Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48499 * 109.47550 * 240.00192 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00331 * 3 2 1 7 7 C 1.38809 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99677 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99877 * 174.01960 * 9 7 2 11 11 C 1.52994 * 109.54620 * 62.01685 * 10 9 7 12 12 N 1.46504 * 109.47015 * 54.54745 * 11 10 9 13 13 C 1.34777 * 120.00312 * 176.56469 * 12 11 10 14 14 O 1.21606 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.47403 * 120.00049 * 179.97438 * 13 12 11 16 16 C 1.37356 * 128.56355 * 0.02562 * 15 13 12 17 17 O 1.33495 * 106.34216 * 179.97438 * 16 15 13 18 18 N 1.20654 * 113.15326 * 359.97438 * 17 16 15 19 19 C 1.30019 * 112.30599 * 359.97438 * 18 17 16 20 20 C 1.50693 * 127.33859 * 179.74023 * 19 18 17 21 21 C 1.53005 * 117.49801 * 8.77251 * 20 19 18 22 22 C 1.53006 * 117.49928 * 300.11667 * 20 19 18 23 23 C 1.53170 * 109.54523 * 182.19987 * 10 9 7 24 24 C 1.53108 * 109.15767 * 63.05971 * 23 10 9 25 25 O 1.42901 * 109.48678 * 57.47870 * 24 23 10 26 26 C 1.42909 * 114.09713 * 298.88654 * 25 24 23 27 27 C 1.53100 * 109.40976 * 61.15718 * 26 25 24 28 28 H 0.97000 * 120.00270 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00273 * 354.01675 * 9 7 2 30 30 H 1.08997 * 109.47629 * 294.54649 * 11 10 9 31 31 H 1.08999 * 109.47234 * 174.54432 * 11 10 9 32 32 H 0.97006 * 119.99555 * 356.56687 * 12 11 10 33 33 H 1.08005 * 126.83372 * 359.97438 * 16 15 13 34 34 H 1.08997 * 115.55002 * 154.44113 * 20 19 18 35 35 H 1.09001 * 117.49637 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49925 * 145.02030 * 21 20 19 37 37 H 1.09004 * 117.49327 * 214.97717 * 22 20 19 38 38 H 1.08993 * 117.49689 * 359.97130 * 22 20 19 39 39 H 1.09000 * 109.52825 * 182.87678 * 23 10 9 40 40 H 1.09000 * 109.52335 * 303.06641 * 23 10 9 41 41 H 1.09002 * 109.40719 * 297.49452 * 24 23 10 42 42 H 1.09002 * 109.49154 * 177.51319 * 24 23 10 43 43 H 1.09001 * 109.47949 * 301.18243 * 26 25 24 44 44 H 1.08997 * 109.49132 * 181.14318 * 26 25 24 45 45 H 1.09003 * 109.51523 * 182.48216 * 27 26 25 46 46 H 1.08995 * 109.57276 * 62.33302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0522 -3.6533 -0.1333 11 6 3.0057 -3.8227 1.0512 12 7 2.2554 -3.6999 2.3035 13 6 2.8795 -3.8838 3.4838 14 8 4.0655 -4.1511 3.5094 15 6 2.1246 -3.7596 4.7438 16 6 0.7942 -3.4666 4.9196 17 8 0.5805 -3.4670 6.2374 18 7 1.5721 -3.7143 6.8787 19 6 2.6098 -3.9210 6.1231 20 6 4.0124 -4.2484 6.5661 21 6 4.2309 -4.5577 8.0486 22 6 4.7254 -3.2332 7.4618 23 6 1.0557 -4.8161 -0.1594 24 6 0.1586 -4.6815 -1.3928 25 8 0.9680 -4.6536 -2.5702 26 6 1.8852 -3.5589 -2.6219 27 6 2.8530 -3.6497 -1.4391 28 1 -0.4850 0.8400 0.0004 29 1 0.3598 -2.3904 0.0874 30 1 3.7751 -3.0517 1.0115 31 1 3.4738 -4.8059 1.0030 32 1 1.3094 -3.4863 2.2831 33 1 0.0658 -3.2742 4.1458 34 1 4.6182 -4.7948 5.8434 35 1 3.3600 -4.5248 8.7032 36 1 4.9808 -5.3073 8.3011 37 1 5.8005 -3.1121 7.3284 38 1 4.1801 -2.3284 7.7301 39 1 1.5985 -5.7602 -0.2067 40 1 0.4437 -4.7917 0.7422 41 1 -0.4152 -3.7573 -1.3241 42 1 -0.5237 -5.5302 -1.4407 43 1 1.3339 -2.6201 -2.5693 44 1 2.4469 -3.5990 -3.5551 45 1 3.5252 -2.7917 -1.4520 46 1 3.4342 -4.5689 -1.5126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699884668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = -2.264605 kcal Electronic energy + Delta-G solvation = -29919.174804 eV Core-core repulsion = 25812.622869 eV Total energy + Delta-G solvation = -4106.551935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.97891 -41.07962 -40.07387 -38.46209 -37.27303 -35.19167 -34.36849 -33.78892 -32.81535 -31.95201 -30.93112 -28.53253 -26.05529 -25.72153 -25.23777 -24.36144 -23.43606 -23.24707 -21.75464 -21.04461 -20.20044 -19.40927 -18.99340 -18.74696 -17.79557 -17.18944 -17.00867 -16.72499 -16.52454 -16.32407 -16.13428 -15.77358 -15.72161 -15.33052 -15.27105 -14.81084 -14.31912 -14.12838 -13.69460 -13.61678 -13.19198 -13.11338 -12.92790 -12.82240 -12.75940 -12.67202 -12.58460 -12.35111 -12.25555 -12.08381 -11.73980 -11.53252 -11.39528 -11.14158 -11.11522 -10.93957 -10.83675 -10.57587 -10.30396 -9.96014 -8.96352 -7.90087 -5.15887 0.06075 0.62805 1.46129 1.49684 1.52018 1.88589 2.15904 2.31641 2.57320 2.78616 2.93570 3.10647 3.19869 3.43130 3.77562 3.80088 3.85032 3.89136 3.94009 4.00434 4.03703 4.07515 4.17561 4.26489 4.50927 4.56582 4.63205 4.64724 4.69580 4.79063 4.80552 4.84870 4.90771 4.92067 5.06081 5.08549 5.12183 5.13974 5.23456 5.30391 5.37150 5.50272 5.64265 6.31912 6.39988 6.55734 7.13079 7.19107 7.42438 8.09926 8.37941 9.31266 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.003792 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.718086 B = 7382.254105 C = 8519.300763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.053 4.053 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.292 1.292 7 C -0.214 4.214 8 H 0.064 0.936 9 N -0.711 5.711 10 C 0.188 3.812 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.590 3.410 14 O -0.575 6.575 15 C -0.274 4.274 16 C 0.028 3.972 17 O 0.098 5.902 18 N -0.374 5.374 19 C 0.089 3.911 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.157 4.157 23 C -0.143 4.143 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.075 3.925 27 C -0.150 4.150 28 H 0.248 0.752 29 H 0.379 0.621 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.408 0.592 33 H 0.264 0.736 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.036 0.964 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -11.714 7.568 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.247 4.247 3 Si 0.775 3.225 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.220 1.220 7 C -0.346 4.346 8 H 0.082 0.918 9 N -0.353 5.353 10 C 0.097 3.903 11 C 0.001 3.999 12 N -0.336 5.336 13 C 0.377 3.623 14 O -0.456 6.456 15 C -0.281 4.281 16 C -0.054 4.054 17 O 0.040 5.960 18 N -0.082 5.082 19 C -0.073 4.073 20 C -0.127 4.127 21 C -0.183 4.183 22 C -0.195 4.195 23 C -0.181 4.181 24 C -0.013 4.013 25 O -0.318 6.318 26 C -0.001 4.001 27 C -0.190 4.190 28 H 0.057 0.943 29 H 0.214 0.786 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.245 0.755 33 H 0.280 0.720 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.129 0.871 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.331 -11.893 8.691 14.913 hybrid contribution 0.088 1.894 -0.803 2.060 sum 2.418 -9.998 7.888 12.963 Atomic orbital electron populations 1.69711 1.05654 1.25521 1.59587 1.25094 0.95893 0.99369 1.04311 0.85693 0.77517 0.81823 0.77501 1.21108 1.22644 1.21961 1.19127 0.90786 0.84722 1.40006 0.91791 1.42486 1.05924 0.99868 1.86977 1.20004 0.91790 0.86814 0.91666 1.21729 0.94624 1.00111 0.83479 1.45492 1.14013 1.69476 1.04579 1.17010 0.85926 0.76758 0.82567 1.90720 1.16237 1.50994 1.87691 1.22266 0.95402 1.15984 0.94492 1.27093 0.96929 0.94462 0.86961 1.84548 1.30117 1.64814 1.16527 1.73573 0.94519 1.19829 1.20261 1.24106 0.96029 0.99056 0.88140 1.20383 0.89356 1.07148 0.95824 1.23117 1.03778 0.99228 0.92198 1.23093 1.01400 0.93678 1.01288 1.22322 0.98448 0.97940 0.99397 1.22597 0.92581 1.01912 0.84224 1.87803 1.52969 1.49059 1.41945 1.22357 0.90658 0.88910 0.98200 1.22419 0.98697 1.01994 0.95913 0.94310 0.78649 0.94238 0.91145 0.75488 0.72032 0.85573 0.88469 0.85649 0.86282 0.89414 0.89402 0.89631 0.94306 0.87097 0.94595 0.88551 0.92091 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.31 13.07 21.65 0.28 -51.03 16 2 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16 3 Si 0.94 43.59 29.55 68.60 2.03 45.61 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.21 -10.08 8.67 84.03 0.73 -9.35 16 8 H 0.06 3.08 6.78 -2.91 -0.02 3.06 16 9 N -0.71 -27.92 3.60 -302.82 -1.09 -29.01 16 10 C 0.19 5.88 0.41 3.72 0.00 5.88 16 11 C 0.13 4.06 4.36 86.38 0.38 4.44 16 12 N -0.69 -20.68 5.13 -466.40 -2.39 -23.07 16 13 C 0.59 19.45 7.81 86.66 0.68 20.13 16 14 O -0.57 -22.40 15.80 -4.05 -0.06 -22.47 16 15 C -0.27 -7.84 6.47 -18.74 -0.12 -7.96 16 16 C 0.03 0.60 11.85 67.61 0.80 1.40 16 17 O 0.10 2.38 11.06 76.97 0.85 3.23 16 18 N -0.37 -10.41 11.71 -44.77 -0.52 -10.93 16 19 C 0.09 2.57 7.07 45.15 0.32 2.89 16 20 C -0.11 -2.82 5.90 -11.54 -0.07 -2.89 16 21 C -0.15 -2.89 10.17 30.62 0.31 -2.58 16 22 C -0.16 -3.43 10.24 30.62 0.31 -3.12 16 23 C -0.14 -3.60 4.80 30.69 0.15 -3.45 16 24 C 0.06 1.72 6.67 72.02 0.48 2.20 16 25 O -0.40 -12.43 10.77 -148.98 -1.60 -14.03 16 26 C 0.08 2.43 6.68 72.02 0.48 2.91 16 27 C -0.15 -4.69 4.79 30.69 0.15 -4.54 16 28 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.38 15.92 6.82 -92.71 -0.63 15.29 16 30 H 0.04 1.50 7.47 -2.39 -0.02 1.48 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.41 11.07 6.61 -92.70 -0.61 10.45 16 33 H 0.26 3.50 7.68 -2.91 -0.02 3.48 16 34 H 0.13 3.57 7.29 -2.39 -0.02 3.55 16 35 H 0.10 2.00 7.97 -2.39 -0.02 1.98 16 36 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 1.88 7.40 -2.39 -0.02 1.87 16 41 H 0.04 1.23 7.15 -2.39 -0.02 1.21 16 42 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 44 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.06 2.11 7.20 -2.39 -0.02 2.09 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -63.25 376.97 2.33 -60.91 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.22 Total: 37.07 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.06 Total: 3.70 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.72 Total: -114.04 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.82 Total: -33.26 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.25 2.33 -60.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699884668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.649 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds