Wall clock time and date at job start Tue Mar 31 2020 18:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86791 * 120.00562 * 2 1 4 4 H 1.48500 * 109.47215 * 240.00415 * 3 2 1 5 5 H 1.48502 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47513 * 120.00101 * 3 2 1 7 7 C 1.38949 * 119.99357 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00042 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99745 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46959 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99880 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47401 * 325.00504 * 14 13 12 16 16 C 1.53000 * 109.46769 * 85.00797 * 14 13 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46963 * 299.99499 * 17 16 14 19 19 H 1.09002 * 109.47067 * 300.00341 * 18 17 16 20 20 N 1.46496 * 109.47313 * 180.02562 * 18 17 16 21 21 C 1.34773 * 120.00354 * 84.99862 * 20 18 17 22 22 O 1.21612 * 119.99766 * 0.02562 * 21 20 18 23 23 C 1.47386 * 120.00169 * 179.97438 * 21 20 18 24 24 C 1.47019 * 127.18796 * 179.70750 * 23 21 20 25 25 C 1.34177 * 105.95063 * 179.89287 * 24 23 21 26 26 O 1.34216 * 109.12386 * 0.37942 * 25 24 23 27 27 C 1.33646 * 110.91145 * 359.74524 * 26 25 24 28 28 C 1.52997 * 109.47092 * 60.00194 * 18 17 16 29 29 C 1.53002 * 109.46860 * 205.00557 * 14 13 12 30 30 H 0.97003 * 119.99448 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00180 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46596 * 60.01017 * 12 10 9 33 33 H 1.08991 * 109.47759 * 300.00852 * 12 10 9 34 34 H 1.00892 * 111.00423 * 303.96448 * 13 12 10 35 35 H 1.09001 * 109.47194 * 299.99524 * 16 14 13 36 36 H 1.08992 * 109.47399 * 59.99697 * 16 14 13 37 37 H 1.09000 * 109.47437 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47508 * 59.99571 * 17 16 14 39 39 H 0.97007 * 119.99693 * 264.99991 * 20 18 17 40 40 H 1.07998 * 127.02407 * 0.02562 * 24 23 21 41 41 H 1.08003 * 125.44229 * 180.12323 * 25 24 23 42 42 H 1.07998 * 125.80897 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.47375 * 180.02562 * 28 18 17 44 44 H 1.09002 * 109.47497 * 59.99850 * 28 18 17 45 45 H 1.09002 * 109.47075 * 299.99593 * 29 14 13 46 46 H 1.08996 * 109.47407 * 60.00550 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2433 -4.8630 0.0011 13 7 2.1979 -5.9796 0.0004 14 6 1.4974 -7.2709 0.0003 15 1 0.5844 -7.1891 0.5901 16 6 1.1434 -7.6589 -1.4367 17 6 0.4133 -9.0034 -1.4368 18 6 1.3190 -10.0756 -0.8275 19 1 2.2321 -10.1578 -1.4172 20 7 0.6203 -11.3631 -0.8281 21 6 0.6497 -12.1454 -1.9252 22 8 1.2567 -11.7826 -2.9146 23 6 -0.0528 -13.4411 -1.9255 24 6 -0.1295 -14.4101 -3.0285 25 6 -0.8676 -15.4326 -2.5704 26 8 -1.2470 -15.1709 -1.3098 27 6 -0.7728 -13.9890 -0.9046 28 6 1.6732 -9.6876 0.6094 29 6 2.4037 -8.3427 0.6094 30 1 -0.4849 0.8401 0.0004 31 1 0.3531 -2.3907 0.0005 32 1 0.6165 -4.9209 -0.8887 33 1 0.6169 -4.9205 0.8912 34 1 2.8322 -5.9126 -0.7813 35 1 0.4977 -6.8953 -1.8706 36 1 2.0563 -7.7407 -2.0264 37 1 0.1614 -9.2801 -2.4605 38 1 -0.4998 -8.9212 -0.8471 39 1 0.1364 -11.6527 -0.0388 40 1 0.3187 -14.3186 -4.0068 41 1 -1.1199 -16.3223 -3.1283 42 1 -0.9327 -13.5431 0.0660 43 1 2.3188 -10.4512 1.0433 44 1 0.7602 -9.6053 1.1992 45 1 3.3167 -8.4246 0.0195 46 1 2.6560 -8.0663 1.6331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698705857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:10 Heat of formation + Delta-G solvation = -69.412468 kcal Electronic energy + Delta-G solvation = -27623.584689 eV Core-core repulsion = 23514.121004 eV Total energy + Delta-G solvation = -4109.463685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.00211 -40.20972 -38.74993 -37.89506 -35.43050 -33.95754 -33.50745 -32.79889 -31.19764 -30.94431 -30.40717 -28.64015 -26.04177 -24.35440 -23.58560 -22.87936 -21.96692 -21.49131 -20.61814 -20.14006 -19.20943 -18.74155 -17.85342 -16.66530 -16.61979 -16.56441 -16.13040 -15.43845 -15.28231 -14.96987 -14.71226 -14.56976 -14.26467 -14.11450 -13.86907 -13.74670 -13.37244 -13.26374 -13.06165 -12.81786 -12.78738 -12.38042 -12.08719 -11.72846 -11.54347 -11.37378 -11.29468 -11.25462 -11.00678 -10.60945 -10.49394 -10.42738 -10.27984 -10.26672 -10.18772 -9.48039 -9.40767 -9.25215 -8.42549 -7.99240 -7.92665 -6.39830 -3.80568 0.88087 1.62810 2.42557 2.77181 3.01984 3.21732 3.27104 3.31738 3.93498 4.07690 4.11533 4.19864 4.32479 4.44100 4.58507 4.61338 4.90181 4.99248 5.02801 5.07360 5.19499 5.20245 5.23670 5.28269 5.31560 5.36056 5.41712 5.59676 5.62088 5.77946 5.81559 5.82142 5.89080 5.97812 6.01160 6.06820 6.14738 6.25650 6.28782 6.33664 6.45285 7.14898 7.29371 7.56845 7.71768 7.89713 8.08377 8.63598 9.19881 9.56574 10.08340 10.77884 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.001605 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.259585 B =17441.811257 C =17626.391514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.664 5.664 14 C 0.086 3.914 15 H 0.076 0.924 16 C -0.149 4.149 17 C -0.123 4.123 18 C 0.145 3.855 19 H 0.091 0.909 20 N -0.723 5.723 21 C 0.586 3.414 22 O -0.532 6.532 23 C -0.234 4.234 24 C -0.165 4.165 25 C -0.040 4.040 26 O -0.175 6.175 27 C 0.019 3.981 28 C -0.124 4.124 29 C -0.102 4.102 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.160 0.840 41 H 0.210 0.790 42 H 0.211 0.789 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -30.559 -0.588 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.295 5.295 14 C -0.024 4.024 15 H 0.095 0.905 16 C -0.189 4.189 17 C -0.162 4.162 18 C 0.042 3.958 19 H 0.109 0.891 20 N -0.374 5.374 21 C 0.373 3.627 22 O -0.409 6.409 23 C -0.239 4.239 24 C -0.185 4.185 25 C -0.106 4.106 26 O -0.070 6.070 27 C -0.051 4.051 28 C -0.162 4.162 29 C -0.141 4.141 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.178 0.822 41 H 0.226 0.774 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.192 -30.274 -0.457 30.720 hybrid contribution -0.820 0.827 -0.727 1.374 sum -6.013 -29.447 -1.185 30.078 Atomic orbital electron populations 1.69608 1.05929 1.28214 1.50634 1.25255 0.95635 0.99702 0.97339 0.85913 0.78749 0.80455 0.79067 1.19938 1.21000 1.19890 1.19663 0.93358 0.82286 1.47652 0.87983 1.41862 1.09173 1.04606 1.64456 1.19847 0.88403 0.84757 0.84392 1.90522 1.13785 1.87091 1.55343 1.21695 0.94445 0.91003 1.01043 1.60189 1.18448 0.99621 1.51206 1.21648 0.96705 0.89610 0.94445 0.90536 1.22291 1.01132 0.96690 0.98743 1.21837 0.98513 0.94368 1.01467 1.21099 0.95884 0.81288 0.97577 0.89129 1.45956 1.55001 1.20549 1.15876 1.17290 0.79763 0.82571 0.83085 1.90812 1.43193 1.73768 1.33172 1.21602 1.07507 0.98432 0.96325 1.22823 1.02440 0.93018 1.00219 1.23989 1.01787 1.01691 0.83144 1.83798 1.60307 1.33859 1.28996 1.24447 0.96409 0.84766 0.99508 1.21821 1.01233 0.98306 0.94857 1.21434 0.98329 0.91891 1.02437 0.91860 0.77487 0.93925 0.89717 0.83025 0.91513 0.91356 0.91561 0.91745 0.77014 0.82242 0.77388 0.77270 0.91162 0.91321 0.91485 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 10 C 0.44 10.49 7.82 -10.98 -0.09 10.41 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.93 16 12 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 13 N -0.66 -10.57 5.87 -107.99 -0.63 -11.20 16 14 C 0.09 1.01 2.47 -67.71 -0.17 0.85 16 15 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 16 C -0.15 -1.65 5.17 -26.73 -0.14 -1.79 16 17 C -0.12 -1.20 5.49 -26.73 -0.15 -1.35 16 18 C 0.15 1.30 2.45 -67.93 -0.17 1.13 16 19 H 0.09 1.01 7.57 -51.93 -0.39 0.62 16 20 N -0.72 -5.47 5.07 -54.90 -0.28 -5.75 16 21 C 0.59 6.10 7.78 -12.54 -0.10 6.00 16 22 O -0.53 -7.82 16.64 5.27 0.09 -7.73 16 23 C -0.23 -1.94 6.31 -103.27 -0.65 -2.59 16 24 C -0.17 -1.27 11.01 -37.46 -0.41 -1.68 16 25 C -0.04 -0.22 12.03 29.30 0.35 0.14 16 26 O -0.17 -1.07 10.52 7.67 0.08 -0.99 16 27 C 0.02 0.10 11.61 30.08 0.35 0.45 16 28 C -0.12 -0.93 5.39 -26.70 -0.14 -1.07 16 29 C -0.10 -1.03 5.53 -26.70 -0.15 -1.18 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 32 H 0.04 0.69 7.43 -51.93 -0.39 0.30 16 33 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 34 H 0.35 5.88 8.17 -39.30 -0.32 5.56 16 35 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 36 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 1.67 7.57 -40.82 -0.31 1.36 16 40 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.21 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.21 0.24 7.47 -52.49 -0.39 -0.15 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -35.53 385.32 -7.58 -43.11 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.65 Total: 12.85 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.73 Total: 2.08 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.25 Total: -55.40 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.26 Total: -24.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.53 -7.58 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698705857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.303 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds