Wall clock time and date at job start Tue Mar 31 2020 19:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48501 * 109.47264 * 240.00034 * 3 2 1 5 5 H 1.48504 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47445 * 119.99729 * 3 2 1 7 7 C 1.38807 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99646 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46744 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47160 * 55.00085 * 11 10 9 13 13 C 1.52998 * 109.47177 * 295.00167 * 11 10 9 14 14 C 1.53004 * 109.47010 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47263 * 59.99644 * 14 13 11 16 16 C 1.52994 * 109.47096 * 299.99965 * 15 14 13 17 17 C 1.52999 * 109.46891 * 174.99938 * 11 10 9 18 18 H 1.09003 * 109.47425 * 60.00426 * 17 11 10 19 19 N 1.46500 * 109.47291 * 300.00085 * 17 11 10 20 20 C 1.34776 * 119.99964 * 155.00244 * 19 17 11 21 21 O 1.21594 * 120.00251 * 359.97438 * 20 19 17 22 22 C 1.47493 * 119.99780 * 179.97438 * 20 19 17 23 23 C 1.37804 * 126.77460 * 0.02562 * 22 20 19 24 24 O 1.33497 * 108.34572 * 179.73300 * 23 22 20 25 25 C 1.34890 * 109.88660 * 0.43711 * 24 23 22 26 26 C 1.46763 * 125.65857 * 179.81825 * 25 24 23 27 27 N 1.34784 * 119.99939 * 359.69779 * 26 25 24 28 28 O 1.21677 * 120.00516 * 179.69950 * 26 25 24 29 29 C 1.36069 * 108.68843 * 359.55934 * 25 24 23 30 30 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00269 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47340 * 60.00221 * 10 9 7 33 33 H 1.08996 * 109.47217 * 299.99765 * 10 9 7 34 34 H 1.09003 * 109.47103 * 299.99552 * 13 11 10 35 35 H 1.08994 * 109.47326 * 60.00371 * 13 11 10 36 36 H 1.08995 * 109.47025 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46532 * 299.99547 * 14 13 11 38 38 H 1.08997 * 109.47020 * 60.00632 * 15 14 13 39 39 H 1.09006 * 109.46694 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47635 * 299.99773 * 16 15 14 41 41 H 1.09007 * 109.47034 * 179.97438 * 16 15 14 42 42 H 0.96996 * 119.99929 * 334.99793 * 19 17 11 43 43 H 1.07999 * 125.82888 * 0.02562 * 23 22 20 44 44 H 0.97000 * 119.99339 * 359.97438 * 27 26 25 45 45 H 0.96995 * 120.00015 * 179.72439 * 27 26 25 46 46 H 1.07999 * 126.68671 * 180.25854 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0021 12 1 0.3801 -4.7133 -0.8401 13 6 0.2687 -4.8103 1.3091 14 6 -0.7251 -5.9736 1.3097 15 6 0.0362 -7.2949 1.1854 16 6 0.8315 -7.3042 -0.1216 17 6 1.8249 -6.1411 -0.1225 18 1 2.5087 -6.2475 0.7197 19 7 2.5864 -6.1501 -1.3740 20 6 3.6861 -6.9210 -1.4882 21 8 4.0464 -7.6086 -0.5523 22 6 4.4524 -6.9304 -2.7483 23 6 4.1725 -6.2104 -3.8895 24 8 5.1048 -6.4913 -4.8028 25 6 5.9849 -7.3819 -4.3011 26 6 7.1451 -7.9317 -5.0122 27 7 7.3991 -7.5540 -6.2809 28 8 7.8778 -8.7285 -4.4565 29 6 5.6221 -7.6817 -3.0245 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6842 -3.7140 0.8922 33 1 2.6855 -3.7148 -0.8878 34 1 0.9524 -4.9166 2.1512 35 1 -0.2735 -3.8689 1.3978 36 1 -1.2914 -5.9672 2.2410 37 1 -1.4090 -5.8676 0.4675 38 1 0.7200 -7.4008 2.0276 39 1 -0.6719 -8.1236 1.1854 40 1 0.1477 -7.1984 -0.9638 41 1 1.3743 -8.2454 -0.2099 42 1 2.2992 -5.6013 -2.1204 43 1 3.3434 -5.5309 -4.0209 44 1 6.8147 -6.9191 -6.7240 45 1 8.1681 -7.9143 -6.7495 46 1 6.1269 -8.3600 -2.3526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699481995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:47 Heat of formation + Delta-G solvation = -95.708077 kcal Electronic energy + Delta-G solvation = -28686.952722 eV Core-core repulsion = 24576.348775 eV Total energy + Delta-G solvation = -4110.603948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.93871 -41.14762 -40.34700 -39.28705 -36.40054 -35.32561 -34.98689 -34.20699 -33.66539 -31.53553 -31.19823 -30.08624 -26.97843 -25.14575 -24.86790 -24.70050 -22.87896 -22.08474 -21.96419 -21.25943 -20.61880 -19.80377 -19.14203 -18.15621 -17.63191 -17.54027 -17.16548 -17.14690 -16.70856 -15.99134 -15.80579 -15.58762 -15.44409 -15.42798 -15.15199 -14.95002 -14.75434 -14.54362 -14.33120 -14.05288 -13.80521 -13.60775 -13.29284 -12.93080 -12.71041 -12.66793 -12.21293 -12.11075 -11.91203 -11.83490 -11.75899 -11.56284 -11.36024 -11.25173 -11.15522 -11.02219 -10.90240 -10.85968 -10.09682 -9.86245 -8.95898 -7.93137 -5.20765 -0.16520 0.42494 1.41961 1.48741 1.50718 1.56802 1.90669 2.00985 2.27099 2.49422 2.57202 3.35976 3.40354 3.57218 3.64170 3.78629 3.86964 3.95995 4.12135 4.24802 4.28024 4.34478 4.42467 4.48694 4.52616 4.56452 4.59590 4.70142 4.87792 4.89665 4.93817 5.06680 5.15289 5.17659 5.26217 5.32192 5.33317 5.42132 5.45554 5.49068 5.52027 5.62529 5.72377 6.23473 6.29318 6.50765 7.06388 7.16426 7.36827 8.12389 8.37081 9.29697 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003066 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.384458 B = 9129.106925 C =11718.603170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.159 3.841 11 C -0.083 4.083 12 H 0.086 0.914 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.065 0.935 19 N -0.704 5.704 20 C 0.588 3.412 21 O -0.580 6.580 22 C -0.264 4.264 23 C 0.090 3.910 24 O -0.139 6.139 25 C -0.095 4.095 26 C 0.611 3.389 27 N -0.817 5.817 28 O -0.565 6.565 29 C -0.080 4.080 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.413 0.587 43 H 0.267 0.733 44 H 0.422 0.578 45 H 0.421 0.579 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -16.297 -13.045 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.032 3.968 11 C -0.103 4.103 12 H 0.105 0.895 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.157 4.157 17 C 0.057 3.943 18 H 0.084 0.916 19 N -0.355 5.355 20 C 0.376 3.624 21 O -0.461 6.461 22 C -0.269 4.269 23 C 0.017 3.983 24 O -0.031 6.031 25 C -0.146 4.146 26 C 0.395 3.605 27 N -0.381 5.381 28 O -0.446 6.446 29 C -0.102 4.102 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.250 0.750 43 H 0.282 0.718 44 H 0.253 0.747 45 H 0.254 0.746 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.988 -17.041 -12.236 21.564 hybrid contribution 0.136 1.487 -0.056 1.494 sum 5.124 -15.555 -12.292 20.477 Atomic orbital electron populations 1.69784 1.06359 1.26081 1.59354 1.25450 0.96318 1.00696 1.03720 0.85311 0.77293 0.79663 0.78078 1.20213 1.22116 1.21041 1.19520 0.91277 0.85522 1.41365 0.91261 1.42493 1.05625 1.00730 1.89274 1.20786 0.93669 0.85015 0.97322 1.21428 0.96838 0.92212 0.99793 0.89549 1.21445 0.97956 0.98955 0.96105 1.21538 0.97408 0.93474 1.02654 1.21477 0.98894 0.97828 0.96763 1.21829 0.97479 0.96991 0.99409 1.20862 0.92492 0.94767 0.86130 0.91633 1.45799 1.26794 1.45510 1.17360 1.17437 0.79828 0.79039 0.86048 1.90772 1.69926 1.44094 1.41260 1.20612 1.01574 1.07795 0.96870 1.25931 0.91814 0.96118 0.84472 1.83943 1.31245 1.47863 1.40061 1.21669 0.96912 1.00888 0.95153 1.16508 0.81511 0.80028 0.82416 1.43494 1.33292 1.48352 1.12996 1.90934 1.48972 1.36204 1.68458 1.21887 0.94830 0.98578 0.94865 0.93985 0.79021 0.98126 0.95323 0.92993 0.92926 0.91192 0.91073 0.92536 0.89976 0.90118 0.92425 0.75026 0.71785 0.74667 0.74573 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.89 13.06 21.65 0.28 -56.60 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 44.96 29.55 68.60 2.03 46.99 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.74 -35.28 5.33 -343.45 -1.83 -37.11 16 10 C 0.16 5.94 5.56 86.38 0.48 6.42 16 11 C -0.08 -2.36 1.80 -10.79 -0.02 -2.38 16 12 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 13 C -0.11 -3.08 5.08 30.60 0.16 -2.93 16 14 C -0.11 -2.49 5.92 30.60 0.18 -2.30 16 15 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 16 C -0.12 -2.52 5.49 30.58 0.17 -2.36 16 17 C 0.16 4.11 1.90 44.98 0.09 4.20 16 18 H 0.07 2.02 7.58 -2.39 -0.02 2.01 16 19 N -0.70 -15.64 4.30 -445.80 -1.92 -17.56 16 20 C 0.59 15.67 7.78 86.68 0.67 16.34 16 21 O -0.58 -20.49 16.60 -4.01 -0.07 -20.56 16 22 C -0.26 -5.67 6.16 -20.08 -0.12 -5.79 16 23 C 0.09 1.16 11.64 67.72 0.79 1.95 16 24 O -0.14 -1.92 10.33 -0.83 -0.01 -1.93 16 25 C -0.09 -1.84 7.09 24.00 0.17 -1.67 16 26 C 0.61 11.76 8.06 86.47 0.70 12.45 16 27 N -0.82 -7.53 8.87 -176.33 -1.56 -9.10 16 28 O -0.57 -15.68 17.68 -4.28 -0.08 -15.76 16 29 C -0.08 -1.91 10.41 22.63 0.24 -1.68 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.38 18.96 6.85 -92.71 -0.63 18.33 16 32 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.03 1.02 7.31 -2.39 -0.02 1.00 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.41 6.73 7.34 -92.71 -0.68 6.05 16 43 H 0.27 0.93 7.46 -2.91 -0.02 0.91 16 44 H 0.42 1.70 8.57 -92.71 -0.79 0.90 16 45 H 0.42 2.48 8.93 -92.71 -0.83 1.65 16 46 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -78.01 384.05 -0.05 -78.06 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -1.88 Total: 29.15 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.98 Total: 4.42 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.03 Total: -120.37 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.15 Total: -38.25 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -78.01 -0.05 -78.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699481995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds