Wall clock time and date at job start Tue Mar 31 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 119.99790 * 2 1 4 4 H 1.48506 * 109.47128 * 239.99789 * 3 2 1 5 5 H 1.48506 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47191 * 119.99927 * 3 2 1 7 7 C 1.38947 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99834 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00374 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47410 * 180.02562 * 12 10 9 14 14 C 1.47018 * 110.99667 * 293.95254 * 13 12 10 15 15 C 1.53100 * 109.25453 * 177.60541 * 14 13 12 16 16 O 1.43011 * 109.25489 * 56.85225 * 15 14 13 17 17 C 1.43015 * 113.73944 * 301.32185 * 16 15 14 18 18 H 1.09001 * 109.50818 * 298.69997 * 17 16 15 19 19 C 1.53000 * 109.50783 * 178.60901 * 17 16 15 20 20 N 1.46499 * 109.47003 * 65.00336 * 19 17 16 21 21 C 1.34774 * 120.00060 * 179.97438 * 20 19 17 22 22 O 1.21613 * 120.00304 * 0.02562 * 21 20 19 23 23 C 1.43200 * 120.00253 * 179.97438 * 21 20 19 24 24 C 9.62499 * 172.73563 * 60.25208 * 12 1 2 25 25 C 9.61324 * 172.46400 * 104.39297 * 13 1 2 26 26 C 1.53000 * 117.49885 * 179.27120 * 25 24 23 27 27 C 1.52997 * 60.00347 * 252.51122 * 26 25 24 28 28 C 1.47015 * 111.00064 * 170.31698 * 13 12 10 29 29 H 0.97007 * 120.00427 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00402 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47481 * 59.99981 * 12 10 9 32 32 H 1.09006 * 109.46873 * 300.00189 * 12 10 9 33 33 H 1.08999 * 109.50533 * 57.66851 * 14 13 12 34 34 H 1.09001 * 109.50534 * 297.54249 * 14 13 12 35 35 H 1.08995 * 109.50518 * 296.91226 * 15 14 13 36 36 H 1.09000 * 109.50282 * 176.78382 * 15 14 13 37 37 H 1.08998 * 109.47498 * 305.00250 * 19 17 16 38 38 H 1.09003 * 109.47394 * 185.00319 * 19 17 16 39 39 H 0.96999 * 120.00376 * 359.97438 * 20 19 17 40 40 H 1.09004 * 115.56794 * 324.95794 * 25 24 23 41 41 H 1.09002 * 117.49696 * 0.02562 * 26 25 24 42 42 H 1.09002 * 117.50343 * 145.02226 * 26 25 24 43 43 H 1.08999 * 117.49685 * 252.51237 * 27 26 25 44 44 H 1.08999 * 117.52022 * 107.47599 * 27 26 25 45 45 H 1.08997 * 109.50305 * 62.45613 * 28 13 12 46 46 H 1.09001 * 109.50873 * 302.32528 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 2.9642 -6.0173 -1.2570 15 6 3.9856 -7.1559 -1.1909 16 8 3.3038 -8.3868 -0.9356 17 6 2.5483 -8.3853 0.2788 18 1 3.2181 -8.2265 1.1239 19 6 1.8345 -9.7292 0.4380 20 7 2.8280 -10.7934 0.6014 21 6 2.4276 -12.0705 0.7599 22 8 1.2416 -12.3396 0.7668 23 6 3.3986 -13.1109 0.9191 24 6 4.1947 -13.9637 1.0505 25 6 5.1928 -15.0330 1.2145 26 6 6.6652 -14.6217 1.2761 27 6 6.1184 -15.3231 0.0312 28 6 1.5124 -7.2592 0.2276 29 1 -0.4851 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6168 -4.9201 -0.8919 32 1 0.6174 -4.9212 0.8881 33 1 3.4843 -5.0693 -1.3946 34 1 2.2853 -6.1853 -2.0931 35 1 4.6970 -6.9605 -0.3886 36 1 4.5166 -7.2240 -2.1404 37 1 1.2318 -9.9278 -0.4482 38 1 1.1895 -9.6963 1.3161 39 1 3.7739 -10.5790 0.5956 40 1 4.8804 -15.8781 1.8280 41 1 6.8947 -13.5591 1.1955 42 1 7.3214 -15.1960 1.9300 43 1 6.4147 -16.3590 -0.1338 44 1 5.9878 -14.7224 -0.8689 45 1 0.8103 -7.4471 -0.5847 46 1 0.9727 -7.2179 1.1737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698788867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:21 Heat of formation + Delta-G solvation = -52.004197 kcal Electronic energy + Delta-G solvation = -27345.931311 eV Core-core repulsion = 23237.222506 eV Total energy + Delta-G solvation = -4108.708805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23417 -40.63066 -39.73084 -38.50336 -36.80583 -36.01153 -35.74796 -33.94254 -33.28443 -32.55105 -30.41451 -28.48234 -26.95126 -25.58020 -25.09864 -23.70386 -23.28882 -22.65464 -21.60394 -21.01894 -19.96350 -19.79191 -18.02528 -17.61129 -17.53640 -17.38883 -17.10859 -16.58320 -16.45864 -16.24704 -16.11376 -15.84756 -15.64558 -15.44036 -15.13772 -14.76305 -14.64501 -14.05693 -13.83704 -13.52673 -13.49502 -13.28989 -13.08121 -12.96912 -12.86418 -12.43919 -12.42054 -12.40775 -12.34342 -12.25715 -12.12448 -11.69443 -11.56923 -11.42576 -11.10881 -10.82511 -10.76570 -10.29071 -10.22712 -10.00107 -9.33166 -8.46224 -5.94987 0.36986 1.12258 1.39807 1.42072 1.52678 1.89149 2.04660 2.26916 2.27989 2.57366 2.66602 3.02830 3.11111 3.20542 3.33999 3.73473 3.81291 3.84621 3.97718 4.02632 4.03452 4.08217 4.16790 4.31236 4.40073 4.44669 4.47463 4.48558 4.56283 4.61237 4.64534 4.77894 4.85993 4.93296 4.97510 5.01238 5.09151 5.15884 5.22005 5.40919 5.77423 5.95101 6.04822 6.10897 6.13284 6.27709 6.60265 6.93158 7.12830 7.56257 8.11465 8.70785 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.001657 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.045621 B =16891.629907 C =17499.794577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.613 6.613 12 C 0.057 3.943 13 N -0.529 5.529 14 C 0.015 3.985 15 C 0.077 3.923 16 O -0.387 6.387 17 C 0.090 3.910 18 H 0.081 0.919 19 C 0.135 3.865 20 N -0.697 5.697 21 C 0.636 3.364 22 O -0.569 6.569 23 C -0.266 4.266 24 C -0.024 4.024 25 C -0.091 4.091 26 C -0.149 4.149 27 C -0.152 4.152 28 C 0.025 3.975 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -27.445 1.076 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.074 4.074 13 N -0.254 5.254 14 C -0.113 4.113 15 C 0.001 3.999 16 O -0.306 6.306 17 C 0.032 3.968 18 H 0.099 0.901 19 C 0.012 3.988 20 N -0.347 5.347 21 C 0.424 3.576 22 O -0.450 6.450 23 C -0.269 4.269 24 C -0.027 4.027 25 C -0.108 4.108 26 C -0.186 4.186 27 C -0.189 4.189 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.254 0.746 40 H 0.172 0.828 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.004 -27.496 1.331 28.963 hybrid contribution -0.695 1.521 -0.570 1.767 sum 8.309 -25.975 0.761 27.282 Atomic orbital electron populations 1.69668 1.06844 1.29328 1.50286 1.26023 0.96509 1.02386 0.96285 0.84996 0.77747 0.76708 0.78929 1.19699 1.19628 1.19733 1.19629 0.92737 0.83950 1.49976 0.90158 1.41926 1.09312 1.04699 1.65120 1.20681 0.88304 0.85803 0.82305 1.90451 1.15534 1.87709 1.56229 1.21751 0.93549 0.88431 1.03637 1.61747 1.25663 1.02240 1.35746 1.22883 0.97370 1.01327 0.89762 1.22623 0.93013 0.81650 1.02659 1.87956 1.65674 1.35521 1.41498 1.22306 0.93107 0.93054 0.88364 0.90096 1.21404 0.90597 0.83322 1.03525 1.45610 1.11747 1.05330 1.72034 1.14743 0.85332 0.81383 0.76155 1.90835 1.18069 1.83509 1.52574 1.20516 0.98864 0.99478 1.08046 1.22121 0.94482 0.94303 0.91775 1.19308 0.88207 0.96155 1.07142 1.23249 0.91797 1.02501 1.01047 1.23237 0.99581 1.03929 0.92150 1.22779 0.95916 0.88037 1.03546 0.91341 0.77063 0.91584 0.86775 0.90292 0.94570 0.92374 0.86581 0.90697 0.88076 0.74613 0.82756 0.88498 0.85112 0.85128 0.88816 0.93046 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -28.92 5.29 -306.99 -1.62 -30.54 16 10 C 0.44 20.46 7.49 87.66 0.66 21.12 16 11 O -0.61 -32.61 13.90 -3.07 -0.04 -32.66 16 12 C 0.06 1.92 5.45 85.56 0.47 2.39 16 13 N -0.53 -16.30 4.47 -899.75 -4.02 -20.31 16 14 C 0.01 0.45 5.29 86.31 0.46 0.91 16 15 C 0.08 1.90 7.01 72.02 0.50 2.41 16 16 O -0.39 -8.97 10.42 -148.98 -1.55 -10.52 16 17 C 0.09 1.83 2.84 30.63 0.09 1.92 16 18 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 19 C 0.14 2.55 5.34 86.38 0.46 3.01 16 20 N -0.70 -13.45 5.50 -470.75 -2.59 -16.03 16 21 C 0.64 15.69 7.65 85.49 0.65 16.34 16 22 O -0.57 -18.19 17.09 -4.07 -0.07 -18.26 16 23 C -0.27 -5.82 13.61 30.02 0.41 -5.41 16 24 C -0.02 -0.42 13.47 31.12 0.42 0.00 16 25 C -0.09 -0.83 6.22 -12.60 -0.08 -0.91 16 26 C -0.15 -0.83 10.21 30.59 0.31 -0.52 16 27 C -0.15 -0.91 10.21 30.60 0.31 -0.60 16 28 C 0.03 0.57 4.93 86.31 0.43 1.00 16 29 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 30 H 0.40 19.03 7.90 -92.70 -0.73 18.29 16 31 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 32 H 0.11 3.31 8.04 -2.38 -0.02 3.29 16 33 H 0.08 3.05 5.85 -2.39 -0.01 3.04 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 2.38 8.14 -2.39 -0.02 2.37 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.42 6.54 8.44 -92.71 -0.78 5.76 16 40 H 0.16 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.11 2.02 8.09 -2.39 -0.02 2.00 16 Total: -1.00 -73.63 395.08 -1.71 -75.34 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.49 Total: 33.85 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.37 Total: 23.63 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -7.95 Total: -115.88 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -1.66 Total: -61.43 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -73.63 -1.71 -75.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698788867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.336 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds