Wall clock time and date at job start Tue Mar 31 2020 18:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86791 * 120.00562 * 2 1 4 4 H 1.48500 * 109.47215 * 240.00415 * 3 2 1 5 5 H 1.48502 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47513 * 120.00101 * 3 2 1 7 7 C 1.38949 * 119.99357 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00042 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99745 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46959 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99880 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47401 * 325.00504 * 14 13 12 16 16 C 1.53000 * 109.46769 * 85.00797 * 14 13 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46963 * 299.99499 * 17 16 14 19 19 H 1.09002 * 109.47067 * 300.00341 * 18 17 16 20 20 N 1.46496 * 109.47313 * 180.02562 * 18 17 16 21 21 C 1.34773 * 120.00354 * 84.99862 * 20 18 17 22 22 O 1.21612 * 119.99766 * 0.02562 * 21 20 18 23 23 C 1.47386 * 120.00169 * 179.97438 * 21 20 18 24 24 C 1.47019 * 127.18796 * 179.70750 * 23 21 20 25 25 C 1.34177 * 105.95063 * 179.89287 * 24 23 21 26 26 O 1.34216 * 109.12386 * 0.37942 * 25 24 23 27 27 C 1.33646 * 110.91145 * 359.74524 * 26 25 24 28 28 C 1.52997 * 109.47092 * 60.00194 * 18 17 16 29 29 C 1.53002 * 109.46860 * 205.00557 * 14 13 12 30 30 H 0.97003 * 119.99448 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00180 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46596 * 60.01017 * 12 10 9 33 33 H 1.08991 * 109.47759 * 300.00852 * 12 10 9 34 34 H 1.00892 * 111.00423 * 303.96448 * 13 12 10 35 35 H 1.09001 * 109.47194 * 299.99524 * 16 14 13 36 36 H 1.08992 * 109.47399 * 59.99697 * 16 14 13 37 37 H 1.09000 * 109.47437 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47508 * 59.99571 * 17 16 14 39 39 H 0.97007 * 119.99693 * 264.99991 * 20 18 17 40 40 H 1.07998 * 127.02407 * 0.02562 * 24 23 21 41 41 H 1.08003 * 125.44229 * 180.12323 * 25 24 23 42 42 H 1.07998 * 125.80897 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.47375 * 180.02562 * 28 18 17 44 44 H 1.09002 * 109.47497 * 59.99850 * 28 18 17 45 45 H 1.09002 * 109.47075 * 299.99593 * 29 14 13 46 46 H 1.08996 * 109.47407 * 60.00550 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2099 -3.5580 0.0010 12 6 1.2433 -4.8630 0.0011 13 7 2.1979 -5.9796 0.0004 14 6 1.4974 -7.2709 0.0003 15 1 0.5844 -7.1891 0.5901 16 6 1.1434 -7.6589 -1.4367 17 6 0.4133 -9.0034 -1.4368 18 6 1.3190 -10.0756 -0.8275 19 1 2.2321 -10.1578 -1.4172 20 7 0.6203 -11.3631 -0.8281 21 6 0.6497 -12.1454 -1.9252 22 8 1.2567 -11.7826 -2.9146 23 6 -0.0528 -13.4411 -1.9255 24 6 -0.1295 -14.4101 -3.0285 25 6 -0.8676 -15.4326 -2.5704 26 8 -1.2470 -15.1709 -1.3098 27 6 -0.7728 -13.9890 -0.9046 28 6 1.6732 -9.6876 0.6094 29 6 2.4037 -8.3427 0.6094 30 1 -0.4849 0.8401 0.0004 31 1 0.3531 -2.3907 0.0005 32 1 0.6165 -4.9209 -0.8887 33 1 0.6169 -4.9205 0.8912 34 1 2.8322 -5.9126 -0.7813 35 1 0.4977 -6.8953 -1.8706 36 1 2.0563 -7.7407 -2.0264 37 1 0.1614 -9.2801 -2.4605 38 1 -0.4998 -8.9212 -0.8471 39 1 0.1364 -11.6527 -0.0388 40 1 0.3187 -14.3186 -4.0068 41 1 -1.1199 -16.3223 -3.1283 42 1 -0.9327 -13.5431 0.0660 43 1 2.3188 -10.4512 1.0433 44 1 0.7602 -9.6053 1.1992 45 1 3.3167 -8.4246 0.0195 46 1 2.6560 -8.0663 1.6331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698705857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:10 Heat of formation + Delta-G solvation = -97.089587 kcal Electronic energy + Delta-G solvation = -27624.784859 eV Core-core repulsion = 23514.121004 eV Total energy + Delta-G solvation = -4110.663854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46379 -41.02106 -40.20507 -39.23514 -36.53669 -35.86655 -34.36476 -33.56969 -33.22432 -31.75049 -31.00144 -29.66107 -27.58407 -25.75625 -24.56870 -23.69349 -22.49090 -22.28186 -21.46083 -21.13883 -20.68792 -19.89602 -19.30774 -17.90232 -17.32552 -17.16588 -17.09215 -16.81010 -16.36807 -16.08045 -15.94838 -15.83012 -15.53376 -15.28316 -15.07655 -14.60931 -14.54637 -14.15158 -13.92158 -13.84766 -13.63134 -13.48360 -13.32579 -13.19355 -13.05205 -12.81157 -12.44373 -12.34660 -12.15217 -12.11661 -12.09230 -11.50553 -11.47378 -11.34751 -11.11500 -10.85672 -10.33734 -10.12666 -10.01533 -9.72232 -9.24959 -8.46510 -5.95380 0.37376 1.12934 1.40012 1.41768 1.52785 1.99566 2.05710 2.17060 2.29606 2.32426 2.94245 3.20696 3.51490 3.63325 3.69538 3.78575 3.80484 4.01403 4.12357 4.19762 4.27326 4.34792 4.39891 4.48177 4.51671 4.53441 4.58675 4.61416 4.73970 4.78345 4.88449 4.99004 5.04907 5.09145 5.16664 5.22410 5.31533 5.35554 5.40802 5.41903 5.51467 5.93156 6.00039 6.16508 6.41758 6.54738 6.60523 7.12642 7.21369 7.56412 8.12053 8.70592 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.001605 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.259585 B =17441.811257 C =17626.391514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.677 5.677 14 C 0.090 3.910 15 H 0.092 0.908 16 C -0.143 4.143 17 C -0.114 4.114 18 C 0.149 3.851 19 H 0.062 0.938 20 N -0.705 5.705 21 C 0.583 3.417 22 O -0.589 6.589 23 C -0.273 4.273 24 C -0.203 4.203 25 C -0.024 4.024 26 O -0.178 6.178 27 C 0.049 3.951 28 C -0.110 4.110 29 C -0.100 4.100 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.341 0.659 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.416 0.584 40 H 0.149 0.851 41 H 0.244 0.756 42 H 0.254 0.746 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -32.026 1.266 33.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.019 4.019 15 H 0.110 0.890 16 C -0.183 4.183 17 C -0.154 4.154 18 C 0.044 3.956 19 H 0.080 0.920 20 N -0.356 5.356 21 C 0.372 3.628 22 O -0.471 6.471 23 C -0.278 4.278 24 C -0.223 4.223 25 C -0.089 4.089 26 O -0.072 6.072 27 C -0.022 4.022 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.254 0.746 40 H 0.166 0.834 41 H 0.260 0.740 42 H 0.270 0.730 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.182 -31.775 1.441 32.609 hybrid contribution -0.226 1.209 -1.307 1.795 sum -7.408 -30.566 0.134 31.451 Atomic orbital electron populations 1.69667 1.06798 1.29354 1.50207 1.26033 0.96561 1.02380 0.96212 0.84986 0.77764 0.76643 0.78920 1.19820 1.19398 1.19684 1.19645 0.92725 0.84128 1.50142 0.90386 1.41930 1.09316 1.04704 1.65069 1.20950 0.88280 0.86256 0.82140 1.90489 1.15950 1.87999 1.56671 1.21562 0.94088 0.88072 1.02915 1.60243 1.18660 1.00822 1.51021 1.21750 0.97282 0.87947 0.94945 0.88989 1.22198 1.00540 0.97348 0.98210 1.21750 0.99224 0.93681 1.00716 1.20951 0.94743 0.81664 0.98222 0.91979 1.45734 1.54345 1.19562 1.15958 1.17673 0.79065 0.83321 0.82752 1.90779 1.45837 1.75138 1.35325 1.21570 1.09853 0.98231 0.98113 1.22963 1.04411 0.94481 1.00403 1.24556 0.99881 1.01744 0.82709 1.83847 1.60114 1.34031 1.29201 1.25154 0.93493 0.83646 0.99877 1.21724 1.02332 0.96908 0.93836 1.21403 0.97902 0.92790 1.01779 0.91285 0.76960 0.91949 0.87541 0.84035 0.92158 0.92771 0.93694 0.89741 0.74604 0.83368 0.73960 0.73031 0.89653 0.88745 0.92781 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 10 C 0.44 21.04 7.82 87.66 0.69 21.73 16 11 O -0.62 -35.26 15.78 -3.07 -0.05 -35.31 16 12 C 0.07 2.26 5.97 85.56 0.51 2.77 16 13 N -0.68 -21.21 5.87 -495.57 -2.91 -24.12 16 14 C 0.09 1.98 2.47 44.92 0.11 2.09 16 15 H 0.09 1.79 7.80 -2.39 -0.02 1.77 16 16 C -0.14 -3.12 5.17 30.59 0.16 -2.96 16 17 C -0.11 -2.13 5.49 30.60 0.17 -1.97 16 18 C 0.15 2.49 2.45 44.99 0.11 2.60 16 19 H 0.06 1.44 7.57 -2.39 -0.02 1.42 16 20 N -0.70 -9.48 5.07 -445.85 -2.26 -11.74 16 21 C 0.58 12.17 7.78 86.65 0.67 12.84 16 22 O -0.59 -18.47 16.64 -4.07 -0.07 -18.54 16 23 C -0.27 -4.30 6.31 -18.99 -0.12 -4.42 16 24 C -0.20 -3.12 11.01 23.65 0.26 -2.86 16 25 C -0.02 -0.21 12.03 66.89 0.80 0.60 16 26 O -0.18 -1.64 10.52 4.52 0.05 -1.59 16 27 C 0.05 0.37 11.61 67.39 0.78 1.15 16 28 C -0.11 -1.34 5.39 30.61 0.17 -1.18 16 29 C -0.10 -1.87 5.53 30.61 0.17 -1.70 16 30 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 32 H 0.06 1.91 7.43 -2.39 -0.02 1.90 16 33 H 0.11 3.22 8.06 -2.39 -0.02 3.20 16 34 H 0.34 11.70 8.17 -89.70 -0.73 10.96 16 35 H 0.06 1.38 7.45 -2.39 -0.02 1.37 16 36 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.42 2.03 7.57 -92.70 -0.70 1.33 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.24 0.09 8.06 -2.91 -0.02 0.06 16 42 H 0.25 -0.68 7.47 -2.91 -0.02 -0.70 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -81.12 385.32 0.07 -81.04 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -1.13 Total: 35.92 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.76 Total: 9.94 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -6.51 Total: -116.78 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -0.07 Total: -55.44 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.12 0.07 -81.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698705857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.049 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds