Wall clock time and date at job start Tue Mar 31 2020 18:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48499 * 109.47550 * 240.00192 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00331 * 3 2 1 7 7 C 1.38809 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99677 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99877 * 174.01960 * 9 7 2 11 11 C 1.52994 * 109.54620 * 62.01685 * 10 9 7 12 12 N 1.46504 * 109.47015 * 54.54745 * 11 10 9 13 13 C 1.34777 * 120.00312 * 176.56469 * 12 11 10 14 14 O 1.21606 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.47403 * 120.00049 * 179.97438 * 13 12 11 16 16 C 1.37356 * 128.56355 * 0.02562 * 15 13 12 17 17 O 1.33495 * 106.34216 * 179.97438 * 16 15 13 18 18 N 1.20654 * 113.15326 * 359.97438 * 17 16 15 19 19 C 1.30019 * 112.30599 * 359.97438 * 18 17 16 20 20 C 1.50693 * 127.33859 * 179.74023 * 19 18 17 21 21 C 1.53005 * 117.49801 * 8.77251 * 20 19 18 22 22 C 1.53006 * 117.49928 * 300.11667 * 20 19 18 23 23 C 1.53170 * 109.54523 * 182.19987 * 10 9 7 24 24 C 1.53108 * 109.15767 * 63.05971 * 23 10 9 25 25 O 1.42901 * 109.48678 * 57.47870 * 24 23 10 26 26 C 1.42909 * 114.09713 * 298.88654 * 25 24 23 27 27 C 1.53100 * 109.40976 * 61.15718 * 26 25 24 28 28 H 0.97000 * 120.00270 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00273 * 354.01675 * 9 7 2 30 30 H 1.08997 * 109.47629 * 294.54649 * 11 10 9 31 31 H 1.08999 * 109.47234 * 174.54432 * 11 10 9 32 32 H 0.97006 * 119.99555 * 356.56687 * 12 11 10 33 33 H 1.08005 * 126.83372 * 359.97438 * 16 15 13 34 34 H 1.08997 * 115.55002 * 154.44113 * 20 19 18 35 35 H 1.09001 * 117.49637 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49925 * 145.02030 * 21 20 19 37 37 H 1.09004 * 117.49327 * 214.97717 * 22 20 19 38 38 H 1.08993 * 117.49689 * 359.97130 * 22 20 19 39 39 H 1.09000 * 109.52825 * 182.87678 * 23 10 9 40 40 H 1.09000 * 109.52335 * 303.06641 * 23 10 9 41 41 H 1.09002 * 109.40719 * 297.49452 * 24 23 10 42 42 H 1.09002 * 109.49154 * 177.51319 * 24 23 10 43 43 H 1.09001 * 109.47949 * 301.18243 * 26 25 24 44 44 H 1.08997 * 109.49132 * 181.14318 * 26 25 24 45 45 H 1.09003 * 109.51523 * 182.48216 * 27 26 25 46 46 H 1.08995 * 109.57276 * 62.33302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0522 -3.6533 -0.1333 11 6 3.0057 -3.8227 1.0512 12 7 2.2554 -3.6999 2.3035 13 6 2.8795 -3.8838 3.4838 14 8 4.0655 -4.1511 3.5094 15 6 2.1246 -3.7596 4.7438 16 6 0.7942 -3.4666 4.9196 17 8 0.5805 -3.4670 6.2374 18 7 1.5721 -3.7143 6.8787 19 6 2.6098 -3.9210 6.1231 20 6 4.0124 -4.2484 6.5661 21 6 4.2309 -4.5577 8.0486 22 6 4.7254 -3.2332 7.4618 23 6 1.0557 -4.8161 -0.1594 24 6 0.1586 -4.6815 -1.3928 25 8 0.9680 -4.6536 -2.5702 26 6 1.8852 -3.5589 -2.6219 27 6 2.8530 -3.6497 -1.4391 28 1 -0.4850 0.8400 0.0004 29 1 0.3598 -2.3904 0.0874 30 1 3.7751 -3.0517 1.0115 31 1 3.4738 -4.8059 1.0030 32 1 1.3094 -3.4863 2.2831 33 1 0.0658 -3.2742 4.1458 34 1 4.6182 -4.7948 5.8434 35 1 3.3600 -4.5248 8.7032 36 1 4.9808 -5.3073 8.3011 37 1 5.8005 -3.1121 7.3284 38 1 4.1801 -2.3284 7.7301 39 1 1.5985 -5.7602 -0.2067 40 1 0.4437 -4.7917 0.7422 41 1 -0.4152 -3.7573 -1.3241 42 1 -0.5237 -5.5302 -1.4407 43 1 1.3339 -2.6201 -2.5693 44 1 2.4469 -3.5990 -3.5551 45 1 3.5252 -2.7917 -1.4520 46 1 3.4342 -4.5689 -1.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699884668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:49 Heat of formation + Delta-G solvation = 16.286864 kcal Electronic energy + Delta-G solvation = -29918.370352 eV Core-core repulsion = 25812.622869 eV Total energy + Delta-G solvation = -4105.747483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.90237 -39.73490 -38.75602 -37.51419 -35.86438 -33.69181 -33.14093 -32.33972 -31.66761 -30.69438 -29.25312 -27.21876 -24.74663 -24.24996 -24.05559 -23.04516 -22.52112 -21.99078 -20.57583 -19.94324 -18.83096 -18.15118 -17.66901 -17.28622 -16.66185 -15.77941 -15.72420 -15.51361 -15.37248 -15.09040 -14.66323 -14.46105 -14.34152 -13.93812 -13.82035 -13.48553 -13.11624 -12.72361 -12.33192 -12.18055 -12.09283 -11.82230 -11.73415 -11.69638 -11.52415 -11.35782 -10.96783 -10.94899 -10.84404 -10.55191 -10.44101 -10.11145 -9.88634 -9.79149 -9.72626 -9.70705 -9.57579 -9.27392 -8.85187 -8.61304 -7.19033 -5.94764 -3.25835 1.12517 1.71538 2.95374 3.34109 3.38949 3.39732 3.41493 3.49730 3.74787 3.96660 4.20256 4.34036 4.44989 4.79245 4.83358 4.93492 4.97513 5.07044 5.16689 5.18529 5.30666 5.44664 5.47958 5.48948 5.52291 5.59189 5.65478 5.72937 5.84081 5.94987 5.97010 6.01830 6.04590 6.08319 6.15409 6.25191 6.36138 6.46782 6.49473 6.66508 6.72671 6.84968 7.57583 7.67913 7.83286 8.17947 8.22284 8.47400 9.35316 9.84321 10.21233 11.26552 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.003792 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.718086 B = 7382.254105 C = 8519.300763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.003 4.003 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.189 3.811 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.590 3.410 14 O -0.542 6.542 15 C -0.241 4.241 16 C -0.004 4.004 17 O 0.095 5.905 18 N -0.362 5.362 19 C 0.098 3.902 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.151 4.151 24 C 0.066 3.934 25 O -0.393 6.393 26 C 0.070 3.930 27 C -0.152 4.152 28 H 0.257 0.743 29 H 0.384 0.616 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.401 0.599 33 H 0.228 0.772 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -10.110 7.124 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.342 5.342 13 C 0.375 3.625 14 O -0.422 6.422 15 C -0.248 4.248 16 C -0.086 4.086 17 O 0.036 5.964 18 N -0.069 5.069 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.205 4.205 22 C -0.196 4.196 23 C -0.189 4.189 24 C -0.011 4.011 25 O -0.312 6.312 26 C -0.007 4.007 27 C -0.192 4.192 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.244 0.756 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.493 -10.264 8.249 13.402 hybrid contribution 0.007 1.474 -0.654 1.613 sum 2.500 -8.790 7.595 11.883 Atomic orbital electron populations 1.69622 1.04999 1.25993 1.57020 1.24680 0.95397 0.97511 1.02362 0.86370 0.78690 0.83775 0.77961 1.21170 1.21721 1.21330 1.19009 0.90978 0.83600 1.43444 0.91224 1.42485 1.06184 0.99511 1.87342 1.19834 0.91320 0.87398 0.91779 1.21874 0.95210 1.00425 0.83179 1.45572 1.13826 1.69732 1.05024 1.16783 0.86218 0.77580 0.81911 1.90743 1.14787 1.49426 1.87196 1.22372 0.94135 1.13102 0.95189 1.26504 0.97439 0.97701 0.86931 1.84558 1.30529 1.65192 1.16113 1.73576 0.94393 1.19019 1.19942 1.23804 0.95333 0.99295 0.87965 1.20341 0.89739 1.05438 0.94564 1.23048 1.03644 0.99362 0.94425 1.23020 1.00811 0.93743 1.02075 1.22356 0.98952 0.98698 0.98914 1.22459 0.92462 1.01656 0.84536 1.87802 1.52890 1.49582 1.40918 1.22456 0.90848 0.90226 0.97133 1.22446 0.98918 1.01615 0.96243 0.93353 0.78080 0.91390 0.92416 0.76313 0.75554 0.84359 0.88184 0.87980 0.87734 0.88665 0.91172 0.91357 0.92190 0.90066 0.91206 0.90365 0.90400 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.80 13.07 55.49 0.73 -24.07 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -5.65 8.67 -15.06 -0.13 -5.78 16 8 H 0.07 1.67 6.78 -52.49 -0.36 1.32 16 9 N -0.71 -14.24 3.60 -47.07 -0.17 -14.41 16 10 C 0.19 3.10 0.41 -131.64 -0.05 3.05 16 11 C 0.12 1.98 4.36 -4.04 -0.02 1.96 16 12 N -0.69 -10.90 5.13 -61.39 -0.31 -11.22 16 13 C 0.59 9.91 7.81 -12.53 -0.10 9.81 16 14 O -0.54 -10.54 15.80 5.27 0.08 -10.45 16 15 C -0.24 -3.56 6.47 -102.89 -0.67 -4.23 16 16 C 0.00 -0.04 11.85 30.41 0.36 0.32 16 17 O 0.10 1.24 11.06 18.65 0.21 1.45 16 18 N -0.36 -5.23 11.71 34.78 0.41 -4.82 16 19 C 0.10 1.45 7.07 -79.77 -0.56 0.89 16 20 C -0.08 -1.08 5.90 -91.77 -0.54 -1.63 16 21 C -0.17 -1.77 10.17 -26.69 -0.27 -2.05 16 22 C -0.16 -1.80 10.24 -26.69 -0.27 -2.08 16 23 C -0.15 -2.12 4.80 -26.59 -0.13 -2.25 16 24 C 0.07 0.97 6.67 37.21 0.25 1.22 16 25 O -0.39 -6.55 10.77 -35.23 -0.38 -6.93 16 26 C 0.07 1.17 6.68 37.21 0.25 1.41 16 27 C -0.15 -2.48 4.79 -26.59 -0.13 -2.61 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.38 8.20 6.82 -40.82 -0.28 7.93 16 30 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.40 5.85 6.61 -40.82 -0.27 5.58 16 33 H 0.23 1.90 7.68 -52.48 -0.40 1.49 16 34 H 0.14 1.93 7.29 -51.93 -0.38 1.55 16 35 H 0.10 1.10 7.97 -51.93 -0.41 0.68 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.87 7.40 -51.93 -0.38 0.49 16 41 H 0.06 0.99 7.15 -51.93 -0.37 0.62 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.37 7.20 -51.93 -0.37 0.99 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -29.09 376.97 -7.43 -36.51 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.54 Total: 14.40 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.11 Total: -2.12 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.65 Total: -54.52 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.09 Total: -15.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.09 -7.43 -36.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699884668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.802 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds