Wall clock time and date at job start Tue Mar 31 2020 18:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47285 * 275.68357 * 3 2 1 5 5 H 1.48499 * 109.46831 * 35.68192 * 3 2 1 6 6 H 1.48493 * 109.47356 * 155.68092 * 3 2 1 7 7 C 1.38815 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99792 * 337.76056 * 7 2 1 9 9 N 1.36937 * 120.00599 * 157.76617 * 7 2 1 10 10 C 1.46501 * 119.99668 * 321.42045 * 9 7 2 11 11 C 1.52995 * 109.47126 * 270.00100 * 10 9 7 12 12 N 1.46501 * 109.47126 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99876 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00441 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99912 * 180.02562 * 13 12 11 16 16 C 1.52993 * 109.47124 * 179.97438 * 15 13 12 17 17 N 1.46501 * 109.47087 * 179.97438 * 16 15 13 18 18 C 1.34779 * 119.99876 * 180.02562 * 17 16 15 19 19 O 1.21692 * 120.00413 * 359.97438 * 18 17 16 20 20 C 1.46659 * 119.99562 * 179.97438 * 18 17 16 21 21 C 1.36547 * 125.98574 * 179.97438 * 20 18 17 22 22 C 1.40362 * 106.71090 * 180.02562 * 21 20 18 23 23 C 1.35132 * 107.11253 * 359.97438 * 22 21 20 24 24 O 1.33935 * 108.77011 * 0.02562 * 23 22 21 25 25 C 1.46493 * 120.00301 * 141.41950 * 9 7 2 26 26 C 1.53004 * 117.49856 * 3.19316 * 25 9 7 27 27 C 1.53000 * 117.50041 * 294.53153 * 25 9 7 28 28 H 0.97003 * 119.99765 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47384 * 149.99851 * 10 9 7 30 30 H 1.09005 * 109.47261 * 30.00019 * 10 9 7 31 31 H 1.09002 * 109.47500 * 60.00312 * 11 10 9 32 32 H 1.09005 * 109.47270 * 299.99622 * 11 10 9 33 33 H 0.96997 * 120.00137 * 359.97438 * 12 11 10 34 34 H 1.09002 * 109.46731 * 59.99667 * 15 13 12 35 35 H 1.08997 * 109.46697 * 300.00177 * 15 13 12 36 36 H 1.09006 * 109.46859 * 60.00070 * 16 15 13 37 37 H 1.08998 * 109.47577 * 300.00400 * 16 15 13 38 38 H 0.96997 * 120.00137 * 0.02562 * 17 16 15 39 39 H 1.08002 * 126.64192 * 0.02562 * 21 20 18 40 40 H 1.07993 * 126.44385 * 180.02562 * 22 21 20 41 41 H 1.07998 * 125.61440 * 180.26509 * 23 22 21 42 42 H 1.09005 * 115.55138 * 148.86052 * 25 9 7 43 43 H 1.08993 * 117.49511 * 359.97438 * 26 25 9 44 44 H 1.09000 * 117.49441 * 145.01995 * 26 25 9 45 45 H 1.08996 * 117.49981 * 214.97797 * 27 25 9 46 46 H 1.08999 * 117.49988 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3932 5 1 1.5129 2.6150 0.8166 6 1 3.6026 1.4085 0.5765 7 6 2.0103 -1.2022 -0.0005 8 1 1.5305 -2.1028 0.3531 9 7 3.3033 -1.2462 -0.4493 10 6 3.7038 -0.4456 -1.6090 11 6 3.5026 -1.2626 -2.8868 12 7 3.9036 -0.4622 -4.0464 13 6 3.8118 -0.9805 -5.2872 14 8 3.3976 -2.1095 -5.4437 15 6 4.2248 -0.1573 -6.4801 16 6 4.0235 -0.9743 -7.7578 17 7 4.4245 -0.1739 -8.9175 18 6 4.3326 -0.6922 -10.1583 19 8 3.9169 -1.8251 -10.3153 20 6 4.7335 0.1094 -11.3192 21 6 4.6919 -0.2914 -12.6239 22 6 5.1640 0.7844 -13.3918 23 6 5.4688 1.7824 -12.5332 24 8 5.2082 1.3718 -11.2852 25 6 4.2861 -2.0937 0.2303 26 6 3.7896 -2.9623 1.3879 27 6 4.6555 -1.7319 1.6703 28 1 -0.4850 0.8401 0.0004 29 1 4.7543 -0.1704 -1.5153 30 1 3.0945 0.4572 -1.6552 31 1 2.4520 -1.5377 -2.9805 32 1 4.1118 -2.1653 -2.8406 33 1 4.2345 0.4409 -3.9213 34 1 5.2757 0.1166 -6.3861 35 1 3.6167 0.7460 -6.5263 36 1 2.9727 -1.2486 -7.8519 37 1 4.6319 -1.8775 -7.7114 38 1 4.7561 0.7289 -8.7924 39 1 4.3600 -1.2505 -12.9933 40 1 5.2641 0.8101 -14.4668 41 1 5.8548 2.7527 -12.8082 42 1 5.0732 -2.5021 -0.4037 43 1 2.7319 -2.9027 1.6441 44 1 4.2504 -3.9418 1.5156 45 1 5.6854 -1.9026 1.9837 46 1 4.1676 -0.8630 2.1119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691235135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:23 Heat of formation + Delta-G solvation = -30.329002 kcal Electronic energy + Delta-G solvation = -27435.583021 eV Core-core repulsion = 23327.814123 eV Total energy + Delta-G solvation = -4107.768898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64223 -41.00903 -40.40693 -39.03025 -36.66540 -36.25268 -34.97601 -34.06324 -33.37059 -32.47560 -30.73548 -29.39190 -26.44810 -25.60076 -24.01901 -23.33182 -22.91349 -22.66762 -21.76273 -21.47301 -21.20306 -19.65269 -18.64090 -17.95257 -17.54101 -17.46503 -17.35649 -17.16055 -16.93967 -16.68591 -16.39300 -16.01694 -15.50850 -15.25340 -15.11833 -14.65638 -14.52080 -14.20278 -14.14744 -14.07150 -13.94145 -13.56443 -13.52512 -13.33893 -12.99541 -12.67624 -12.54160 -12.49940 -12.09911 -11.82967 -11.73545 -11.64749 -11.32515 -11.06582 -11.06065 -10.92762 -10.64048 -10.41575 -10.07617 -9.65754 -8.69166 -8.21451 -5.63512 -0.00180 1.26686 1.42138 1.42796 1.53990 1.54378 1.62566 1.95818 2.04464 2.37710 2.41138 3.02619 3.23806 3.32977 3.54130 3.76414 3.94269 3.96357 4.02778 4.12791 4.13113 4.21694 4.27982 4.38381 4.48406 4.48862 4.58817 4.60805 4.78778 4.83294 4.91734 4.92604 4.95439 4.95929 5.03109 5.13159 5.15598 5.30194 5.38770 5.45378 5.53906 5.80917 5.92616 6.19489 6.35518 6.56596 6.93581 6.95472 7.26947 7.58881 7.97996 8.97519 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.001848 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.564326 B =15149.964367 C =15669.637989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.023 4.023 3 Si 0.945 3.055 4 H -0.259 1.259 5 H -0.314 1.314 6 H -0.252 1.252 7 C -0.259 4.259 8 H 0.039 0.961 9 N -0.582 5.582 10 C 0.132 3.868 11 C 0.116 3.884 12 N -0.713 5.713 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.135 4.135 16 C 0.138 3.862 17 N -0.702 5.702 18 C 0.598 3.402 19 O -0.565 6.565 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.237 4.237 23 C 0.015 3.985 24 O -0.167 6.167 25 C 0.102 3.898 26 C -0.193 4.193 27 C -0.205 4.205 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.417 0.583 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.422 0.578 39 H 0.154 0.846 40 H 0.182 0.818 41 H 0.258 0.742 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.452 9.996 -23.005 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.220 4.220 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.243 1.243 6 H -0.176 1.176 7 C -0.389 4.389 8 H 0.057 0.943 9 N -0.302 5.302 10 C 0.006 3.994 11 C -0.011 4.011 12 N -0.366 5.366 13 C 0.296 3.704 14 O -0.472 6.472 15 C -0.175 4.175 16 C 0.014 3.986 17 N -0.354 5.354 18 C 0.386 3.614 19 O -0.446 6.446 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.255 4.255 23 C -0.054 4.054 24 O -0.062 6.062 25 C -0.005 4.005 26 C -0.231 4.231 27 C -0.245 4.245 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.254 0.746 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.260 0.740 39 H 0.172 0.828 40 H 0.199 0.801 41 H 0.273 0.727 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.747 8.647 -22.876 30.217 hybrid contribution -0.577 0.934 0.406 1.170 sum 17.170 9.581 -22.470 29.858 Atomic orbital electron populations 1.70024 1.07997 1.27596 1.53443 1.26219 0.95717 1.01720 0.98352 0.85824 0.79530 0.79347 0.78042 1.18554 1.24278 1.17556 1.18523 0.87552 0.93051 1.39726 0.94327 1.43595 1.06252 1.51569 1.28750 1.21395 0.99857 0.93152 0.84967 1.21770 0.98671 0.95253 0.85364 1.45876 1.66039 1.19172 1.05510 1.21082 0.77096 0.87061 0.85171 1.90743 1.48025 1.21933 1.86507 1.21751 1.07254 0.99444 0.89035 1.20918 1.00531 0.93911 0.83278 1.45658 1.65635 1.19333 1.04780 1.16815 0.77578 0.84910 0.82129 1.90894 1.48516 1.19459 1.85744 1.21678 1.12759 0.85943 0.95665 1.22278 0.99573 1.01586 0.91463 1.22225 1.07270 0.93216 1.02829 1.25419 0.99056 1.01742 0.79182 1.84048 1.63461 1.26173 1.32511 1.21541 0.94375 0.96998 0.87548 1.23059 0.99502 0.95568 1.04954 1.23356 0.99947 0.98196 1.03048 0.92797 0.89367 0.93660 0.95303 0.92191 0.74612 0.83972 0.84972 0.92705 0.91966 0.73983 0.82787 0.80071 0.72657 0.85603 0.91553 0.87141 0.86832 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.97 21.65 0.30 -58.22 16 2 C -0.02 -1.33 5.30 84.86 0.45 -0.88 16 3 Si 0.95 43.05 25.08 68.60 1.72 44.77 16 4 H -0.26 -10.57 6.69 99.48 0.67 -9.91 16 5 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 6 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.26 -14.23 8.95 84.03 0.75 -13.48 16 8 H 0.04 2.43 6.86 -2.91 -0.02 2.41 16 9 N -0.58 -25.66 2.39 -678.03 -1.62 -27.29 16 10 C 0.13 4.85 4.66 86.38 0.40 5.25 16 11 C 0.12 4.17 6.00 86.38 0.52 4.69 16 12 N -0.71 -18.77 5.56 -463.05 -2.57 -21.34 16 13 C 0.51 13.90 7.83 87.66 0.69 14.58 16 14 O -0.59 -22.94 15.98 -3.02 -0.05 -22.99 16 15 C -0.14 -2.05 5.81 29.85 0.17 -1.88 16 16 C 0.14 2.98 4.96 86.38 0.43 3.41 16 17 N -0.70 -12.24 5.55 -467.10 -2.59 -14.84 16 18 C 0.60 14.12 7.79 86.44 0.67 14.79 16 19 O -0.57 -18.43 16.86 -4.32 -0.07 -18.50 16 20 C -0.11 -2.03 7.13 24.07 0.17 -1.86 16 21 C -0.13 -2.15 10.62 22.39 0.24 -1.92 16 22 C -0.24 -2.26 10.87 22.07 0.24 -2.02 16 23 C 0.02 0.10 12.08 67.10 0.81 0.91 16 24 O -0.17 -2.12 10.40 -5.07 -0.05 -2.17 16 25 C 0.10 3.77 6.56 44.99 0.30 4.07 16 26 C -0.19 -7.06 9.80 30.62 0.30 -6.76 16 27 C -0.21 -7.04 10.36 30.62 0.32 -6.72 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 29 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 30 H 0.05 1.81 3.40 -2.38 -0.01 1.80 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.42 7.58 8.47 -92.71 -0.79 6.80 16 34 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.51 8.10 -2.38 -0.02 1.49 16 37 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.42 4.24 8.23 -92.71 -0.76 3.48 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.26 -0.96 8.06 -2.91 -0.02 -0.98 16 42 H 0.13 3.81 8.14 -2.38 -0.02 3.79 16 43 H 0.07 2.94 6.44 -2.39 -0.02 2.93 16 44 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 46 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -85.19 390.72 0.95 -84.24 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.57 Total: 24.14 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.46 Total: 12.20 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -6.49 Total: -121.69 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.17 Total: -43.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.72 Total: 44.77 kcal Total: -85.19 0.95 -84.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691235135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.916 kcal (2) G-P(sol) polarization free energy of solvation -85.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds