Wall clock time and date at job start Tue Mar 31 2020 19:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48500 * 109.46586 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47226 * 300.00030 * 3 2 1 6 6 H 1.48502 * 109.46845 * 60.00138 * 3 2 1 7 7 C 1.38810 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00158 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47280 * 305.00162 * 11 10 9 13 13 C 1.53002 * 109.46978 * 65.00089 * 11 10 9 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 17 17 C 1.52996 * 109.46975 * 184.99627 * 11 10 9 18 18 H 1.09001 * 109.47372 * 300.00372 * 17 11 10 19 19 N 1.46499 * 109.47185 * 60.00186 * 17 11 10 20 20 C 1.34778 * 120.00288 * 204.99930 * 19 17 11 21 21 O 1.21595 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.47489 * 120.00032 * 179.97438 * 20 19 17 23 23 C 1.37808 * 126.77602 * 359.69620 * 22 20 19 24 24 O 1.33492 * 108.34583 * 179.86283 * 23 22 20 25 25 C 1.34887 * 109.88693 * 0.40417 * 24 23 22 26 26 C 1.46775 * 125.65619 * 179.75183 * 25 24 23 27 27 N 1.34775 * 119.99878 * 359.97438 * 26 25 24 28 28 O 1.21680 * 120.00212 * 179.97438 * 26 25 24 29 29 C 1.36059 * 108.68893 * 359.74456 * 25 24 23 30 30 H 0.97003 * 119.99900 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00535 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46961 * 59.99428 * 10 9 7 33 33 H 1.09000 * 109.46503 * 300.00002 * 10 9 7 34 34 H 1.09002 * 109.47097 * 299.99801 * 13 11 10 35 35 H 1.09001 * 109.47142 * 59.99766 * 13 11 10 36 36 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 37 37 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 39 39 H 1.08996 * 109.46884 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 42 42 H 0.97001 * 120.00197 * 25.00030 * 19 17 11 43 43 H 1.08000 * 125.82799 * 359.97438 * 23 22 20 44 44 H 0.97000 * 119.99994 * 0.02562 * 27 26 25 45 45 H 0.97001 * 119.99498 * 180.02562 * 27 26 25 46 46 H 1.08000 * 126.68523 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.3795 -4.7122 0.8435 13 6 0.2697 -4.8120 -1.3056 14 6 -0.7250 -5.9745 -1.3050 15 6 0.0353 -7.2962 -1.1778 16 6 0.8296 -7.3039 0.1299 17 6 1.8247 -6.1410 0.1289 18 1 2.5092 -6.2484 -0.7126 19 7 2.5853 -6.1484 1.3809 20 6 3.6849 -6.9190 1.4970 21 8 4.0459 -7.6079 0.5623 22 6 4.4508 -6.9260 2.7574 23 6 4.1737 -6.1997 3.8953 24 8 5.0995 -6.4871 4.8131 25 6 5.9832 -7.3741 4.3113 26 6 7.1435 -7.9222 5.0237 27 7 7.3974 -7.5415 6.2914 28 8 7.8763 -8.7202 4.4697 29 6 5.6205 -7.6765 3.0353 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6841 -3.7141 0.8921 33 1 2.6854 -3.7148 -0.8878 34 1 -0.2723 -3.8706 -1.3960 35 1 0.9541 -4.9194 -2.1471 36 1 -1.4094 -5.8667 -0.4635 37 1 -1.2912 -5.9688 -2.2364 38 1 0.7196 -7.4040 -2.0193 39 1 -0.6733 -8.1244 -1.1777 40 1 1.3716 -8.2452 0.2203 41 1 0.1451 -7.1960 0.9713 42 1 2.2975 -5.5986 2.1265 43 1 3.3475 -5.5161 4.0234 44 1 6.8131 -6.9056 6.7331 45 1 8.1645 -7.9035 6.7620 46 1 6.1258 -8.3558 2.3647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699482027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:54 Heat of formation + Delta-G solvation = -68.817883 kcal Electronic energy + Delta-G solvation = -28685.895747 eV Core-core repulsion = 24576.457845 eV Total energy + Delta-G solvation = -4109.437901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.16406 -40.05397 -39.54197 -38.13783 -34.66221 -34.33074 -34.19658 -33.38394 -31.93317 -30.67036 -29.66609 -29.02974 -25.35351 -24.17290 -24.11116 -23.02626 -21.81045 -21.23237 -20.67059 -20.25325 -19.70691 -18.87709 -17.56558 -17.16828 -16.86827 -16.75567 -16.20746 -16.08279 -15.08205 -14.83394 -14.75809 -14.60686 -14.41573 -14.19129 -13.80156 -13.76007 -13.48889 -13.31772 -13.07520 -12.96650 -12.69747 -12.44545 -11.86736 -11.57004 -11.14488 -10.92886 -10.91149 -10.90107 -10.75170 -10.47308 -10.37023 -10.25623 -10.24400 -10.15051 -10.00757 -9.89102 -9.68028 -9.17871 -8.97183 -8.87454 -6.95627 -5.80950 -3.09256 0.58468 1.31718 2.17199 2.71167 2.91429 3.21528 3.25154 3.39971 3.46537 3.48213 4.18903 4.28366 4.53066 4.60602 4.78663 4.88420 5.00529 5.13335 5.17227 5.23471 5.33710 5.38920 5.53701 5.56440 5.60796 5.64705 5.71740 5.80701 5.87383 6.07765 6.11091 6.12352 6.17866 6.22839 6.26727 6.31708 6.36316 6.49103 6.53983 6.65404 6.74328 6.81906 6.87213 7.47033 7.66949 7.67298 8.16553 8.38191 9.49747 10.07125 10.41979 11.41866 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.003068 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.101797 B = 9125.408157 C =11716.826302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.090 0.910 19 N -0.714 5.714 20 C 0.587 3.413 21 O -0.534 6.534 22 C -0.235 4.235 23 C 0.053 3.947 24 O -0.153 6.153 25 C -0.097 4.097 26 C 0.613 3.387 27 N -0.844 5.844 28 O -0.520 6.520 29 C -0.058 4.058 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.399 0.601 43 H 0.224 0.776 44 H 0.408 0.592 45 H 0.410 0.590 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -16.500 10.956 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.051 3.949 18 H 0.108 0.892 19 N -0.364 5.364 20 C 0.374 3.626 21 O -0.412 6.412 22 C -0.240 4.240 23 C -0.020 4.020 24 O -0.047 6.047 25 C -0.148 4.148 26 C 0.398 3.602 27 N -0.407 5.407 28 O -0.397 6.397 29 C -0.079 4.079 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.233 0.767 43 H 0.240 0.760 44 H 0.237 0.763 45 H 0.242 0.758 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.563 -17.268 10.075 20.752 hybrid contribution -0.082 1.542 0.691 1.692 sum 5.481 -15.725 10.766 19.831 Atomic orbital electron populations 1.69665 1.05067 1.25528 1.57939 1.24722 0.95510 0.97637 1.03074 0.86144 0.78829 0.84192 0.77205 1.20585 1.21854 1.21893 1.19258 0.91032 0.84178 1.42444 0.91261 1.42372 1.05813 0.99877 1.89459 1.20668 0.93007 0.85347 0.97922 1.21598 0.97695 0.93290 0.99314 0.90663 1.21496 0.97672 0.98887 0.96467 1.21601 0.98066 0.94523 1.01713 1.21487 0.98779 0.97668 0.97372 1.21907 0.97791 0.98440 0.98340 1.21064 0.92671 0.94999 0.86204 0.89189 1.45932 1.27368 1.45695 1.17430 1.17161 0.79879 0.79777 0.85817 1.90797 1.68721 1.42048 1.39585 1.20799 1.01163 1.05419 0.96613 1.25217 0.92505 0.98061 0.86215 1.83901 1.31794 1.48872 1.40114 1.21781 0.96400 1.00927 0.95679 1.16474 0.81926 0.80363 0.81478 1.43673 1.33310 1.49098 1.14636 1.90955 1.47508 1.33989 1.67259 1.21901 0.93947 0.97960 0.94103 0.93578 0.78212 0.96465 0.96320 0.90187 0.91979 0.92025 0.92065 0.91845 0.92130 0.91728 0.91864 0.76654 0.76010 0.76317 0.75848 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.46 5.33 -59.91 -0.32 -17.78 16 10 C 0.16 2.98 5.57 -4.04 -0.02 2.96 16 11 C -0.10 -1.45 1.80 -90.62 -0.16 -1.62 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.56 5.08 -26.73 -0.14 -1.70 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 16 C -0.13 -1.46 5.50 -26.71 -0.15 -1.61 16 17 C 0.15 2.03 1.90 -67.91 -0.13 1.90 16 18 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 19 N -0.71 -8.45 4.30 -54.84 -0.24 -8.69 16 20 C 0.59 7.92 7.78 -12.49 -0.10 7.82 16 21 O -0.53 -9.14 16.60 5.28 0.09 -9.05 16 22 C -0.24 -2.64 6.16 -104.95 -0.65 -3.29 16 23 C 0.05 0.43 11.64 30.58 0.36 0.78 16 24 O -0.15 -1.29 10.33 6.19 0.06 -1.22 16 25 C -0.10 -0.99 7.09 -36.92 -0.26 -1.25 16 26 C 0.61 6.12 8.06 -12.81 -0.10 6.02 16 27 N -0.84 -4.72 8.87 30.28 0.27 -4.45 16 28 O -0.52 -7.07 17.68 5.21 0.09 -6.98 16 29 C -0.06 -0.68 10.41 -39.03 -0.41 -1.09 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.38 9.59 6.85 -40.82 -0.28 9.31 16 32 H 0.02 0.32 7.30 -51.93 -0.38 -0.06 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.40 3.82 7.34 -40.82 -0.30 3.52 16 43 H 0.22 0.96 7.46 -52.49 -0.39 0.57 16 44 H 0.41 1.40 8.57 -40.82 -0.35 1.05 16 45 H 0.41 1.60 8.93 -40.82 -0.36 1.24 16 46 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -35.09 384.05 -7.48 -42.57 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.60 Total: 10.68 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.32 Total: -1.16 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.44 Total: -57.58 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.24 Total: -17.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.09 -7.48 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699482027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.250 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds