Wall clock time and date at job start Tue Mar 31 2020 19:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47502 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47069 * 300.00222 * 3 2 1 6 6 H 1.48506 * 109.46765 * 59.99880 * 3 2 1 7 7 C 1.38815 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99958 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47278 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46870 * 304.99909 * 11 10 9 13 13 C 1.53002 * 109.47346 * 64.99726 * 11 10 9 14 14 C 1.52996 * 109.46972 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47165 * 300.00293 * 14 13 11 16 16 C 1.52999 * 109.47592 * 60.00300 * 15 14 13 17 17 C 1.52997 * 109.46975 * 185.00131 * 11 10 9 18 18 H 1.09001 * 109.46922 * 59.99912 * 17 11 10 19 19 N 1.46496 * 109.47194 * 299.99578 * 17 11 10 20 20 C 1.34773 * 119.99909 * 155.00140 * 19 17 11 21 21 O 1.21598 * 120.00408 * 0.02562 * 20 19 17 22 22 C 1.47492 * 120.00100 * 180.02562 * 20 19 17 23 23 C 1.37814 * 126.77357 * 0.02562 * 22 20 19 24 24 O 1.33488 * 108.34510 * 179.97438 * 23 22 20 25 25 C 1.34887 * 109.88881 * 359.97438 * 24 23 22 26 26 C 1.46775 * 125.65259 * 179.97438 * 25 24 23 27 27 N 1.34770 * 120.00285 * 359.97438 * 26 25 24 28 28 O 1.21684 * 119.99496 * 179.97438 * 26 25 24 29 29 C 1.36059 * 108.69173 * 359.74587 * 25 24 23 30 30 H 0.96994 * 119.99748 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99520 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46561 * 59.99949 * 10 9 7 33 33 H 1.09001 * 109.46647 * 300.00267 * 10 9 7 34 34 H 1.08992 * 109.46974 * 300.00318 * 13 11 10 35 35 H 1.08996 * 109.46550 * 60.00424 * 13 11 10 36 36 H 1.09000 * 109.47054 * 60.00300 * 14 13 11 37 37 H 1.09001 * 109.46997 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47140 * 299.99954 * 15 14 13 39 39 H 1.09002 * 109.47045 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47839 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47160 * 59.99666 * 16 15 14 42 42 H 0.97003 * 119.99825 * 335.00349 * 19 17 11 43 43 H 1.08003 * 125.82213 * 0.02562 * 23 22 20 44 44 H 0.96998 * 120.00053 * 359.97438 * 27 26 25 45 45 H 0.97001 * 119.99941 * 180.02562 * 27 26 25 46 46 H 1.07991 * 126.69260 * 180.24993 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7130 0.8404 13 6 0.2695 -4.8109 -1.3088 14 6 -0.7243 -5.9742 -1.3096 15 6 0.0370 -7.2954 -1.1842 16 6 0.8313 -7.3043 0.1234 17 6 1.8246 -6.1412 0.1246 18 1 2.3904 -6.1474 1.0562 19 7 2.7445 -6.2846 -1.0065 20 6 3.8437 -7.0552 -0.8876 21 8 4.0718 -7.6318 0.1585 22 6 4.7702 -7.1992 -2.0261 23 6 4.6493 -6.6128 -3.2674 24 8 5.6894 -6.9910 -4.0138 25 6 6.4921 -7.8083 -3.3018 26 6 7.7324 -8.4250 -3.7873 27 7 8.1542 -8.1899 -5.0455 28 8 8.3798 -9.1485 -3.0537 29 6 5.9642 -7.9622 -2.0573 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6847 -3.7145 -0.8905 34 1 -0.2724 -3.8695 -1.3983 35 1 0.9539 -4.9177 -2.1503 36 1 -1.4088 -5.8679 -0.4680 37 1 -1.2899 -5.9682 -2.2414 38 1 0.7215 -7.4016 -2.0258 39 1 -0.6710 -8.1242 -1.1852 40 1 1.3740 -8.2452 0.2126 41 1 0.1468 -7.1980 0.9651 42 1 2.5623 -5.8249 -1.8411 43 1 3.8499 -5.9582 -3.5821 44 1 7.6380 -7.6135 -5.6304 45 1 8.9737 -8.5978 -5.3664 46 1 6.3735 -8.5530 -1.2513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699482030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:57 Heat of formation + Delta-G solvation = -65.679350 kcal Electronic energy + Delta-G solvation = -28982.568279 eV Core-core repulsion = 24873.266475 eV Total energy + Delta-G solvation = -4109.301804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17664 -40.25890 -39.55697 -38.11382 -34.69751 -34.32387 -33.79380 -33.33583 -31.96498 -30.71986 -29.76901 -29.25189 -25.36299 -24.15585 -24.11632 -23.01087 -22.16491 -21.31629 -20.78885 -20.25464 -19.14699 -18.98157 -17.56449 -17.16273 -16.88375 -16.76350 -16.32819 -15.67246 -15.37233 -14.88942 -14.77894 -14.69183 -14.59292 -14.01137 -13.93344 -13.67747 -13.49716 -13.30772 -13.10768 -12.97115 -12.76707 -12.15137 -11.99817 -11.72391 -11.45834 -10.93645 -10.92442 -10.90987 -10.77097 -10.41754 -10.37584 -10.25572 -10.22075 -10.06875 -10.00698 -9.89978 -9.66438 -9.19143 -8.97231 -8.87787 -6.95384 -5.80572 -3.08862 0.57138 1.31256 2.15690 2.70334 2.91960 3.22433 3.25933 3.40383 3.46833 3.48561 4.17621 4.27126 4.53466 4.60531 4.79448 4.85131 4.88338 5.11995 5.13674 5.22371 5.29130 5.36747 5.53507 5.56067 5.59770 5.64641 5.71066 5.77170 5.81603 6.01273 6.10681 6.10850 6.13020 6.19261 6.23348 6.30592 6.33064 6.42542 6.51798 6.63217 6.76795 6.80842 6.82409 7.47659 7.66005 7.67548 8.17515 8.38629 9.50143 10.07548 10.42226 11.42319 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002987 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.642960 B = 9371.990631 C =11234.882912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.156 3.844 18 H 0.090 0.910 19 N -0.709 5.709 20 C 0.586 3.414 21 O -0.534 6.534 22 C -0.234 4.234 23 C 0.051 3.949 24 O -0.153 6.153 25 C -0.096 4.096 26 C 0.613 3.387 27 N -0.844 5.844 28 O -0.520 6.520 29 C -0.058 4.058 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.398 0.602 43 H 0.222 0.778 44 H 0.408 0.592 45 H 0.410 0.590 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -17.803 -11.753 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.105 0.895 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.168 4.168 17 C 0.052 3.948 18 H 0.108 0.892 19 N -0.361 5.361 20 C 0.372 3.628 21 O -0.412 6.412 22 C -0.238 4.238 23 C -0.022 4.022 24 O -0.047 6.047 25 C -0.147 4.147 26 C 0.397 3.603 27 N -0.407 5.407 28 O -0.397 6.397 29 C -0.079 4.079 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.233 0.767 43 H 0.238 0.762 44 H 0.237 0.763 45 H 0.242 0.758 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.930 -18.454 -10.690 22.424 hybrid contribution 0.003 1.458 -0.727 1.629 sum 6.934 -16.996 -11.417 21.617 Atomic orbital electron populations 1.69660 1.05077 1.25539 1.57923 1.24723 0.95511 0.97650 1.03061 0.86142 0.78823 0.84183 0.77201 1.20583 1.21891 1.21855 1.19260 0.91030 0.84181 1.42463 0.91257 1.42372 1.05825 0.99892 1.89444 1.20641 0.92961 0.85336 0.97835 1.21642 0.97854 0.93324 0.99329 0.89469 1.21528 0.97635 0.99080 0.96484 1.21593 0.98076 0.94471 1.01746 1.21491 0.98617 0.97544 0.97654 1.21904 0.97926 0.98567 0.98357 1.20993 0.89627 0.94633 0.89590 0.89171 1.45947 1.23751 1.49191 1.17206 1.17165 0.80221 0.79117 0.86248 1.90798 1.74555 1.47033 1.28808 1.20816 1.00240 1.06770 0.96006 1.25178 0.89948 0.97695 0.89403 1.83897 1.29611 1.50503 1.40673 1.21785 0.96686 1.03255 0.93015 1.16474 0.81878 0.79765 0.82136 1.43671 1.29812 1.53181 1.14052 1.90957 1.55118 1.37471 1.56133 1.21904 0.92641 0.97176 0.96183 0.93570 0.78204 0.96370 0.96548 0.90177 0.92901 0.91820 0.92249 0.92393 0.92428 0.91638 0.90877 0.76658 0.76168 0.76329 0.75843 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.52 5.33 -59.91 -0.32 -17.84 16 10 C 0.16 3.00 5.42 -4.04 -0.02 2.98 16 11 C -0.10 -1.47 2.02 -90.62 -0.18 -1.66 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.43 4.91 -26.73 -0.13 -1.56 16 14 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 15 C -0.12 -1.15 5.76 -26.73 -0.15 -1.31 16 16 C -0.13 -1.46 5.60 -26.76 -0.15 -1.61 16 17 C 0.16 2.01 2.23 -67.96 -0.15 1.86 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 19 N -0.71 -8.23 3.60 -54.89 -0.20 -8.43 16 20 C 0.59 7.80 7.78 -12.49 -0.10 7.70 16 21 O -0.53 -9.07 16.60 5.28 0.09 -8.98 16 22 C -0.23 -2.59 6.16 -104.95 -0.65 -3.23 16 23 C 0.05 0.40 11.64 30.58 0.36 0.76 16 24 O -0.15 -1.26 10.33 6.20 0.06 -1.19 16 25 C -0.10 -0.97 7.09 -36.92 -0.26 -1.23 16 26 C 0.61 6.04 8.06 -12.81 -0.10 5.93 16 27 N -0.84 -4.59 8.87 30.28 0.27 -4.33 16 28 O -0.52 -7.02 17.68 5.20 0.09 -6.92 16 29 C -0.06 -0.67 10.41 -39.03 -0.41 -1.08 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.38 9.62 6.85 -40.82 -0.28 9.34 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.30 7.61 -51.93 -0.40 -0.09 16 34 H 0.08 1.28 7.18 -51.93 -0.37 0.90 16 35 H 0.05 0.62 6.50 -51.93 -0.34 0.28 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 3.83 5.61 -40.82 -0.23 3.60 16 43 H 0.22 0.92 7.46 -52.48 -0.39 0.53 16 44 H 0.41 1.33 8.57 -40.82 -0.35 0.98 16 45 H 0.41 1.55 8.93 -40.82 -0.36 1.18 16 46 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -35.09 379.93 -7.37 -42.46 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.44 Total: 10.28 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.36 Total: -1.04 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.48 Total: -57.37 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.24 Total: -17.09 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.09 -7.37 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699482030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.219 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds