Wall clock time and date at job start Tue Mar 31 2020 19:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99563 * 3 2 1 5 5 H 1.48499 * 109.47386 * 29.99817 * 3 2 1 6 6 H 1.48502 * 109.46883 * 149.99931 * 3 2 1 7 7 C 1.38945 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00667 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99786 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46822 * 179.97438 * 12 10 9 14 14 C 1.47957 * 111.00083 * 189.99822 * 13 12 10 15 15 C 1.53934 * 86.18368 * 222.42252 * 14 13 12 16 16 N 1.46499 * 113.73638 * 138.08324 * 15 14 13 17 17 C 1.34777 * 120.00199 * 156.90131 * 16 15 14 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 15 20 20 H 1.09002 * 110.66675 * 61.48355 * 19 17 16 21 21 C 1.55002 * 110.74539 * 298.26539 * 19 17 16 22 22 C 1.55813 * 102.78863 * 241.67326 * 21 19 17 23 23 H 1.09004 * 115.38773 * 158.11357 * 22 21 19 24 24 O 1.46541 * 101.24306 * 32.42301 * 22 21 19 25 25 C 1.46528 * 99.67846 * 305.83704 * 24 22 21 26 26 H 1.09007 * 115.67965 * 179.65610 * 25 24 22 27 27 C 1.55814 * 101.25072 * 305.83811 * 25 24 22 28 28 H 1.08997 * 118.20351 * 171.69245 * 27 25 24 29 29 C 1.53004 * 117.23892 * 328.40036 * 27 25 24 30 30 C 1.55008 * 102.78526 * 32.41922 * 27 25 24 31 31 H 1.09005 * 123.14491 * 136.62478 * 30 27 25 32 32 C 1.48196 * 111.06756 * 90.56998 * 13 12 10 33 33 H 0.97000 * 120.00057 * 0.02562 * 1 2 3 34 34 H 0.97002 * 119.99980 * 0.02562 * 9 7 2 35 35 H 1.08997 * 109.47048 * 60.00541 * 12 10 9 36 36 H 1.09001 * 109.47208 * 299.99974 * 12 10 9 37 37 H 1.09004 * 113.75920 * 108.10457 * 14 13 12 38 38 H 1.08997 * 113.75820 * 336.73778 * 14 13 12 39 39 H 1.09003 * 113.73130 * 269.25595 * 15 14 13 40 40 H 0.97000 * 119.99484 * 336.89228 * 16 15 14 41 41 H 1.09002 * 110.75046 * 0.02562 * 21 19 17 42 42 H 1.09002 * 110.74392 * 123.35267 * 21 19 17 43 43 H 1.09001 * 117.41221 * 196.95365 * 29 27 25 44 44 H 1.09003 * 117.41118 * 341.46662 * 29 27 25 45 45 H 1.08998 * 113.75984 * 23.23247 * 32 13 12 46 46 H 1.09006 * 113.82067 * 251.80781 * 32 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0505 -3.7554 0.0040 14 6 7.5098 -3.8015 0.2438 15 6 7.5539 -4.8712 -0.8623 16 7 8.6804 -4.7179 -1.7862 17 6 9.1260 -5.7791 -2.4875 18 8 8.5947 -6.8610 -2.3532 19 6 10.2888 -5.6227 -3.4333 20 1 11.1838 -5.3116 -2.8945 21 6 9.9480 -4.6146 -4.5604 22 6 10.0512 -5.4877 -5.8468 23 1 9.5070 -5.1104 -6.7126 24 8 9.6156 -6.7927 -5.3421 25 6 10.5435 -6.9444 -4.2183 26 1 10.4364 -7.8608 -3.6377 27 6 11.9160 -6.7440 -4.9280 28 1 12.8096 -6.6660 -4.3088 29 6 12.0253 -7.2026 -6.3836 30 6 11.5754 -5.7359 -6.0552 31 1 12.2070 -4.8826 -6.3026 32 6 6.2411 -4.2549 -1.3782 33 1 -0.4850 0.8400 -0.0004 34 1 3.8648 -0.3632 0.0014 35 1 5.9241 -1.8558 0.8917 36 1 5.9241 -1.8573 -0.8883 37 1 7.7810 -4.1782 1.2301 38 1 8.0271 -2.8784 -0.0172 39 1 7.4442 -5.8903 -0.4916 40 1 9.1054 -3.8526 -1.8934 41 1 8.9374 -4.2251 -4.4376 42 1 10.6752 -3.8030 -4.5852 43 1 13.0263 -7.3320 -6.7952 44 1 11.2754 -7.9060 -6.7458 45 1 6.3865 -3.4646 -2.1146 46 1 5.5003 -4.9932 -1.6855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692214752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:28 Heat of formation + Delta-G solvation = -10.958740 kcal Electronic energy + Delta-G solvation = -28506.648799 eV Core-core repulsion = 24399.719858 eV Total energy + Delta-G solvation = -4106.928941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97379 -40.43642 -38.93951 -37.82314 -34.58096 -34.30545 -33.87243 -32.52524 -31.66239 -30.00329 -29.71000 -26.18942 -25.90552 -24.72247 -23.62335 -22.81318 -20.93011 -20.76165 -20.36403 -19.95173 -19.37689 -18.38151 -17.71562 -17.13268 -16.78801 -16.32237 -16.15607 -15.45188 -15.12957 -15.00746 -14.85836 -14.58569 -14.33424 -13.85554 -13.50639 -13.30611 -13.05313 -12.91575 -12.85527 -12.74971 -12.46111 -12.30883 -12.17901 -11.96536 -11.75792 -11.68824 -11.61296 -11.33065 -11.19436 -10.77739 -10.65939 -10.60512 -10.42625 -10.15056 -9.96922 -9.96075 -9.55724 -9.27544 -8.87789 -8.32335 -8.16610 -6.29755 -3.81150 2.36596 2.71938 3.01092 3.04383 3.05165 3.13863 3.33513 3.74193 3.83706 3.96107 4.07213 4.10139 4.11064 4.26392 4.34642 4.36604 4.50852 4.63170 4.68805 4.73178 4.75805 4.86636 5.03968 5.08997 5.10005 5.20076 5.26161 5.31238 5.32553 5.38068 5.48329 5.50064 5.52087 5.56517 5.61517 5.76374 5.79961 5.91573 6.04037 6.08530 6.26114 6.41728 6.97533 7.21720 7.59140 7.97572 8.15762 8.61734 8.97004 9.43610 9.85521 10.83560 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002042 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.393578 B =13707.970333 C =14182.010510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.454 3.546 11 O -0.554 6.554 12 C 0.010 3.990 13 N -0.445 5.445 14 C -0.008 4.008 15 C 0.118 3.882 16 N -0.722 5.722 17 C 0.525 3.475 18 O -0.526 6.526 19 C -0.137 4.137 20 H 0.111 0.889 21 C -0.136 4.136 22 C 0.089 3.911 23 H 0.134 0.866 24 O -0.360 6.360 25 C 0.116 3.884 26 H 0.140 0.860 27 C -0.195 4.195 28 H 0.122 0.878 29 C -0.132 4.132 30 C -0.200 4.200 31 H 0.125 0.875 32 C -0.001 4.001 33 H 0.273 0.727 34 H 0.369 0.631 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.399 0.601 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.864 -5.455 -9.996 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.435 6.435 12 C -0.122 4.122 13 N -0.167 5.167 14 C -0.137 4.137 15 C 0.013 3.987 16 N -0.373 5.373 17 C 0.311 3.689 18 O -0.401 6.401 19 C -0.158 4.158 20 H 0.129 0.871 21 C -0.174 4.174 22 C 0.031 3.969 23 H 0.152 0.848 24 O -0.279 6.279 25 C 0.058 3.942 26 H 0.158 0.842 27 C -0.213 4.213 28 H 0.140 0.860 29 C -0.168 4.168 30 C -0.218 4.218 31 H 0.143 0.857 32 C -0.130 4.130 33 H 0.083 0.917 34 H 0.202 0.798 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 29.178 -7.323 -9.502 31.548 hybrid contribution 1.475 2.852 -0.361 3.231 sum 30.653 -4.471 -9.863 32.509 Atomic orbital electron populations 1.69625 1.05606 1.27419 1.49593 1.25039 0.95500 0.97926 0.97815 0.86666 0.79752 0.84133 0.78769 1.19721 1.20181 1.19579 1.19429 0.79225 0.96630 1.47911 0.86297 1.42216 1.07519 1.06044 1.67659 1.19565 0.87860 0.84596 0.84038 1.90580 1.69204 1.30893 1.52780 1.22503 0.96691 0.91068 1.01956 1.68397 1.11442 1.18316 1.18576 1.24417 0.91180 0.97864 1.00279 1.23055 0.84875 1.01456 0.89300 1.46057 1.35162 1.12181 1.43913 1.20311 0.84087 0.84223 0.80267 1.90741 1.58177 1.26276 1.64939 1.22963 0.97934 0.98455 0.96481 0.87093 1.23199 1.03345 0.97571 0.93240 1.24240 0.91839 0.84309 0.96533 0.84806 1.90199 1.56102 1.36099 1.45477 1.24019 0.85766 0.97349 0.87073 0.84218 1.24336 0.99109 1.05902 0.91976 0.86043 1.23403 1.02437 0.95221 0.95788 1.24963 0.96964 0.94020 1.05856 0.85736 1.24530 0.97046 1.00034 0.91435 0.91651 0.79848 0.89177 0.92359 0.88392 0.91091 0.85712 0.76693 0.89776 0.89397 0.87952 0.87909 0.91152 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 3 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.67 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 9 N -0.59 -14.25 5.09 -10.97 -0.06 -14.31 16 10 C 0.45 10.48 7.83 -10.98 -0.09 10.39 16 11 O -0.55 -15.39 16.01 5.55 0.09 -15.30 16 12 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 13 N -0.44 -6.96 5.65 -239.66 -1.35 -8.31 16 14 C -0.01 -0.08 7.70 -2.76 -0.02 -0.10 16 15 C 0.12 1.36 4.39 -69.63 -0.31 1.05 16 16 N -0.72 -6.33 5.29 -54.94 -0.29 -6.62 16 17 C 0.53 5.56 7.01 -10.98 -0.08 5.48 16 18 O -0.53 -7.98 15.51 5.55 0.09 -7.89 16 19 C -0.14 -0.99 2.89 -89.21 -0.26 -1.25 16 20 H 0.11 0.53 8.04 -51.93 -0.42 0.11 16 21 C -0.14 -0.83 6.12 -24.17 -0.15 -0.97 16 22 C 0.09 0.65 5.67 -23.72 -0.13 0.51 16 23 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 24 O -0.36 -3.98 10.82 -35.23 -0.38 -4.37 16 25 C 0.12 1.02 4.59 -23.73 -0.11 0.91 16 26 H 0.14 1.35 7.71 -51.93 -0.40 0.95 16 27 C -0.19 -1.22 6.50 -88.06 -0.57 -1.80 16 28 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 29 C -0.13 -0.82 9.98 -24.62 -0.25 -1.07 16 30 C -0.20 -1.17 6.79 -85.95 -0.58 -1.75 16 31 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 32 C 0.00 -0.01 7.77 -2.63 -0.02 -0.03 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 35 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 39 H 0.13 1.67 7.51 -51.93 -0.39 1.28 16 40 H 0.40 2.28 8.71 -40.82 -0.36 1.92 16 41 H 0.08 0.59 7.74 -51.93 -0.40 0.18 16 42 H 0.09 0.33 8.03 -51.93 -0.42 -0.09 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.78 7.72 -51.93 -0.40 0.38 16 45 H 0.07 0.90 7.49 -51.93 -0.39 0.52 16 46 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -37.25 375.59 -9.74 -46.98 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.71 Total: 11.04 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.84 Total: 3.70 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.93 Total: -54.45 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.21 Total: -27.56 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.25 -9.74 -46.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692214752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.024 kcal (2) G-P(sol) polarization free energy of solvation -37.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds