Wall clock time and date at job start Tue Mar 31 2020 19:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48500 * 109.47072 * 269.99563 * 3 2 1 5 5 H 1.48499 * 109.47386 * 29.99817 * 3 2 1 6 6 H 1.48502 * 109.46883 * 149.99931 * 3 2 1 7 7 C 1.38945 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00667 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99786 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46822 * 179.97438 * 12 10 9 14 14 C 1.47957 * 111.00083 * 189.99822 * 13 12 10 15 15 C 1.53934 * 86.18368 * 222.42252 * 14 13 12 16 16 N 1.46499 * 113.73638 * 138.08324 * 15 14 13 17 17 C 1.34777 * 120.00199 * 156.90131 * 16 15 14 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 15 20 20 H 1.09002 * 110.66675 * 61.48355 * 19 17 16 21 21 C 1.55002 * 110.74539 * 298.26539 * 19 17 16 22 22 C 1.55813 * 102.78863 * 241.67326 * 21 19 17 23 23 H 1.09004 * 115.38773 * 158.11357 * 22 21 19 24 24 O 1.46541 * 101.24306 * 32.42301 * 22 21 19 25 25 C 1.46528 * 99.67846 * 305.83704 * 24 22 21 26 26 H 1.09007 * 115.67965 * 179.65610 * 25 24 22 27 27 C 1.55814 * 101.25072 * 305.83811 * 25 24 22 28 28 H 1.08997 * 118.20351 * 171.69245 * 27 25 24 29 29 C 1.53004 * 117.23892 * 328.40036 * 27 25 24 30 30 C 1.55008 * 102.78526 * 32.41922 * 27 25 24 31 31 H 1.09005 * 123.14491 * 136.62478 * 30 27 25 32 32 C 1.48196 * 111.06756 * 90.56998 * 13 12 10 33 33 H 0.97000 * 120.00057 * 0.02562 * 1 2 3 34 34 H 0.97002 * 119.99980 * 0.02562 * 9 7 2 35 35 H 1.08997 * 109.47048 * 60.00541 * 12 10 9 36 36 H 1.09001 * 109.47208 * 299.99974 * 12 10 9 37 37 H 1.09004 * 113.75920 * 108.10457 * 14 13 12 38 38 H 1.08997 * 113.75820 * 336.73778 * 14 13 12 39 39 H 1.09003 * 113.73130 * 269.25595 * 15 14 13 40 40 H 0.97000 * 119.99484 * 336.89228 * 16 15 14 41 41 H 1.09002 * 110.75046 * 0.02562 * 21 19 17 42 42 H 1.09002 * 110.74392 * 123.35267 * 21 19 17 43 43 H 1.09001 * 117.41221 * 196.95365 * 29 27 25 44 44 H 1.09003 * 117.41118 * 341.46662 * 29 27 25 45 45 H 1.08998 * 113.75984 * 23.23247 * 32 13 12 46 46 H 1.09006 * 113.82067 * 251.80781 * 32 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0505 -3.7554 0.0040 14 6 7.5098 -3.8015 0.2438 15 6 7.5539 -4.8712 -0.8623 16 7 8.6804 -4.7179 -1.7862 17 6 9.1260 -5.7791 -2.4875 18 8 8.5947 -6.8610 -2.3532 19 6 10.2888 -5.6227 -3.4333 20 1 11.1838 -5.3116 -2.8945 21 6 9.9480 -4.6146 -4.5604 22 6 10.0512 -5.4877 -5.8468 23 1 9.5070 -5.1104 -6.7126 24 8 9.6156 -6.7927 -5.3421 25 6 10.5435 -6.9444 -4.2183 26 1 10.4364 -7.8608 -3.6377 27 6 11.9160 -6.7440 -4.9280 28 1 12.8096 -6.6660 -4.3088 29 6 12.0253 -7.2026 -6.3836 30 6 11.5754 -5.7359 -6.0552 31 1 12.2070 -4.8826 -6.3026 32 6 6.2411 -4.2549 -1.3782 33 1 -0.4850 0.8400 -0.0004 34 1 3.8648 -0.3632 0.0014 35 1 5.9241 -1.8558 0.8917 36 1 5.9241 -1.8573 -0.8883 37 1 7.7810 -4.1782 1.2301 38 1 8.0271 -2.8784 -0.0172 39 1 7.4442 -5.8903 -0.4916 40 1 9.1054 -3.8526 -1.8934 41 1 8.9374 -4.2251 -4.4376 42 1 10.6752 -3.8030 -4.5852 43 1 13.0263 -7.3320 -6.7952 44 1 11.2754 -7.9060 -6.7458 45 1 6.3865 -3.4646 -2.1146 46 1 5.5003 -4.9932 -1.6855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692214752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:27 Heat of formation + Delta-G solvation = -43.577450 kcal Electronic energy + Delta-G solvation = -28508.063252 eV Core-core repulsion = 24399.719858 eV Total energy + Delta-G solvation = -4108.343394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56628 -41.46544 -40.16104 -39.35703 -36.01189 -35.21881 -35.04658 -33.76795 -33.19930 -31.10619 -30.37752 -27.46495 -27.15451 -25.79136 -24.58035 -23.64549 -21.53327 -21.43071 -21.28905 -21.11760 -20.66196 -20.25933 -18.37476 -17.94441 -17.74610 -17.62312 -17.02208 -16.75421 -16.54916 -16.17163 -15.96574 -15.47584 -15.23860 -15.17249 -14.84949 -14.61352 -14.32923 -14.08414 -13.74257 -13.72870 -13.59692 -13.39752 -13.07631 -12.90582 -12.73573 -12.49955 -12.41974 -12.34989 -12.26248 -12.10863 -11.98180 -11.86557 -11.50691 -11.22210 -11.03056 -10.74055 -10.61840 -10.47197 -10.25199 -10.15445 -9.70462 -8.41298 -6.02928 1.29408 1.36127 1.45357 1.56033 1.96132 1.97706 2.23581 2.57338 2.65447 2.80050 3.13305 3.15077 3.37417 3.49042 3.53977 3.60455 3.77117 3.79754 3.89461 3.97871 4.07135 4.17005 4.18299 4.20872 4.29337 4.35841 4.40308 4.45237 4.60694 4.66911 4.69690 4.78942 4.82697 4.88778 4.92628 4.97058 4.98577 5.15715 5.31219 5.34238 5.41440 5.53466 5.56945 5.88476 5.99789 6.51756 6.59903 6.88696 7.23477 7.39918 7.99297 8.76782 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002042 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.393578 B =13707.970333 C =14182.010510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.020 4.020 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.227 1.227 7 C -0.330 4.330 8 H 0.049 0.951 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.024 3.976 13 N -0.489 5.489 14 C 0.015 3.985 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.520 3.480 18 O -0.583 6.583 19 C -0.125 4.125 20 H 0.149 0.851 21 C -0.127 4.127 22 C 0.073 3.927 23 H 0.139 0.861 24 O -0.405 6.405 25 C 0.100 3.900 26 H 0.115 0.885 27 C -0.189 4.189 28 H 0.146 0.854 29 C -0.145 4.145 30 C -0.184 4.184 31 H 0.154 0.846 32 C -0.006 4.006 33 H 0.279 0.721 34 H 0.391 0.609 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.420 0.580 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.287 -1.114 -10.089 37.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.218 4.218 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.150 1.150 7 C -0.459 4.459 8 H 0.067 0.933 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.107 4.107 13 N -0.213 5.213 14 C -0.114 4.114 15 C 0.022 3.978 16 N -0.354 5.354 17 C 0.307 3.693 18 O -0.463 6.463 19 C -0.146 4.146 20 H 0.166 0.834 21 C -0.164 4.164 22 C 0.016 3.984 23 H 0.156 0.844 24 O -0.325 6.325 25 C 0.042 3.958 26 H 0.133 0.867 27 C -0.207 4.207 28 H 0.163 0.837 29 C -0.182 4.182 30 C -0.201 4.201 31 H 0.171 0.829 32 C -0.136 4.136 33 H 0.088 0.912 34 H 0.226 0.774 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.258 0.742 41 H 0.092 0.908 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 34.661 -2.948 -9.595 36.085 hybrid contribution -0.354 1.295 -0.370 1.392 sum 34.307 -1.653 -9.965 35.763 Atomic orbital electron populations 1.69825 1.08293 1.29287 1.50371 1.26212 0.96548 1.02986 0.96027 0.85299 0.79541 0.76222 0.80002 1.17991 1.20105 1.15026 1.18979 0.81683 0.94784 1.50477 0.93269 1.42022 1.05678 1.07575 1.68143 1.21057 0.91140 0.83202 0.81031 1.90559 1.71478 1.33138 1.54649 1.22457 0.90468 0.92384 1.05416 1.68293 1.15353 1.18371 1.19239 1.24458 0.87839 0.98874 1.00199 1.22635 0.84570 1.00495 0.90063 1.45821 1.33963 1.12905 1.42706 1.21039 0.84478 0.83556 0.80191 1.90729 1.60149 1.28649 1.66726 1.22976 0.97503 0.98020 0.96090 0.83381 1.23221 1.03947 0.97753 0.91496 1.24556 0.93156 0.83240 0.97450 0.84389 1.90165 1.57465 1.38302 1.46547 1.24078 0.87199 0.97434 0.87103 0.86717 1.24307 0.98273 1.06202 0.91898 0.83656 1.23473 1.02856 0.95626 0.96243 1.25032 0.95984 0.94336 1.04784 0.82884 1.24523 0.97378 0.99964 0.91771 0.91158 0.77354 0.85618 0.88398 0.87368 0.86704 0.88602 0.74150 0.90805 0.85533 0.85911 0.90399 0.89128 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.96 21.66 0.30 -56.99 16 2 C -0.02 -1.10 5.50 84.92 0.47 -0.63 16 3 Si 0.97 38.33 27.74 68.60 1.90 40.23 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.35 6.52 99.48 0.65 -6.71 16 7 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 8 H 0.05 3.54 7.39 -2.91 -0.02 3.52 16 9 N -0.59 -28.03 5.09 -306.99 -1.56 -29.60 16 10 C 0.45 20.64 7.83 87.66 0.69 21.33 16 11 O -0.61 -36.00 16.01 -3.06 -0.05 -36.05 16 12 C 0.02 0.71 5.28 85.56 0.45 1.16 16 13 N -0.49 -14.48 5.65 -912.15 -5.15 -19.63 16 14 C 0.01 0.25 7.70 86.41 0.67 0.92 16 15 C 0.13 2.80 4.39 46.55 0.20 3.01 16 16 N -0.70 -10.52 5.29 -446.12 -2.36 -12.88 16 17 C 0.52 10.55 7.01 87.66 0.61 11.17 16 18 O -0.58 -18.69 15.51 -3.04 -0.05 -18.73 16 19 C -0.12 -1.51 2.89 -9.88 -0.03 -1.54 16 20 H 0.15 0.70 8.04 -2.39 -0.02 0.68 16 21 C -0.13 -1.12 6.12 32.25 0.20 -0.92 16 22 C 0.07 0.95 5.67 32.54 0.18 1.14 16 23 H 0.14 1.54 8.14 -2.38 -0.02 1.52 16 24 O -0.41 -9.28 10.82 -148.98 -1.61 -10.89 16 25 C 0.10 1.73 4.59 32.54 0.15 1.88 16 26 H 0.12 2.45 7.71 -2.38 -0.02 2.43 16 27 C -0.19 -1.95 6.50 -9.13 -0.06 -2.01 16 28 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 29 C -0.15 -1.62 9.98 31.96 0.32 -1.30 16 30 C -0.18 -1.59 6.79 -7.77 -0.05 -1.64 16 31 H 0.15 0.50 8.14 -2.38 -0.02 0.48 16 32 C -0.01 -0.18 7.77 86.36 0.67 0.49 16 33 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.39 14.87 5.76 -92.71 -0.53 14.33 16 35 H 0.13 2.80 8.08 -2.39 -0.02 2.79 16 36 H 0.10 2.11 7.39 -2.39 -0.02 2.09 16 37 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.12 1.03 7.89 -2.39 -0.02 1.01 16 39 H 0.10 2.69 7.51 -2.39 -0.02 2.67 16 40 H 0.42 2.74 8.71 -92.71 -0.81 1.94 16 41 H 0.07 0.83 7.74 -2.39 -0.02 0.81 16 42 H 0.13 0.18 8.03 -2.39 -0.02 0.16 16 43 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.25 7.72 -2.39 -0.02 1.23 16 45 H 0.09 2.13 7.49 -2.39 -0.02 2.11 16 46 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -94.58 375.59 -3.63 -98.21 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.37 Total: 32.12 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.32 Total: 14.21 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -8.77 Total: -119.09 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.71 Total: -65.68 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -94.58 -3.63 -98.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692214752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.633 kcal (2) G-P(sol) polarization free energy of solvation -94.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds