47126 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00441 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99912 * 180.02562 * 13 12 11 16 16 C 1.52993 * 109.47124 * 179.97438 * 15 13 12 17 17 N 1.46501 * 109.47087 * 179.97438 * 16 15 13 18 18 C 1.34779 * 119.99876 * 180.02562 * 17 16 15 19 19 O 1.21692 * 120.00413 * 359.97438 * 18 17 16 20 20 C 1.46659 * 119.99562 * 179.97438 * 18 17 16 21 21 C 1.36547 * 125.98574 * 179.97438 * 20 18 17 22 22 C 1.40362 * 106.71090 * 180.02562 * 21 20 18 23 23 C 1.35132 * 107.11253 * 359.97438 * 22 21 20 24 24 O 1.33935 * 108.77011 * 0.02562 * 23 22 21 25 25 C 1.46493 * 120.00301 * 141.41950 * 9 7 2 26 26 C 1.53004 * 117.49856 * 3.19316 * 25 9 7 27 27 C 1.53000 * 117.50041 * 294.53153 * 25 9 7 28 28 H 0.97003 * 119.99765 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47384 * 149.99851 * 10 9 7 30 30 H 1.09005 * 109.47261 * 30.00019 * 10 9 7 31 31 H 1.09002 * 109.47500 * 60.00312 * 11 10 9 32 32 H 1.09005 * 109.47270 * 299.99622 * 11 10 9 33 33 H 0.96997 * 120.00137 * 359.97438 * 12 11 10 34 34 H 1.09002 * 109.46731 * 59.99667 * 15 13 12 35 35 H 1.08997 * 109.46697 * 300.00177 * 15 13 12 36 36 H 1.09006 * 109.46859 * 60.00070 * 16 15 13 37 37 H 1.08998 * 109.47577 * 300.00400 * 16 15 13 38 38 H 0.96997 * 120.00137 * 0.02562 * 17 16 15 39 39 H 1.08002 * 126.64192 * 0.02562 * 21 20 18 40 40 H 1.07993 * 126.44385 * 180.02562 * 22 21 20 41 41 H 1.07998 * 125.61440 * 180.26509 * 23 22 21 42 42 H 1.09005 * 115.55138 * 148.86052 * 25 9 7 43 43 H 1.08993 * 117.49511 * 359.97438 * 26 25 9 44 44 H 1.09000 * 117.49441 * 145.01995 * 26 25 9 45 45 H 1.08996 * 117.49981 * 214.97797 * 27 25 9 46 46 H 1.08999 * 117.49988 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3932 5 1 1.5129 2.6150 0.8166 6 1 3.6026 1.4085 0.5765 7 6 2.0103 -1.2022 -0.0005 8 1 1.5305 -2.1028 0.3531 9 7 3.3033 -1.2462 -0.4493 10 6 3.7038 -0.4456 -1.6090 11 6 3.5026 -1.2626 -2.8868 12 7 3.9036 -0.4622 -4.0464 13 6 3.8118 -0.9805 -5.2872 14 8 3.3976 -2.1095 -5.4437 15 6 4.2248 -0.1573 -6.4801 16 6 4.0235 -0.9743 -7.7578 17 7 4.4245 -0.1739 -8.9175 18 6 4.3326 -0.6922 -10.1583 19 8 3.9169 -1.8251 -10.3153 20 6 4.7335 0.1094 -11.3192 21 6 4.6919 -0.2914 -12.6239 22 6 5.1640 0.7844 -13.3918 23 6 5.4688 1.7824 -12.5332 24 8 5.2082 1.3718 -11.2852 25 6 4.2861 -2.0937 0.2303 26 6 3.7896 -2.9623 1.3879 27 6 4.6555 -1.7319 1.6703 28 1 -0.4850 0.8401 0.0004 29 1 4.7543 -0.1704 -1.5153 30 1 3.0945 0.4572 -1.6552 31 1 2.4520 -1.5377 -2.9805 32 1 4.1118 -2.1653 -2.8406 33 1 4.2345 0.4409 -3.9213 34 1 5.2757 0.1166 -6.3861 35 1 3.6167 0.7460 -6.5263 36 1 2.9727 -1.2486 -7.8519 37 1 4.6319 -1.8775 -7.7114 38 1 4.7561 0.7289 -8.7924 39 1 4.3600 -1.2505 -12.9933 40 1 5.2641 0.8101 -14.4668 41 1 5.8548 2.7527 -12.8082 42 1 5.0732 -2.5021 -0.4037 43 1 2.7319 -2.9027 1.6441 44 1 4.2504 -3.9418 1.5156 45 1 5.6854 -1.9026 1.9837 46 1 4.1676 -0.8630 2.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691235135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:24 Heat of formation + Delta-G solvation = -2.980170 kcal Electronic energy + Delta-G solvation = -27434.397086 eV Core-core repulsion = 23327.814123 eV Total energy + Delta-G solvation = -4106.582964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.09933 -39.96780 -39.32939 -37.41203 -35.64282 -34.93224 -33.51637 -33.27750 -31.80884 -31.28896 -30.01885 -27.90394 -25.09090 -24.17268 -22.92977 -22.24364 -22.04261 -21.42780 -20.86182 -20.28279 -19.68456 -18.93048 -17.32567 -16.81750 -16.69084 -16.36096 -16.12764 -15.88295 -15.69738 -15.55641 -15.02522 -14.85970 -14.44421 -13.98778 -13.70760 -13.59495 -13.44173 -13.29972 -13.07076 -12.99155 -12.58301 -12.33582 -12.11420 -11.92022 -11.84145 -11.58115 -10.92233 -10.79093 -10.68986 -10.51304 -10.48982 -10.10288 -9.99330 -9.75786 -9.56683 -9.53447 -9.47056 -9.09731 -8.77238 -8.59451 -6.86292 -6.11438 -3.55862 0.64746 1.92024 2.22415 2.73289 2.75908 2.83507 3.15280 3.35907 3.41156 3.45132 4.22541 4.38739 4.44688 4.46283 4.62621 4.69194 4.80076 4.81439 4.94609 5.17254 5.18254 5.21809 5.32639 5.44091 5.62617 5.68653 5.71480 5.74213 5.75245 5.86521 5.93504 5.97482 6.01392 6.11481 6.36291 6.38417 6.40291 6.53222 6.62935 6.78023 6.88328 7.06826 7.06951 7.67168 7.72056 7.93034 8.30219 8.37457 8.85560 9.57123 9.95652 11.02995 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.001848 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.564326 B =15149.964367 C =15669.637989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.039 3.961 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.273 4.273 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.131 3.869 11 C 0.099 3.901 12 N -0.724 5.724 13 C 0.513 3.487 14 O -0.538 6.538 15 C -0.155 4.155 16 C 0.133 3.867 17 N -0.721 5.721 18 C 0.602 3.398 19 O -0.514 6.514 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.225 4.225 23 C -0.007 4.007 24 O -0.165 6.165 25 C 0.118 3.882 26 C -0.186 4.186 27 C -0.222 4.222 28 H 0.265 0.735 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.405 0.595 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.211 0.789 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 6.795 -21.443 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.402 4.402 8 H 0.102 0.898 9 N -0.286 5.286 10 C 0.005 3.995 11 C -0.026 4.026 12 N -0.375 5.375 13 C 0.297 3.703 14 O -0.415 6.415 15 C -0.196 4.196 16 C 0.010 3.990 17 N -0.372 5.372 18 C 0.388 3.612 19 O -0.391 6.391 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.244 4.244 23 C -0.077 4.077 24 O -0.060 6.060 25 C 0.009 3.991 26 C -0.225 4.225 27 C -0.263 4.263 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.239 0.761 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.227 0.773 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.529 5.383 -21.314 25.813 hybrid contribution 0.692 2.017 -0.006 2.132 sum 14.221 7.400 -21.320 26.675 Atomic orbital electron populations 1.69868 1.05991 1.26903 1.50345 1.25528 0.95106 0.97822 0.97796 0.86954 0.80967 0.84651 0.76911 1.21403 1.22768 1.19032 1.18747 0.85709 0.94582 1.41140 0.89765 1.43499 1.07141 1.50710 1.27268 1.21319 0.98030 0.94263 0.85888 1.22279 1.01571 0.94762 0.83989 1.46088 1.66352 1.18575 1.06534 1.20185 0.78542 0.87378 0.84151 1.90752 1.45751 1.19191 1.85770 1.21820 1.04233 1.00246 0.93271 1.21146 1.02578 0.93671 0.81599 1.45887 1.66492 1.18882 1.05927 1.16507 0.78343 0.85271 0.81126 1.90931 1.46030 1.17200 1.84891 1.22114 1.09907 0.84728 0.96331 1.22025 1.00058 1.00925 0.91050 1.21895 1.07101 0.93961 1.01458 1.24441 1.02028 1.00702 0.80522 1.84057 1.63522 1.27311 1.31148 1.21185 0.94131 0.97063 0.86678 1.23081 1.01102 0.93516 1.04757 1.23384 0.98438 0.99795 1.04692 0.92513 0.93465 0.92234 0.90433 0.92033 0.77036 0.88215 0.88108 0.89851 0.89927 0.76054 0.82117 0.82507 0.77252 0.88969 0.87786 0.90349 0.90746 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.97 55.49 0.78 -25.47 16 2 C 0.04 1.07 5.30 -17.43 -0.09 0.98 16 3 Si 0.88 20.83 25.08 -169.99 -4.26 16.56 16 4 H -0.29 -6.42 6.69 56.52 0.38 -6.04 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.27 -7.24 8.95 -15.06 -0.13 -7.38 16 8 H 0.08 2.44 6.86 -52.49 -0.36 2.08 16 9 N -0.57 -12.67 2.39 -165.66 -0.40 -13.06 16 10 C 0.13 2.56 4.66 -4.04 -0.02 2.54 16 11 C 0.10 1.81 6.00 -4.04 -0.02 1.79 16 12 N -0.72 -10.35 5.56 -60.29 -0.33 -10.68 16 13 C 0.51 7.34 7.83 -10.98 -0.09 7.25 16 14 O -0.54 -10.16 15.98 5.56 0.09 -10.08 16 15 C -0.16 -1.41 5.81 -27.88 -0.16 -1.57 16 16 C 0.13 1.46 4.96 -4.04 -0.02 1.44 16 17 N -0.72 -6.65 5.55 -61.63 -0.34 -6.99 16 18 C 0.60 6.98 7.79 -12.86 -0.10 6.88 16 19 O -0.51 -7.85 16.86 5.20 0.09 -7.77 16 20 C -0.08 -0.76 7.13 -36.79 -0.26 -1.02 16 21 C -0.12 -1.04 10.62 -39.39 -0.42 -1.46 16 22 C -0.23 -1.37 10.87 -39.89 -0.43 -1.80 16 23 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 24 O -0.17 -1.27 10.40 4.99 0.05 -1.22 16 25 C 0.12 2.28 6.56 -67.93 -0.45 1.84 16 26 C -0.19 -3.48 9.80 -26.69 -0.26 -3.74 16 27 C -0.22 -4.09 10.36 -26.69 -0.28 -4.37 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.06 1.26 3.40 -51.93 -0.18 1.09 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.40 2.58 8.23 -40.82 -0.34 2.24 16 39 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.21 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.10 2.20 6.44 -51.93 -0.33 1.86 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -34.95 390.72 -7.45 -42.40 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.62 Total: 8.71 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.38 Total: 1.71 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.30 Total: -56.21 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.23 Total: -19.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.26 Total: 16.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.95 -7.45 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691235135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.415 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds