Wall clock time and date at job start Tue Mar 31 2020 19:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47502 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47069 * 300.00222 * 3 2 1 6 6 H 1.48506 * 109.46765 * 59.99880 * 3 2 1 7 7 C 1.38815 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99958 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47278 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46870 * 304.99909 * 11 10 9 13 13 C 1.53002 * 109.47346 * 64.99726 * 11 10 9 14 14 C 1.52996 * 109.46972 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47165 * 300.00293 * 14 13 11 16 16 C 1.52999 * 109.47592 * 60.00300 * 15 14 13 17 17 C 1.52997 * 109.46975 * 185.00131 * 11 10 9 18 18 H 1.09001 * 109.46922 * 59.99912 * 17 11 10 19 19 N 1.46496 * 109.47194 * 299.99578 * 17 11 10 20 20 C 1.34773 * 119.99909 * 155.00140 * 19 17 11 21 21 O 1.21598 * 120.00408 * 0.02562 * 20 19 17 22 22 C 1.47492 * 120.00100 * 180.02562 * 20 19 17 23 23 C 1.37814 * 126.77357 * 0.02562 * 22 20 19 24 24 O 1.33488 * 108.34510 * 179.97438 * 23 22 20 25 25 C 1.34887 * 109.88881 * 359.97438 * 24 23 22 26 26 C 1.46775 * 125.65259 * 179.97438 * 25 24 23 27 27 N 1.34770 * 120.00285 * 359.97438 * 26 25 24 28 28 O 1.21684 * 119.99496 * 179.97438 * 26 25 24 29 29 C 1.36059 * 108.69173 * 359.74587 * 25 24 23 30 30 H 0.96994 * 119.99748 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99520 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46561 * 59.99949 * 10 9 7 33 33 H 1.09001 * 109.46647 * 300.00267 * 10 9 7 34 34 H 1.08992 * 109.46974 * 300.00318 * 13 11 10 35 35 H 1.08996 * 109.46550 * 60.00424 * 13 11 10 36 36 H 1.09000 * 109.47054 * 60.00300 * 14 13 11 37 37 H 1.09001 * 109.46997 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47140 * 299.99954 * 15 14 13 39 39 H 1.09002 * 109.47045 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47839 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47160 * 59.99666 * 16 15 14 42 42 H 0.97003 * 119.99825 * 335.00349 * 19 17 11 43 43 H 1.08003 * 125.82213 * 0.02562 * 23 22 20 44 44 H 0.96998 * 120.00053 * 359.97438 * 27 26 25 45 45 H 0.97001 * 119.99941 * 180.02562 * 27 26 25 46 46 H 1.07991 * 126.69260 * 180.24993 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7130 0.8404 13 6 0.2695 -4.8109 -1.3088 14 6 -0.7243 -5.9742 -1.3096 15 6 0.0370 -7.2954 -1.1842 16 6 0.8313 -7.3043 0.1234 17 6 1.8246 -6.1412 0.1246 18 1 2.3904 -6.1474 1.0562 19 7 2.7445 -6.2846 -1.0065 20 6 3.8437 -7.0552 -0.8876 21 8 4.0718 -7.6318 0.1585 22 6 4.7702 -7.1992 -2.0261 23 6 4.6493 -6.6128 -3.2674 24 8 5.6894 -6.9910 -4.0138 25 6 6.4921 -7.8083 -3.3018 26 6 7.7324 -8.4250 -3.7873 27 7 8.1542 -8.1899 -5.0455 28 8 8.3798 -9.1485 -3.0537 29 6 5.9642 -7.9622 -2.0573 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6847 -3.7145 -0.8905 34 1 -0.2724 -3.8695 -1.3983 35 1 0.9539 -4.9177 -2.1503 36 1 -1.4088 -5.8679 -0.4680 37 1 -1.2899 -5.9682 -2.2414 38 1 0.7215 -7.4016 -2.0258 39 1 -0.6710 -8.1242 -1.1852 40 1 1.3740 -8.2452 0.2126 41 1 0.1468 -7.1980 0.9651 42 1 2.5623 -5.8249 -1.8411 43 1 3.8499 -5.9582 -3.5821 44 1 7.6380 -7.6135 -5.6304 45 1 8.9737 -8.5978 -5.3664 46 1 6.3735 -8.5530 -1.2513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699482030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:56 Heat of formation + Delta-G solvation = -92.484353 kcal Electronic energy + Delta-G solvation = -28983.730632 eV Core-core repulsion = 24873.266475 eV Total energy + Delta-G solvation = -4110.464157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.93577 -41.33094 -40.34379 -39.23304 -36.43969 -35.05977 -34.77057 -34.15311 -33.69124 -31.58292 -31.21469 -30.32546 -26.97451 -25.10817 -24.86283 -24.65975 -23.20264 -22.17975 -21.95707 -21.22937 -20.02784 -19.92872 -19.15307 -18.14685 -17.63214 -17.52134 -17.25573 -16.82630 -16.61742 -16.25376 -15.96973 -15.58501 -15.51125 -15.29021 -15.09981 -14.98112 -14.79564 -14.57931 -14.32389 -14.02019 -13.77845 -13.40217 -13.09405 -12.97100 -12.84324 -12.71982 -12.56299 -12.06844 -11.89821 -11.82958 -11.75405 -11.39497 -11.24587 -11.21264 -11.13838 -11.00379 -10.89804 -10.83352 -10.09155 -9.85686 -8.96491 -7.94000 -5.21557 -0.16082 0.43570 1.42136 1.47780 1.49151 1.58361 1.91410 2.03908 2.28796 2.50363 2.56599 3.36831 3.39971 3.60021 3.64163 3.81972 3.86444 3.89322 4.11831 4.25531 4.28184 4.34843 4.45142 4.51280 4.54187 4.61644 4.69431 4.71041 4.77431 4.91167 4.95755 5.05485 5.12140 5.20961 5.30642 5.34375 5.37032 5.42691 5.48682 5.50515 5.56555 5.62824 5.72767 6.24153 6.28870 6.51826 7.06948 7.18154 7.36115 8.11982 8.35972 9.29427 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002987 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.642960 B = 9371.990631 C =11234.882912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.160 3.840 11 C -0.088 4.088 12 H 0.076 0.924 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.124 4.124 17 C 0.164 3.836 18 H 0.066 0.934 19 N -0.698 5.698 20 C 0.587 3.413 21 O -0.580 6.580 22 C -0.263 4.263 23 C 0.089 3.911 24 O -0.138 6.138 25 C -0.094 4.094 26 C 0.611 3.389 27 N -0.817 5.817 28 O -0.565 6.565 29 C -0.081 4.081 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.001 0.999 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.410 0.590 43 H 0.266 0.734 44 H 0.422 0.578 45 H 0.421 0.579 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -17.830 -14.427 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.383 5.383 10 C 0.034 3.966 11 C -0.107 4.107 12 H 0.094 0.906 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.162 4.162 17 C 0.058 3.942 18 H 0.084 0.916 19 N -0.350 5.350 20 C 0.376 3.624 21 O -0.461 6.461 22 C -0.267 4.267 23 C 0.015 3.985 24 O -0.030 6.030 25 C -0.145 4.145 26 C 0.395 3.605 27 N -0.381 5.381 28 O -0.446 6.446 29 C -0.102 4.102 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.248 0.752 43 H 0.282 0.718 44 H 0.253 0.747 45 H 0.254 0.746 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.949 -18.479 -13.444 23.885 hybrid contribution 0.032 1.459 0.084 1.462 sum 6.981 -17.020 -13.359 22.735 Atomic orbital electron populations 1.69798 1.06413 1.25928 1.59570 1.25470 0.96333 1.00769 1.03823 0.85156 0.78190 0.80230 0.76678 1.19380 1.21748 1.22391 1.19603 0.91313 0.85475 1.40980 0.91132 1.42532 1.05657 1.00849 1.89225 1.20768 0.93621 0.84923 0.97319 1.21456 0.96881 0.92251 1.00148 0.90580 1.21466 0.98051 0.98758 0.95950 1.21536 0.97485 0.93713 1.02451 1.21455 0.98772 0.97470 0.96859 1.21848 0.97549 0.97099 0.99723 1.20792 0.89745 0.94427 0.89194 0.91596 1.45791 1.23117 1.48809 1.17255 1.17441 0.80374 0.78379 0.86221 1.90775 1.75601 1.48994 1.30774 1.20616 1.00269 1.09005 0.96831 1.25902 0.89494 0.95452 0.87629 1.83937 1.29345 1.49737 1.40012 1.21658 0.96938 1.03409 0.92541 1.16515 0.81613 0.79402 0.82955 1.43490 1.29904 1.52169 1.12552 1.90938 1.56416 1.39641 1.57608 1.21881 0.93612 0.97972 0.96730 0.94014 0.79087 0.98146 0.95192 0.93131 0.90944 0.92322 0.90629 0.91268 0.90873 0.92377 0.90549 0.75175 0.71850 0.74652 0.74582 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.39 13.06 21.65 0.28 -57.10 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -35.58 5.33 -343.46 -1.83 -37.41 16 10 C 0.16 5.97 5.42 86.38 0.47 6.44 16 11 C -0.09 -2.49 2.02 -10.80 -0.02 -2.51 16 12 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.10 -2.54 4.91 30.59 0.15 -2.39 16 14 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 15 C -0.11 -1.84 5.76 30.59 0.18 -1.66 16 16 C -0.12 -2.63 5.60 30.58 0.17 -2.46 16 17 C 0.16 4.11 2.23 44.98 0.10 4.21 16 18 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 19 N -0.70 -15.10 3.60 -445.83 -1.61 -16.71 16 20 C 0.59 15.35 7.78 86.68 0.67 16.02 16 21 O -0.58 -20.35 16.60 -4.02 -0.07 -20.42 16 22 C -0.26 -5.49 6.16 -20.07 -0.12 -5.61 16 23 C 0.09 1.08 11.64 67.72 0.79 1.87 16 24 O -0.14 -1.81 10.33 -0.72 -0.01 -1.82 16 25 C -0.09 -1.77 7.09 24.00 0.17 -1.60 16 26 C 0.61 11.50 8.06 86.48 0.70 12.20 16 27 N -0.82 -7.16 8.87 -176.33 -1.56 -8.73 16 28 O -0.57 -15.53 17.68 -4.30 -0.08 -15.60 16 29 C -0.08 -1.89 10.41 22.63 0.24 -1.65 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.38 19.13 6.85 -92.71 -0.64 18.50 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.03 1.05 7.61 -2.39 -0.02 1.03 16 34 H 0.05 1.57 7.18 -2.39 -0.02 1.55 16 35 H 0.07 1.45 6.50 -2.39 -0.02 1.44 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.05 7.60 -2.39 -0.02 1.03 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.41 6.60 5.61 -92.71 -0.52 6.08 16 43 H 0.27 0.69 7.46 -2.91 -0.02 0.67 16 44 H 0.42 1.47 8.57 -92.71 -0.79 0.67 16 45 H 0.42 2.32 8.93 -92.71 -0.83 1.49 16 46 H 0.15 4.04 8.06 -2.92 -0.02 4.02 16 Total: -1.00 -78.55 379.93 0.41 -78.13 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -1.72 Total: 27.38 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 4.97 Total: 5.03 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.72 Total: -119.95 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.15 Total: -37.84 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.55 0.41 -78.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699482030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.350 kcal (2) G-P(sol) polarization free energy of solvation -78.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds